Rroxscaffold_3G00233960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011113
Physical Location & Seq
Reverse (-)
20276564 .. 20280382
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233960.1

Sequence Viewer

Length: 1167 bp
ATGGATTCCAAGGCTTTAGCAAAATCCAAGAGGACACACTCTCAACACCACACTAAAAAGTACCACTCGAATCAGAAAGCAAAGCCCCAAGCAGGTGGAGCCAAGGGGAAGCAAATCCCAACAAACTGGGATCGTTACGAGGAAGAATTCGATTTGGGTTCTGAAGGTAGTGCCTCCGACATTGTTTTGCCCAAGAGTAAAGGTGCTGATTATAGTCATCTCATTGCTGAGGCACAGTCTCAGTCTCAGTCTCAGTCTCAATTTGACGATGTTCTGTCTGGGGAGTGGAATAAGGGGATTGGGTCTATGCTTTCGGCCAGGGGAGACAGCATTCTATCATGGATTGGAGATGATAATTTTGTTGTGGATGATAAGACAGCTCCAAATCACGAGGTATCGTTTCTTTCCTTGAATTTGCATTCCCTTGCAGAACAACTGGAGAAAGTAGACATATCACAGAGGCTTTACATTGAGGCAGACCTATTGCCTCCAGAACTGAATGCGGAAGGTTTAGAGTCAACTAGCAGTCAGTCTGCTGATCAGGTGGAAGCAACATTAGTTAACAAAGGAGCCAGAGTAATATCCGAAGAATCAACCTGTGGTGAGTTTCCCGACAAGAGCGAAGTGGCAGATCAAGATATTGAGATTATGATATCGAATTCTCCTGACAGTGATTGTCTAGACCCAAATTTGTCTAACATGGGATCAATTTCACTCAACCAAGTTGATGTTGATCTGAGTAAACTTGAAAAATCCACCAATCAAAGGAAACCACCAGAGTCGAGTGTGAAACCTTTGGCAGGCGTTCCAAACAAGAATGTTGCCACATTTAAGGCAGCAACTGCAGAGGAAGAACTGGATATGCTTCTTGACTCATTTAGTGAGACCAAGATAAATGATTCATCTGGTTTCAGGTTTGTACAGGAAGAAGCTTCTGTGCCTCCACTTCAACTTCCTAGAAAAGGTACAGATTCATCAAAGCTGATGGCTGCCAACCTTGATGATGCGCTTGATGACTTGATAAATGAAATATCCATTCCAATCAACCAAAGTAGCCCGTCTCACCCCCAAGAAAAAATGGCCGTGCATGATTTTGAATCTTCCTCTCGTACTATATCAAAGTCCAAAGAACTGGATGATTTTGATTCATGGTTGGATACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

42.41

Weight (kDa)

4.58

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 447
AciI CCGC 1 cut(s) 503
AclWI GGATC 2 cut(s) 138, 712
AcoI YGGCCR 2 cut(s) 315, 1080
AcsI RAATTY 4 cut(s) 146, 412, 658, 688
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 4 cut(s) 62, 921, 967, 1111
AfiI CCNNNNNNNGG 4 cut(s) 92, 765, 800, 962
AgsI TTSAA 4 cut(s) 412, 749, 950, 1097
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 3 cut(s) 380, 932, 982
AluI AGCT 3 cut(s) 380, 932, 982
Alw26I GTCTC 7 cut(s) 243, 249, 255, 261, 318, 878, 1065
AlwI GGATC 2 cut(s) 138, 712
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 2 cut(s) 315, 1080
ApeKI GCWGC 2 cut(s) 836, 989
ApoI RAATTY 4 cut(s) 146, 412, 658, 688
AspLEI GCGC 1 cut(s) 1009
AsuHPI GGTGA 2 cut(s) 614, 1055
BauI CACGAG 1 cut(s) 389
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 848, 976
BccI CCATC 1 cut(s) 979
BceAI ACGGC 1 cut(s) 1067
BciT130I CCWGG 1 cut(s) 319
BciVI GTATCC 1 cut(s) 1150
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 7 cut(s) 243, 249, 255, 261, 318, 878, 1065
BfaI CTAG 3 cut(s) 522, 680, 957
BfmI CTRYAG 1 cut(s) 843
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 1150
BisI GCNGC 2 cut(s) 837, 990
BlsI GCNGC 2 cut(s) 838, 991
Bme1390I CCNGG 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 100, 571
BmrFI CCNGG 1 cut(s) 319
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 994
BmuI ACTGGG 1 cut(s) 136
BpmI CTGGAG 2 cut(s) 458, 474
Bpu10I CCTNAGC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 3 cut(s) 9, 102, 318
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 765, 800, 962
Bse1I ACTGG 4 cut(s) 131, 441, 861, 1137
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 3 cut(s) 9, 102, 318
BseGI GGATG 2 cut(s) 373, 1141
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 4 cut(s) 92, 765, 800, 962
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 5 cut(s) 219, 254, 260, 266, 728
BseNI ACTGG 4 cut(s) 131, 441, 861, 1137
BseXI GCAGC 2 cut(s) 848, 976
BshFI GGCC 2 cut(s) 317, 1082
BslI CCNNNNNNNGG 4 cut(s) 92, 765, 800, 962
BsmAI GTCTC 7 cut(s) 243, 249, 255, 261, 318, 878, 1065
BsmBI CGTCTC 1 cut(s) 1065
BsmI GAATGC 3 cut(s) 330, 418, 505
BsnI GGCC 2 cut(s) 317, 1082
Bso31I GGTCTC 1 cut(s) 878
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 5 cut(s) 130, 538, 631, 704, 733
BspACI CCGC 1 cut(s) 503
BspANI GGCC 2 cut(s) 317, 1082
BspCNI CTCAG 5 cut(s) 220, 253, 259, 265, 729
BspLI GGNNCC 2 cut(s) 100, 571
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 138, 712
BspTNI GGTCTC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 4 cut(s) 131, 441, 861, 1137
BssECI CCNNGG 3 cut(s) 9, 102, 318
BssMI GATC 5 cut(s) 130, 538, 631, 704, 733
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 9, 102
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 237, 671, 1162
BstAPI GCANNNNNTGC 1 cut(s) 842
BstAUI TGTACA 1 cut(s) 919
BstC8I GCNNGC 1 cut(s) 802
BstDEI CTNAG 5 cut(s) 228, 240, 246, 252, 737
BstENI CCTNNNNNAGG 2 cut(s) 798, 960
BstF5I GGATG 2 cut(s) 373, 1141
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 5 cut(s) 133, 541, 634, 707, 736
BstMAI GTCTC 7 cut(s) 243, 249, 255, 261, 318, 878, 1065
BstMBI GATC 5 cut(s) 130, 538, 631, 704, 733
BstMWI GCNNNNNNNGC 2 cut(s) 98, 842
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 843
BstV1I GCAGC 2 cut(s) 848, 976
BstXI CCANNNNNNTGG 3 cut(s) 95, 126, 1132
BsuI GTATCC 1 cut(s) 1150
BsuRI GGCC 2 cut(s) 317, 1082
BtsCI GGATG 2 cut(s) 373, 1141
BtsIMutI CAGTG 1 cut(s) 676
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 802
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 1 cut(s) 1009
Csp6I GTAC 4 cut(s) 61, 920, 966, 1110
CviAII CATG 4 cut(s) 339, 700, 1088, 1149
CviQI GTAC 4 cut(s) 61, 920, 966, 1110
DdeI CTNAG 5 cut(s) 228, 240, 246, 252, 737
DpnI GATC 5 cut(s) 132, 540, 633, 706, 735
DpnII GATC 5 cut(s) 130, 538, 631, 704, 733
EaeI YGGCCR 2 cut(s) 315, 1080
Eco130I CCWWGG 2 cut(s) 9, 102
Eco31I GGTCTC 1 cut(s) 878
Eco32I GATATC 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 798, 960
EcoRI GAATTC 2 cut(s) 146, 658
EcoRII CCWGG 1 cut(s) 317
EcoRV GATATC 1 cut(s) 654
EcoT14I CCWWGG 2 cut(s) 9, 102
ErhI CCWWGG 2 cut(s) 9, 102
Esp3I CGTCTC 1 cut(s) 1065
FaeI CATG 4 cut(s) 342, 703, 1091, 1152
FatI CATG 4 cut(s) 338, 699, 1087, 1148
FbaI TGATCA 1 cut(s) 538
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 837, 990
FokI GGATG 2 cut(s) 380, 1148
Fsp4HI GCNGC 2 cut(s) 837, 990
FspBI CTAG 3 cut(s) 522, 680, 957
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 2 cut(s) 837, 990
GsuI CTGGAG 2 cut(s) 458, 474
HaeIII GGCC 2 cut(s) 317, 1082
HhaI GCGC 1 cut(s) 1009
Hin1II CATG 4 cut(s) 342, 703, 1091, 1152
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HincII GTYRAC 2 cut(s) 519, 562
HindII GTYRAC 2 cut(s) 519, 562
HindIII AAGCTT 1 cut(s) 930
HpaI GTTAAC 1 cut(s) 562
HphI GGTGA 2 cut(s) 614, 1055
Hpy166II GTNNAC 4 cut(s) 448, 519, 562, 743
Hpy188I TCNGA 5 cut(s) 75, 163, 178, 586, 738
Hpy188III TCNNGA 7 cut(s) 389, 491, 611, 635, 665, 680, 869
Hpy8I GTNNAC 4 cut(s) 448, 519, 562, 743
HpyAV CCTTC 2 cut(s) 158, 500
HpyCH4III ACNGT 3 cut(s) 237, 671, 1162
HpyCH4V TGCA 4 cut(s) 418, 428, 845, 1087
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 842
HpyF3I CTNAG 5 cut(s) 228, 240, 246, 252, 737
Hsp92II CATG 4 cut(s) 342, 703, 1091, 1152
HspAI GCGC 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 538
KspAI GTTAAC 1 cut(s) 562
Kzo9I GATC 5 cut(s) 130, 538, 631, 704, 733
LmnI GCTCC 3 cut(s) 98, 385, 569
Lsp1109I GCAGC 2 cut(s) 848, 976
LweI GCATC 1 cut(s) 994
MaeI CTAG 3 cut(s) 522, 680, 957
MaeIII GTNAC 1 cut(s) 134
MalI GATC 5 cut(s) 132, 540, 633, 706, 735
MboI GATC 5 cut(s) 130, 538, 631, 704, 733
MboII GAAGA 5 cut(s) 155, 599, 863, 938, 1092
MluCI AATT 7 cut(s) 146, 260, 355, 412, 658, 688, 708
MlyI GAGTC 3 cut(s) 524, 788, 866
MmeI TCCRAC 2 cut(s) 201, 1134
MseI TTAA 2 cut(s) 561, 831
MspR9I CCNGG 1 cut(s) 319
Mva1269I GAATGC 3 cut(s) 330, 418, 505
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 2 cut(s) 98, 842
NdeII GATC 5 cut(s) 130, 538, 631, 704, 733
NlaIII CATG 4 cut(s) 342, 703, 1091, 1152
NlaIV GGNNCC 2 cut(s) 100, 571
PaqCI CACCTGC 1 cut(s) 83
PctI GAATGC 3 cut(s) 330, 418, 505
PfeI GAWTC 7 cut(s) 5, 70, 590, 899, 971, 1097, 1145
PkrI GCNGC 2 cut(s) 838, 991
PleI GAGTC 3 cut(s) 523, 787, 866
PpsI GAGTC 3 cut(s) 523, 787, 866
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 100, 571
PstI CTGCAG 1 cut(s) 847
PstNI CAGNNNCTG 1 cut(s) 842
RsaI GTAC 4 cut(s) 62, 921, 967, 1111
RsaNI GTAC 4 cut(s) 61, 920, 966, 1110
SaqAI TTAA 2 cut(s) 561, 831
SatI GCNGC 2 cut(s) 837, 990
Sau3AI GATC 5 cut(s) 130, 538, 631, 704, 733
SchI GAGTC 3 cut(s) 524, 788, 866
ScrFI CCNGG 1 cut(s) 319
SfaNI GCATC 1 cut(s) 994
SfcI CTRYAG 1 cut(s) 843
Sse9I AATT 7 cut(s) 146, 260, 355, 412, 658, 688, 708
SsiI CCGC 1 cut(s) 503
SspMI CTAG 3 cut(s) 522, 680, 957
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 2 cut(s) 9, 102
TaaI ACNGT 3 cut(s) 237, 671, 1162
TaqI TCGA 4 cut(s) 68, 150, 656, 782
TasI AATT 7 cut(s) 146, 260, 355, 412, 658, 688, 708
TatI WGTACW 1 cut(s) 919
TfiI GAWTC 7 cut(s) 5, 70, 590, 899, 971, 1097, 1145
Tru1I TTAA 2 cut(s) 561, 831
Tru9I TTAA 2 cut(s) 561, 831
TscAI CASTG 1 cut(s) 676
TseI GCWGC 2 cut(s) 836, 989
TspDTI ATGAA 4 cut(s) 891, 963, 1041, 1137
TspRI CASTG 1 cut(s) 676
XagI CCTNNNNNAGG 2 cut(s) 798, 960
XapI RAATTY 4 cut(s) 146, 412, 658, 688
XbaI TCTAGA 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 3 cut(s) 522, 680, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.