Rh7AG374700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011113
Physical Location & Seq
Reverse (-)
48474012 .. 48474701
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG374700.1

Sequence Viewer

Length: 690 bp
ATGACCTTGTTTATGCAACAGAATGCAGAAGGTTTAGAGTCAACTAGTAGTCAGTCTGCTGATCAGGAGGAAGCAACATTAGCTAACAAAGGAGCCAGAGTAATATCTGAAGAATCAACCTGTGGTGAGTTTCCCGACAAGAGCGACGTAGCAGATCATGATATTGAGATTATGATATCGAATTCTCCTGACAGTGATTGTCTAGACCTAAATTTGTCTAACATGGGATCAATTTCACTCAACCAAGTTGATGTTGATCTGAGTAAACTTGAAAAATCCACCAATCAAAGGAAACCACCAGAGTCGAGTGCGAAACCTTTGGCAGGCGTTCCAAACAAGAATGTTGCCACATTTAAGGCAGCAACTGCAGACGAAGAACTGGATATGCTTCTTGACTCATTTAGTGAGACCAAGATAAATGATTCATCTGGTTTCAGGTTTGTACAGGAAGAAGCTTCTGTGCCTCCACTTCAACTTCCTAGAAAAGGTACATATTCATCAAAGCTGATGGCTGCCAACCTTGATGATGCGCTTGATGACTTGATAAATGAAATATCCATTCCAATCAACCAAAGTGGTCCGTCTCACCCCCAAGAAAAAATGGCCGTGCATGATTTTGAATCTTCCTCTCGTACTATATCAAAGTCCAAAGAACTGGATGATTTTGATTCATGGTTGGATACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.95

Weight (kDa)

4.28

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 2 cut(s) 181, 211
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 3 cut(s) 444, 490, 634
AfiI CCNNNNNNNGG 3 cut(s) 288, 323, 485
AgsI TTSAA 3 cut(s) 272, 473, 620
AhlI ACTAGT 1 cut(s) 44
AluBI AGCT 3 cut(s) 83, 455, 505
AluI AGCT 3 cut(s) 83, 455, 505
Alw26I GTCTC 2 cut(s) 401, 588
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 2 cut(s) 359, 512
ApoI RAATTY 2 cut(s) 181, 211
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 2 cut(s) 137, 578
AvaII GGWCC 1 cut(s) 578
BbvI GCAGC 2 cut(s) 371, 499
BccI CCATC 1 cut(s) 502
BceAI ACGGC 1 cut(s) 590
BciVI GTATCC 1 cut(s) 673
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 401, 588
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 3 cut(s) 45, 203, 480
BfmI CTRYAG 1 cut(s) 366
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 2 cut(s) 360, 513
BlsI GCNGC 2 cut(s) 361, 514
Bme18I GGWCC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 94
BmsI GCATC 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 323, 485
Bse1I ACTGG 2 cut(s) 384, 660
Bse8I GATNNNNATC 1 cut(s) 255
BseGI GGATG 1 cut(s) 664
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 3 cut(s) 288, 323, 485
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 384, 660
BseXI GCAGC 2 cut(s) 371, 499
BshFI GGCC 1 cut(s) 605
BslI CCNNNNNNNGG 3 cut(s) 288, 323, 485
BsmAI GTCTC 2 cut(s) 401, 588
BsmBI CGTCTC 1 cut(s) 588
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 1 cut(s) 605
Bso31I GGTCTC 1 cut(s) 401
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 4 cut(s) 61, 154, 227, 256
BspANI GGCC 1 cut(s) 605
BspCNI CTCAG 1 cut(s) 252
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 2 cut(s) 384, 660
BssMI GATC 4 cut(s) 61, 154, 227, 256
Bst4CI ACNGT 2 cut(s) 194, 685
BstAPI GCANNNNNTGC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 260
BstENI CCTNNNNNAGG 2 cut(s) 321, 483
BstF5I GGATG 1 cut(s) 664
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 4 cut(s) 64, 157, 230, 259
BstMAI GTCTC 2 cut(s) 401, 588
BstMBI GATC 4 cut(s) 61, 154, 227, 256
BstMWI GCNNNNNNNGC 2 cut(s) 80, 365
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 371, 499
BstXI CCANNNNNNTGG 1 cut(s) 655
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 1 cut(s) 605
BtsCI GGATG 1 cut(s) 664
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 325
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 3 cut(s) 443, 489, 633
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 4 cut(s) 158, 223, 611, 672
CviJI RGCY 6 cut(s) 83, 95, 455, 505, 512, 605
CviKI_1 RGCY 6 cut(s) 83, 95, 455, 505, 512, 605
CviQI GTAC 3 cut(s) 443, 489, 633
DdeI CTNAG 1 cut(s) 260
DpnI GATC 4 cut(s) 63, 156, 229, 258
DpnII GATC 4 cut(s) 61, 154, 227, 256
EaeI YGGCCR 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 401
Eco32I GATATC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 129
EcoNI CCTNNNNNAGG 2 cut(s) 321, 483
EcoRI GAATTC 1 cut(s) 181
EcoRV GATATC 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 588
FaeI CATG 4 cut(s) 161, 226, 614, 675
FaiI YATR 9 cut(s) 14, 159, 173, 224, 386, 493, 612, 638, 673
FatI CATG 4 cut(s) 157, 222, 610, 671
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 360, 513
FokI GGATG 1 cut(s) 671
Fsp4HI GCNGC 2 cut(s) 360, 513
FspBI CTAG 3 cut(s) 45, 203, 480
GlaI GCGC 1 cut(s) 531
GluI GCNGC 2 cut(s) 360, 513
HaeIII GGCC 1 cut(s) 605
HhaI GCGC 1 cut(s) 532
Hin1II CATG 4 cut(s) 161, 226, 614, 675
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 7 cut(s) 38, 113, 302, 395, 422, 620, 668
HphI GGTGA 2 cut(s) 137, 578
Hpy166II GTNNAC 2 cut(s) 42, 266
Hpy188I TCNGA 2 cut(s) 109, 261
Hpy188III TCNNGA 6 cut(s) 65, 134, 158, 188, 203, 392
Hpy8I GTNNAC 2 cut(s) 42, 266
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 194, 685
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 16, 26, 368, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 365
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 4 cut(s) 161, 226, 614, 675
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 61, 154, 227, 256
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 2 cut(s) 371, 499
LweI GCATC 1 cut(s) 517
MaeI CTAG 3 cut(s) 45, 203, 480
MaeII ACGT 1 cut(s) 147
MalI GATC 4 cut(s) 63, 156, 229, 258
MboI GATC 4 cut(s) 61, 154, 227, 256
MboII GAAGA 4 cut(s) 122, 386, 461, 615
MluCI AATT 3 cut(s) 181, 211, 231
MlyI GAGTC 3 cut(s) 47, 311, 389
MmeI TCCRAC 1 cut(s) 657
MnlI CCTC 3 cut(s) 61, 474, 637
MseI TTAA 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 80, 365
NdeII GATC 4 cut(s) 61, 154, 227, 256
NlaIII CATG 4 cut(s) 161, 226, 614, 675
NlaIV GGNNCC 1 cut(s) 94
PagI TCATGA 1 cut(s) 157
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 4 cut(s) 113, 422, 620, 668
PkrI GCNGC 2 cut(s) 361, 514
PleI GAGTC 3 cut(s) 46, 310, 389
PpsI GAGTC 3 cut(s) 46, 310, 389
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 578
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 365
RsaI GTAC 3 cut(s) 444, 490, 634
RsaNI GTAC 3 cut(s) 443, 489, 633
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 2 cut(s) 360, 513
Sau3AI GATC 4 cut(s) 61, 154, 227, 256
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 3 cut(s) 47, 311, 389
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 578
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 3 cut(s) 181, 211, 231
SspMI CTAG 3 cut(s) 45, 203, 480
TaaI ACNGT 2 cut(s) 194, 685
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 179, 305
TasI AATT 3 cut(s) 181, 211, 231
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 4 cut(s) 113, 422, 620, 668
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 199
TseI GCWGC 2 cut(s) 359, 512
TspDTI ATGAA 4 cut(s) 414, 486, 564, 660
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 578
XagI CCTNNNNNAGG 2 cut(s) 321, 483
XapI RAATTY 2 cut(s) 181, 211
XbaI TCTAGA 1 cut(s) 202
XspI CTAG 3 cut(s) 45, 203, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.