Rorug07G0228300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011113
Physical Location & Seq
Forward (+)
20902014 .. 20903806
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0228300.1

Sequence Viewer

Length: 339 bp
ATGATCTCCTTCGACTCCAAGTCAGTCTCTCCGATGAGGCATGATGTGTCGTCATTGAGGCACCAAGATGAGATAGAAGCGACAGTAGTATCGTTGATGCATCGAGTTGCGGAATTAGCCGAGGAGCTAATGAATGTCAGAATGAAAGCCAATTTACACGTGATTGTGAAAATAGTACGTGCTGAAGAAATTGGTGGAGGATCTAATGGATGTCGGAGTGAAATGAAATTAAGAGGGGTGATGAAAATGTTGCTCGAGTTGGCTACTATTTGTTTGTCCCTTGCAGCCAAAATGGAGGAGATTGAGACTAAAGAAAGCAATGATAACGTTTACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

5.79

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 1 cut(s) 110
AclI AACGTT 1 cut(s) 327
AclWI GGATC 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 204
AcvI CACGTG 1 cut(s) 160
AfaI GTAC 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 157
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 31, 299
AlwI GGATC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BanI GGYRCC 1 cut(s) 60
BbrPI CACGTG 1 cut(s) 160
BbvI GCAGC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 31, 299
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmeRI GACNNNNNGTC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 62
BmsI GCATC 2 cut(s) 87, 109
BsaAI YACGTR 2 cut(s) 160, 179
BsaJI CCNNGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 215
BseMI GCAATG 1 cut(s) 325
BseRI GAGGAG 2 cut(s) 137, 311
BseXI GCAGC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 31, 299
BsmFI GGGAC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 254
Bsp143I GATC 2 cut(s) 3, 200
BspACI CCGC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 3, 200
Bst4CI ACNGT 1 cut(s) 85
BstBAI YACGTR 2 cut(s) 160, 179
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 2 cut(s) 6, 203
BstMAI GTCTC 2 cut(s) 31, 299
BstMBI GATC 2 cut(s) 3, 200
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtsCI GGATG 1 cut(s) 215
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 41
CviJI RGCY 5 cut(s) 119, 127, 149, 263, 287
CviKI_1 RGCY 5 cut(s) 119, 127, 149, 263, 287
CviQI GTAC 1 cut(s) 176
DpnI GATC 2 cut(s) 5, 202
DpnII GATC 2 cut(s) 3, 200
DriI GACNNNNNGTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 204
Eco72I CACGTG 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 102
FaeI CATG 1 cut(s) 44
FaiI YATR 3 cut(s) 42, 335, 337
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
Hin1II CATG 1 cut(s) 44
HinfI GANTC 1 cut(s) 14
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 33, 140, 216
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 3 cut(s) 159, 178, 327
HpyCH4V TGCA 2 cut(s) 100, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpySE526I ACGT 3 cut(s) 159, 178, 327
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 2 cut(s) 3, 200
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 87, 109
MaeII ACGT 3 cut(s) 159, 178, 327
MalI GATC 2 cut(s) 5, 202
MboI GATC 2 cut(s) 3, 200
MboII GAAGA 1 cut(s) 197
MflI RGATCY 1 cut(s) 200
MluCI AATT 4 cut(s) 113, 151, 189, 227
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 6 cut(s) 30, 51, 115, 191, 227, 289
Mph1103I ATGCAT 1 cut(s) 102
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 2 cut(s) 3, 200
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 62
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 254
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 2 cut(s) 160, 179
Psp1406I AACGTT 1 cut(s) 327
PspCI CACGTG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 62
PspXI VCTCGAGB 1 cut(s) 254
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 3, 200
SchI GAGTC 1 cut(s) 8
SetI ASST 4 cut(s) 129, 162, 181, 330
SfaNI GCATC 2 cut(s) 87, 109
Sfr274I CTCGAG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 4 cut(s) 113, 151, 189, 227
SsiI CCGC 1 cut(s) 110
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 3 cut(s) 162, 181, 330
TaqI TCGA 3 cut(s) 12, 103, 255
TasI AATT 4 cut(s) 113, 151, 189, 227
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 4 cut(s) 146, 158, 239, 257
XhoI CTCGAG 1 cut(s) 254
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.