MD15G1126800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
9210618 .. 9212546
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1126800.v1.1.491

Sequence Viewer

Length: 1464 bp
ATGTGCAAACCCTTTTTCTACTTGTTACCCAAAAGCCCATGTGGCATCAAATCAGAAAGAAAGGAAAAAGCCCTTCTCTTACGTCTTCCTCATCGCTCTCTCTCTCTCTCTCTCTGCGAAAGCTCTCTGTGGGTAGAACCTACCAACGATCTCGCGGTTCTCCGCCTTGACCTTCTCACTTTAGGCTCCCCCTCCGTGTCAGTACAACCTCTTCCGGCGGCCCAAAACCTACAAACCGCTCCTTTACGTGCTCTGTCGACTGCGGCTCTTCTACTCTCCAGTTATCTGGCAATGGACGCCAAGGCTTTAGCAAAATCAAAGAGGGCACACTCCGAGCACCATAGTAAAAAGTATCATCCAAATCCGAAAGCAAAATCCGCAGCCGTTGGGGGCGGCAAGGGAAATGAGGCTGGAACCGCCAAGAATCCGTTGGGAAAGCAAGTTCAAGAGAAAACTCACCCTACTAAGGGTGCGTCTGCCCTCCCATCAAATTGGGATCGTTACGAGGAAGAGTTAGATTTAGGTTCAGAAGATCCAGTTCCAGCAGCTGATGGTTCGAATCGAGCCCCTGATGTAGTTATTCCGAAGAGTAAGGGTGCAGACTTTTGTCATCTGATAGATGAGGCGCGGTCTCAGTCTCAGTCATTCGCGTATTCAGATACATTTCCTGGTTTGGAGAATGATCTGCTCGGGGAATGGAATAAGGGGATAGAAACTATGCTTTCGGTCAGGGGGGAGAGCGTTCTATCACGGATTGGAGATGATAATTTTGTTGTGGAGGATAAGAATACTGCTGCACCTCATGAGGTGTCATTTCTCTCCTTGAATTTGCATTCTCTTGCAGAACAATTGGAAAAGATAGACTTACCGCAGAGGCTTTTCATTGAAGCGGATCTATTGCCACCGGAGCTGTATGCGGAGCAAGCAACATGTGGTGAGGAAGCAGCCCGAAGATTGCCTGAAGAATCACCCTGCAGTGATTTTTCGGAGGAGGTCCAGGTTCCTGACCAGGATATTGAGATTAGGATATCTGATTCTCCTACTGATCCTATACTTGGCAAATCGGAGTATGAACACAAATTACCAGAGTCAGAAACACAAATCAGCGTAAAATCATTTGAGCCATCAACTGCAGAGGCGGAACTGGAACTGGATCTGCTTCTTGATTCATTTGGTGAGACCAAGATAAATGATTCAACTGCTTTCGAGTCTCGTACTACTTTTTCTGTACAAGTAGACGCTTCCCTGATGCCGATTCAACCTCGAAGAAAAGTCCCGGATTCATCTGCTACCATTGATGATGAGCTTGATGAGTTGATAAATGAAACATCGATACTGATTAACCAAGGCGGTCTGTCTCAACCTCAAGAACAAAGGGCTGTCCATGATTTTCAATCATCGTCTATTTCCGGAACAAAGTCTAAAGAAGTGGATGATTTTGATTCTTGGTTGGATACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

488

Amino Acids

53.33

Weight (kDa)

4.73

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011113)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 239
AccI GTMKAC 2 cut(s) 257, 1236
AccII CGCG 3 cut(s) 155, 628, 650
AccIII TCCGGA 1 cut(s) 1409
AclWI GGATC 5 cut(s) 504, 527, 900, 1040, 1161
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 981
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 3 cut(s) 204, 1216, 1230
AfiI CCNNNNNNNGG 3 cut(s) 466, 467, 1055
AflIII ACRYGT 1 cut(s) 929
AgsI TTSAA 6 cut(s) 446, 826, 887, 1197, 1259, 1394
AjnI CCWGG 3 cut(s) 667, 996, 1008
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 4 cut(s) 123, 548, 910, 1306
AluI AGCT 4 cut(s) 123, 548, 910, 1306
Alw21I GWGCWC 2 cut(s) 253, 339
Alw26I GTCTC 5 cut(s) 636, 642, 1172, 1215, 1362
AlwI GGATC 5 cut(s) 504, 527, 900, 1040, 1161
AlwNI CAGNNNCTG 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 689
Aor13HI TCCGGA 1 cut(s) 1409
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 4 cut(s) 380, 545, 794, 944
ApoI RAATTY 1 cut(s) 826
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 2 cut(s) 220, 994
AsuC2I CCSGG 1 cut(s) 1277
AsuHPI GGTGA 4 cut(s) 449, 947, 960, 1187
AsuII TTCGAA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 994
BaeGI GKGCMC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 568
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 253, 339
BbvI GCAGC 4 cut(s) 392, 557, 781, 956
BccI CCATC 3 cut(s) 493, 545, 1132
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 3 cut(s) 669, 998, 1010
BciVI GTATCC 1 cut(s) 1447
BcnI CCSGG 1 cut(s) 1277
BcoDI GTCTC 5 cut(s) 636, 642, 1172, 1215, 1362
BfmI CTRYAG 2 cut(s) 973, 1131
BfuI GTATCC 1 cut(s) 1447
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 7 cut(s) 219, 264, 381, 394, 546, 795, 945
BlsI GCNGC 7 cut(s) 220, 265, 382, 395, 547, 796, 946
Bme1390I CCNGG 4 cut(s) 669, 998, 1010, 1277
Bme18I GGWCC 1 cut(s) 994
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 220, 994
BmiI GGNNCC 3 cut(s) 187, 415, 1002
BmrFI CCNGG 4 cut(s) 669, 998, 1010, 1277
BmsI GCATC 2 cut(s) 54, 1239
BoxI GACNNNNGTC 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 1350
BpuMI CCSGG 1 cut(s) 1277
Bsa29I ATCGAT 1 cut(s) 1331
BsaAI YACGTR 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 636, 1172
BsaJI CCNNGG 2 cut(s) 300, 1345
BsaWI WCCGGW 2 cut(s) 904, 1409
Bsc4I CCNNNNNNNGG 3 cut(s) 466, 467, 1055
Bse1I ACTGG 4 cut(s) 279, 536, 1149, 1155
Bse3DI GCAATG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 1409
BseBI CCWGG 3 cut(s) 669, 998, 1010
BseCI ATCGAT 1 cut(s) 1331
BseDI CCNNGG 2 cut(s) 300, 1345
BseGI GGATG 2 cut(s) 355, 1438
BseLI CCNNNNNNNGG 3 cut(s) 466, 467, 1055
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 647, 653
BseNI ACTGG 4 cut(s) 279, 536, 1149, 1155
BseRI GAGGAG 1 cut(s) 1004
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 4 cut(s) 392, 557, 781, 956
BsgI GTGCAG 2 cut(s) 618, 780
Bsh1236I CGCG 3 cut(s) 155, 628, 650
BshFI GGCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 1331
BsiHKAI GWGCWC 2 cut(s) 253, 339
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 4 cut(s) 215, 905, 1277, 1410
BslFI GGGAC 1 cut(s) 1259
BslI CCNNNNNNNGG 3 cut(s) 466, 467, 1055
BsmAI GTCTC 5 cut(s) 636, 642, 1172, 1215, 1362
BsmFI GGGAC 1 cut(s) 1259
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 1 cut(s) 221
Bso31I GGTCTC 2 cut(s) 636, 1172
BsoBI CYCGRG 1 cut(s) 689
Bsp119I TTCGAA 1 cut(s) 557
Bsp1286I GDGCHC 4 cut(s) 253, 328, 339, 568
Bsp13I TCCGGA 1 cut(s) 1409
Bsp1407I TGTACA 1 cut(s) 1228
Bsp143I GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 646, 652
BspDI ATCGAT 1 cut(s) 1331
BspEI TCCGGA 1 cut(s) 1409
BspFNI CGCG 3 cut(s) 155, 628, 650
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 3 cut(s) 187, 415, 1002
BspMAI CTGCAG 2 cut(s) 977, 1135
BspPI GGATC 5 cut(s) 504, 527, 900, 1040, 1161
BspQI GCTCTTC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 557
BspTNI GGTCTC 2 cut(s) 636, 1172
BsrBI CCGCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 297
BsrGI TGTACA 1 cut(s) 1228
BsrI ACTGG 4 cut(s) 279, 536, 1149, 1155
BssECI CCNNGG 2 cut(s) 300, 1345
BssMI GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 300, 1345
Bst2UI CCWGG 3 cut(s) 669, 998, 1010
Bst6I CTCTTC 4 cut(s) 216, 273, 504, 581
BstACI GRCGYC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 1228
BstBAI YACGTR 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 924
BstDEI CTNAG 3 cut(s) 465, 633, 639
BstF5I GGATG 2 cut(s) 355, 1438
BstFNI CGCG 3 cut(s) 155, 628, 650
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 7 cut(s) 151, 499, 535, 685, 895, 1048, 1156
BstMAI GTCTC 5 cut(s) 636, 642, 1172, 1215, 1362
BstMBI GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
BstMWI GCNNNNNNNGC 6 cut(s) 42, 296, 377, 416, 907, 923
BstNI CCWGG 3 cut(s) 669, 998, 1010
BstNSI RCATGY 1 cut(s) 933
BstPAI GACNNNNGTC 1 cut(s) 606
BstSCI CCNGG 4 cut(s) 667, 996, 1008, 1275
BstSFI CTRYAG 2 cut(s) 973, 1131
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 3 cut(s) 155, 628, 650
BstV1I GCAGC 4 cut(s) 392, 557, 781, 956
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 3 cut(s) 532, 892, 1153
BstXI CCANNNNNNTGG 2 cut(s) 286, 492
BstYI RGATCY 3 cut(s) 532, 892, 1153
Bsu15I ATCGAT 1 cut(s) 1331
BsuI GTATCC 1 cut(s) 1447
BsuRI GGCC 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 1331
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 355, 1438
BtsI GCAGTG 1 cut(s) 982
BtsIMutI CAGTG 1 cut(s) 982
Cac8I GCNNGC 1 cut(s) 924
CaiI CAGNNNCTG 1 cut(s) 548
CciI TCATGA 1 cut(s) 802
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 2 cut(s) 220, 994
ClaI ATCGAT 1 cut(s) 1331
CseI GACGC 3 cut(s) 305, 462, 1247
Csp6I GTAC 3 cut(s) 203, 1215, 1229
CviAII CATG 4 cut(s) 39, 803, 930, 1385
CviQI GTAC 3 cut(s) 203, 1215, 1229
DdeI CTNAG 3 cut(s) 465, 633, 639
DpnI GATC 7 cut(s) 150, 498, 534, 684, 894, 1047, 1155
DpnII GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
Eam1104I CTCTTC 4 cut(s) 216, 273, 504, 581
EarI CTCTTC 4 cut(s) 216, 273, 504, 581
EciI GGCGGA 2 cut(s) 152, 1154
Eco130I CCWWGG 2 cut(s) 300, 1345
Eco24I GRGCYC 1 cut(s) 568
Eco31I GGTCTC 2 cut(s) 636, 1172
Eco32I GATATC 1 cut(s) 1029
Eco47I GGWCC 1 cut(s) 994
Eco57I CTGAAG 1 cut(s) 981
Eco88I CYCGRG 1 cut(s) 689
EcoRII CCWGG 3 cut(s) 667, 996, 1008
EcoRV GATATC 1 cut(s) 1029
EcoT14I CCWWGG 2 cut(s) 300, 1345
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 300, 1345
FaeI CATG 4 cut(s) 42, 806, 933, 1388
FaiI YATR 9 cut(s) 40, 342, 719, 804, 915, 931, 1052, 1071, 1386
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FaqI GGGAC 1 cut(s) 1259
FatI CATG 4 cut(s) 38, 802, 929, 1384
FblI GTMKAC 2 cut(s) 257, 1236
Fnu4HI GCNGC 7 cut(s) 219, 264, 381, 394, 546, 795, 945
FokI GGATG 2 cut(s) 342, 1445
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 7 cut(s) 219, 264, 381, 394, 546, 795, 945
GlaI GCGC 1 cut(s) 627
GluI GCNGC 7 cut(s) 219, 264, 381, 394, 546, 795, 945
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 1 cut(s) 221
HapII CCGG 4 cut(s) 215, 905, 1277, 1410
HgaI GACGC 3 cut(s) 305, 462, 1247
HhaI GCGC 1 cut(s) 628
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 4 cut(s) 42, 806, 933, 1388
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HpaII CCGG 4 cut(s) 215, 905, 1277, 1410
HphI GGTGA 4 cut(s) 449, 947, 960, 1187
Hpy166II GTNNAC 2 cut(s) 258, 1237
Hpy188III TCNNGA 6 cut(s) 446, 803, 1004, 1163, 1367, 1410
Hpy8I GTNNAC 2 cut(s) 258, 1237
HpyAV CCTTC 2 cut(s) 83, 182
HpyCH4IV ACGT 2 cut(s) 82, 247
HpyCH4V TGCA 7 cut(s) 6, 599, 797, 832, 842, 975, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 296, 377, 416, 907, 923
HpyF3I CTNAG 3 cut(s) 465, 633, 639
HpySE526I ACGT 2 cut(s) 82, 247
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 4 cut(s) 42, 806, 933, 1388
HspAI GCGC 1 cut(s) 626
Kpn2I TCCGGA 1 cut(s) 1409
Kzo9I GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 4 cut(s) 191, 244, 907, 919
Lsp1109I GCAGC 4 cut(s) 392, 557, 781, 956
LweI GCATC 2 cut(s) 54, 1239
MaeII ACGT 2 cut(s) 82, 247
MaeIII GTNAC 2 cut(s) 24, 500
MalI GATC 7 cut(s) 150, 498, 534, 684, 894, 1047, 1155
MbiI CCGCTC 1 cut(s) 239
MboI GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
MboII GAAGA 9 cut(s) 77, 203, 260, 521, 542, 598, 963, 974, 1278
MfeI CAATTG 1 cut(s) 848
MflI RGATCY 3 cut(s) 532, 892, 1153
MhlI GDGCHC 4 cut(s) 253, 328, 339, 568
MluCI AATT 6 cut(s) 490, 766, 826, 848, 1079, 1458
MlyI GAGTC 2 cut(s) 1097, 1217
MmeI TCCRAC 1 cut(s) 1431
MroI TCCGGA 1 cut(s) 1409
MseI TTAA 1 cut(s) 1341
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 4 cut(s) 215, 905, 1277, 1410
MspR9I CCNGG 4 cut(s) 669, 998, 1010, 1277
MunI CAATTG 1 cut(s) 848
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 3 cut(s) 669, 998, 1010
MvnI CGCG 3 cut(s) 155, 628, 650
MwoI GCNNNNNNNGC 6 cut(s) 42, 296, 377, 416, 907, 923
NciI CCSGG 1 cut(s) 1277
NdeII GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
NlaIII CATG 4 cut(s) 42, 806, 933, 1388
NlaIV GGNNCC 3 cut(s) 187, 415, 1002
NspI RCATGY 1 cut(s) 933
NspV TTCGAA 1 cut(s) 557
PagI TCATGA 1 cut(s) 802
PciI ACATGT 1 cut(s) 929
PciSI GCTCTTC 1 cut(s) 273
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 9 cut(s) 424, 559, 965, 1034, 1166, 1193, 1255, 1280, 1442
PfoI TCCNGGA 1 cut(s) 1275
PkrI GCNGC 7 cut(s) 220, 265, 382, 395, 547, 796, 946
PleI GAGTC 2 cut(s) 1096, 1216
PpsI GAGTC 2 cut(s) 1096, 1216
Ppu21I YACGTR 1 cut(s) 248
PscI ACATGT 1 cut(s) 929
PshAI GACNNNNGTC 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 667, 996, 1008
PspGI CCWGG 3 cut(s) 667, 996, 1008
PspN4I GGNNCC 3 cut(s) 187, 415, 1002
PspPI GGNCC 2 cut(s) 220, 994
PsrI GAACNNNNNNTAC 2 cut(s) 1065, 1097
PstI CTGCAG 2 cut(s) 977, 1135
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 3 cut(s) 532, 892, 1153
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 3 cut(s) 204, 1216, 1230
RsaNI GTAC 3 cut(s) 203, 1215, 1229
SalI GTCGAC 1 cut(s) 256
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 1341
SatI GCNGC 7 cut(s) 219, 264, 381, 394, 546, 795, 945
Sau3AI GATC 7 cut(s) 148, 496, 532, 682, 892, 1045, 1153
Sau96I GGNCC 2 cut(s) 220, 994
SchI GAGTC 2 cut(s) 1097, 1217
ScrFI CCNGG 4 cut(s) 669, 998, 1010, 1277
SduI GDGCHC 4 cut(s) 253, 328, 339, 568
SfaNI GCATC 2 cut(s) 54, 1239
SfcI CTRYAG 2 cut(s) 973, 1131
SfuI TTCGAA 1 cut(s) 557
SinI GGWCC 1 cut(s) 994
SmlI CTYRAG 1 cut(s) 1365
SmoI CTYRAG 1 cut(s) 1365
Sse9I AATT 6 cut(s) 490, 766, 826, 848, 1079, 1458
StyD4I CCNGG 4 cut(s) 667, 996, 1008, 1275
StyI CCWWGG 2 cut(s) 300, 1345
TaiI ACGT 2 cut(s) 85, 250
TaqI TCGA 6 cut(s) 257, 557, 562, 1206, 1264, 1331
TaqII GACCGA 1 cut(s) 715
TasI AATT 6 cut(s) 490, 766, 826, 848, 1079, 1458
TatI WGTACW 2 cut(s) 202, 1228
TauI GCSGC 3 cut(s) 221, 266, 396
TfiI GAWTC 9 cut(s) 424, 559, 965, 1034, 1166, 1193, 1255, 1280, 1442
Tru1I TTAA 1 cut(s) 1341
Tru9I TTAA 1 cut(s) 1341
TscAI CASTG 1 cut(s) 982
TseI GCWGC 4 cut(s) 380, 545, 794, 944
TspDTI ATGAA 5 cut(s) 871, 1086, 1158, 1272, 1338
TspGWI ACGGA 3 cut(s) 184, 417, 766
TspRI CASTG 1 cut(s) 982
VpaK11BI GGWCC 1 cut(s) 994
XapI RAATTY 1 cut(s) 826
XceI RCATGY 1 cut(s) 933
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmiI GTMKAC 2 cut(s) 257, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.