pycom15g11440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011113
Physical Location & Seq
Forward (+)
7741872 .. 7743618
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11440.3

Sequence Viewer

Length: 1407 bp
ATGCGCAAACCCTTTTTCCACTTGAAAAAGCCCCTCTTGCGTCTTCCTCATCTCTCCCCCTCTCAGTGCGAAAGTAGAACCTACCAACGATCTCGCGGTCCTCCGCCTCGACCTTCTCACTTTAGGGGCTCCCCCTCCGTGTCCGTACAACCTATTCCGGCGGCTCAAAACCTACAAACCGCTCCTTTACTTGCTCTGTCGACTGCGGCTCTTCTACTCTCCAGTTATCTGGCAATGGACGCCAAGGCTTTAGCAAAATCGAAGAGGGCACACTCCGAGCACCATAGCAAGAAGTACCATCCAAAGCCGAAAGCAAAATCCTCAGCCGTCGGGGGCGGCAAGGGAAATGAGGCTGGAACCGCAAGGAATCCGCTGGGAAAGGAAGTTCAAGAGAAAACTCACCCTACTAAGGGTGCGTCTGCCCTCCCATCAAATTGGGATCGTTACGAGGAAGAGTTAGATTTAGGTTCAGAAGATCCAGTTCCAGCAGGTGATGGTTCGAATCGAGCCTCTGATGTAGTTGTTCCAAAGAGTAAGGGTGCAGACTTTTGTCATCTGATAGATGAGGCGCGGTCTCAGTCTCAGTCAATTGCGTATTCGGATACATTTCCTGGTTTGGAGAATGATCTGCTCGGGGAATGGAATAAGGGGATAGAAACTATGCTTTCGGTCAGGGGGGAGAGCGTTCTATCACGGATTGGAGATGATAATTTTGTTGTGGAGGATAAGAATGCTGCTGCACCTCATGAGGTGTCATTTCTCTCCTTGAATTTGCATTCTCTTGCAGAGCAATTGGAAAAGATTGACTTACCGCAGAGGCTTTTCATTGAAGCGGATCTATTGCCACCGGAGCTGTATGCGGAGCAAACAACATGTGATGAGGAAGCAGCCCGAAGATTGCCTGAAGAATCACCCCGCAGTGATTTTTCGGAGGAGGTTCAGGTTCCTGACCATGATATTGAGATTATGGTATCTGATTCTCCTACTGATCCTAAACTTGGCAAATCGGAGTATGAACACAAATTACCAGAGTCAGAAACACAAGTCAGCGTAAAATCATTTGAGCCATCAACTGCAGAGGCGGAACTGGAACTGGATCTGCTTCTTGATTCATTTGGTGAGACCAAGATAAATGATTCAACTGCTTTCAAGCCTCGTAATACTTTTTCTGTACAAGTAGATGCTTCCCTGATGCCGATTCAACCTCAAAGAAAAGTCCCGGATTCATCTGCTACCATTGATGATGAGCTTGATGAGTTGATAAATGAAACATCGATACTGATTAACCAAGGCGGTCTGTCTCAACCTCAAGAACAAAGGGCTGTCCATGATTTTCAATCATCGTCTATTTCCGGAACAAAGTCTAAAGAAGTGGATGATTTTGATTCTTGGTTGGATACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

51.43

Weight (kDa)

4.98

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 200
AccII CGCG 2 cut(s) 96, 571
AccIII TCCGGA 1 cut(s) 1352
AclWI GGATC 5 cut(s) 447, 470, 843, 983, 1104
AcsI RAATTY 1 cut(s) 769
AcuI CTGAAG 1 cut(s) 924
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 3 cut(s) 147, 296, 1173
AfiI CCNNNNNNNGG 3 cut(s) 409, 410, 998
AflIII ACRYGT 1 cut(s) 872
AgsI TTSAA 8 cut(s) 25, 389, 769, 830, 1140, 1150, 1202, 1337
AjnI CCWGG 1 cut(s) 610
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 2 cut(s) 853, 1249
AluI AGCT 2 cut(s) 853, 1249
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 4 cut(s) 579, 585, 1115, 1305
AlwI GGATC 5 cut(s) 447, 470, 843, 983, 1104
Ama87I CYCGRG 1 cut(s) 632
Aor13HI TCCGGA 1 cut(s) 1352
ApeKI GCWGC 3 cut(s) 734, 737, 887
ApoI RAATTY 1 cut(s) 769
AspLEI GCGC 2 cut(s) 6, 571
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 1220
AsuHPI GGTGA 4 cut(s) 392, 503, 903, 1130
AsuII TTCGAA 1 cut(s) 500
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 721, 724, 899
BccI CCATC 4 cut(s) 306, 436, 488, 1075
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 2 cut(s) 595, 1390
BcnI CCSGG 1 cut(s) 1220
BcoDI GTCTC 4 cut(s) 579, 585, 1115, 1305
BfmI CTRYAG 1 cut(s) 1074
BfuAI ACCTGC 1 cut(s) 479
BfuI GTATCC 2 cut(s) 595, 1390
BisI GCNGC 6 cut(s) 162, 207, 337, 735, 738, 888
BlsI GCNGC 6 cut(s) 163, 208, 338, 736, 739, 889
Bme1390I CCNGG 2 cut(s) 612, 1220
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 3 cut(s) 130, 358, 945
BmrFI CCNGG 2 cut(s) 612, 1220
BmsI GCATC 2 cut(s) 1171, 1182
BoxI GACNNNNGTC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 322
Bpu14I TTCGAA 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 1293
BpuMI CCSGG 1 cut(s) 1220
Bsa29I ATCGAT 1 cut(s) 1274
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 2 cut(s) 579, 1115
BsaJI CCNNGG 2 cut(s) 243, 1288
BsaWI WCCGGW 2 cut(s) 847, 1352
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 410, 998
Bse1I ACTGG 4 cut(s) 222, 479, 1092, 1098
Bse3DI GCAATG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 1352
BseBI CCWGG 1 cut(s) 612
BseCI ATCGAT 1 cut(s) 1274
BseDI CCNNGG 2 cut(s) 243, 1288
BseGI GGATG 2 cut(s) 298, 1381
BseLI CCNNNNNNNGG 3 cut(s) 409, 410, 998
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 4 cut(s) 77, 336, 590, 596
BseNI ACTGG 4 cut(s) 222, 479, 1092, 1098
BseRI GAGGAG 1 cut(s) 947
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 3 cut(s) 721, 724, 899
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 561, 723
Bsh1236I CGCG 2 cut(s) 96, 571
BshVI ATCGAT 1 cut(s) 1274
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 4 cut(s) 158, 848, 1220, 1353
BslFI GGGAC 1 cut(s) 1202
BslI CCNNNNNNNGG 3 cut(s) 409, 410, 998
BsmAI GTCTC 4 cut(s) 579, 585, 1115, 1305
BsmFI GGGAC 1 cut(s) 1202
BsmI GAATGC 2 cut(s) 736, 775
Bso31I GGTCTC 2 cut(s) 579, 1115
BsoBI CYCGRG 1 cut(s) 632
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 3 cut(s) 131, 271, 282
Bsp13I TCCGGA 1 cut(s) 1352
Bsp1407I TGTACA 1 cut(s) 1171
Bsp143I GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
BspCNI CTCAG 4 cut(s) 76, 335, 589, 595
BspDI ATCGAT 1 cut(s) 1274
BspEI TCCGGA 1 cut(s) 1352
BspFNI CGCG 2 cut(s) 96, 571
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 3 cut(s) 130, 358, 945
BspMAI CTGCAG 1 cut(s) 1078
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 5 cut(s) 447, 470, 843, 983, 1104
BspQI GCTCTTC 1 cut(s) 216
BspT104I TTCGAA 1 cut(s) 500
BspTNI GGTCTC 2 cut(s) 579, 1115
BsrBI CCGCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 1171
BsrI ACTGG 4 cut(s) 222, 479, 1092, 1098
BssECI CCNNGG 2 cut(s) 243, 1288
BssMI GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 243, 1288
Bst2UI CCWGG 1 cut(s) 612
Bst6I CTCTTC 3 cut(s) 216, 257, 447
BstACI GRCGYC 1 cut(s) 240
BstAUI TGTACA 1 cut(s) 1171
BstBI TTCGAA 1 cut(s) 500
BstDEI CTNAG 5 cut(s) 63, 322, 408, 576, 582
BstF5I GGATG 2 cut(s) 298, 1381
BstFNI CGCG 2 cut(s) 96, 571
BstHHI GCGC 2 cut(s) 6, 571
BstKTI GATC 7 cut(s) 92, 442, 478, 628, 838, 991, 1099
BstMAI GTCTC 4 cut(s) 579, 585, 1115, 1305
BstMBI GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 37, 239, 359, 850
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 1 cut(s) 876
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 2 cut(s) 610, 1218
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 2 cut(s) 96, 571
BstV1I GCAGC 3 cut(s) 721, 724, 899
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 3 cut(s) 475, 835, 1096
BstXI CCANNNNNNTGG 2 cut(s) 229, 435
BstYI RGATCY 3 cut(s) 475, 835, 1096
Bsu15I ATCGAT 1 cut(s) 1274
BsuI GTATCC 2 cut(s) 595, 1390
BsuTUI ATCGAT 1 cut(s) 1274
BtsCI GGATG 2 cut(s) 298, 1381
BtsI GCAGTG 1 cut(s) 925
BtsIMutI CAGTG 2 cut(s) 71, 925
BveI ACCTGC 1 cut(s) 479
CciI TCATGA 1 cut(s) 745
CfoI GCGC 2 cut(s) 6, 571
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 1274
CseI GACGC 3 cut(s) 29, 248, 405
Csp6I GTAC 3 cut(s) 146, 295, 1172
CviAII CATG 4 cut(s) 746, 873, 953, 1328
CviQI GTAC 3 cut(s) 146, 295, 1172
DdeI CTNAG 5 cut(s) 63, 322, 408, 576, 582
DpnI GATC 7 cut(s) 91, 441, 477, 627, 837, 990, 1098
DpnII GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
Eam1104I CTCTTC 3 cut(s) 216, 257, 447
EarI CTCTTC 3 cut(s) 216, 257, 447
EciI GGCGGA 2 cut(s) 93, 1097
Eco130I CCWWGG 2 cut(s) 243, 1288
Eco24I GRGCYC 1 cut(s) 131
Eco31I GGTCTC 2 cut(s) 579, 1115
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 243, 1288
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 2 cut(s) 243, 1288
FaeI CATG 4 cut(s) 749, 876, 956, 1331
FaiI YATR 9 cut(s) 285, 662, 747, 858, 874, 954, 968, 1014, 1329
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 791, 823
FaqI GGGAC 1 cut(s) 1202
FatI CATG 4 cut(s) 745, 872, 952, 1327
FauI CCCGC 1 cut(s) 923
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 6 cut(s) 162, 207, 337, 735, 738, 888
FokI GGATG 2 cut(s) 285, 1388
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 6 cut(s) 162, 207, 337, 735, 738, 888
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 570
GluI GCNGC 6 cut(s) 162, 207, 337, 735, 738, 888
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 205
HapII CCGG 4 cut(s) 158, 848, 1220, 1353
HgaI GACGC 3 cut(s) 29, 248, 405
HhaI GCGC 2 cut(s) 6, 571
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 4 cut(s) 749, 876, 956, 1331
Hin6I GCGC 2 cut(s) 4, 569
HinP1I GCGC 2 cut(s) 4, 569
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HpaII CCGG 4 cut(s) 158, 848, 1220, 1353
HphI GGTGA 4 cut(s) 392, 503, 903, 1130
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 9 cut(s) 277, 472, 514, 558, 601, 931, 976, 1009, 1036
Hpy188III TCNNGA 6 cut(s) 389, 746, 947, 1106, 1310, 1353
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 123
HpyCH4V TGCA 5 cut(s) 542, 740, 775, 785, 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 239, 359, 850
HpyF3I CTNAG 5 cut(s) 63, 322, 408, 576, 582
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 4 cut(s) 749, 876, 956, 1331
HspAI GCGC 2 cut(s) 4, 569
Kpn2I TCCGGA 1 cut(s) 1352
Kzo9I GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 4 cut(s) 134, 187, 850, 862
Lsp1109I GCAGC 3 cut(s) 721, 724, 899
LweI GCATC 2 cut(s) 1171, 1182
MaeIII GTNAC 1 cut(s) 443
MalI GATC 7 cut(s) 91, 441, 477, 627, 837, 990, 1098
MbiI CCGCTC 1 cut(s) 182
MboI GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
MboII GAAGA 7 cut(s) 35, 203, 274, 464, 485, 906, 917
MfeI CAATTG 2 cut(s) 588, 791
MflI RGATCY 3 cut(s) 475, 835, 1096
MhlI GDGCHC 3 cut(s) 131, 271, 282
MluCI AATT 7 cut(s) 433, 588, 709, 769, 791, 1022, 1401
MlyI GAGTC 1 cut(s) 1040
MmeI TCCRAC 1 cut(s) 1374
MroI TCCGGA 1 cut(s) 1352
MseI TTAA 1 cut(s) 1284
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 4 cut(s) 158, 848, 1220, 1353
MspR9I CCNGG 2 cut(s) 612, 1220
MunI CAATTG 2 cut(s) 588, 791
Mva1269I GAATGC 2 cut(s) 736, 775
MvaI CCWGG 1 cut(s) 612
MvnI CGCG 2 cut(s) 96, 571
MwoI GCNNNNNNNGC 4 cut(s) 37, 239, 359, 850
NciI CCSGG 1 cut(s) 1220
NdeII GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
NlaIII CATG 4 cut(s) 749, 876, 956, 1331
NlaIV GGNNCC 3 cut(s) 130, 358, 945
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 876
NspV TTCGAA 1 cut(s) 500
PagI TCATGA 1 cut(s) 745
PaqCI CACCTGC 1 cut(s) 479
PciI ACATGT 1 cut(s) 872
PciSI GCTCTTC 1 cut(s) 216
PctI GAATGC 2 cut(s) 736, 775
PfeI GAWTC 9 cut(s) 367, 502, 908, 977, 1109, 1136, 1198, 1223, 1385
PfoI TCCNGGA 1 cut(s) 1218
PkrI GCNGC 6 cut(s) 163, 208, 338, 736, 739, 889
PleI GAGTC 1 cut(s) 1039
PpsI GAGTC 1 cut(s) 1039
PscI ACATGT 1 cut(s) 872
PshAI GACNNNNGTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 3 cut(s) 130, 358, 945
PspPI GGNCC 1 cut(s) 98
PsrI GAACNNNNNNTAC 2 cut(s) 1008, 1040
PstI CTGCAG 1 cut(s) 1078
PsuI RGATCY 3 cut(s) 475, 835, 1096
RsaI GTAC 3 cut(s) 147, 296, 1173
RsaNI GTAC 3 cut(s) 146, 295, 1172
SalI GTCGAC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 1284
SatI GCNGC 6 cut(s) 162, 207, 337, 735, 738, 888
Sau3AI GATC 7 cut(s) 89, 439, 475, 625, 835, 988, 1096
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 1040
ScrFI CCNGG 2 cut(s) 612, 1220
SduI GDGCHC 3 cut(s) 131, 271, 282
SfaNI GCATC 2 cut(s) 1171, 1182
SfcI CTRYAG 1 cut(s) 1074
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 1308
SmoI CTYRAG 1 cut(s) 1308
Sse9I AATT 7 cut(s) 433, 588, 709, 769, 791, 1022, 1401
StyD4I CCNGG 2 cut(s) 610, 1218
StyI CCWWGG 2 cut(s) 243, 1288
TaqI TCGA 6 cut(s) 109, 200, 260, 500, 505, 1274
TaqII GACCGA 1 cut(s) 658
TasI AATT 7 cut(s) 433, 588, 709, 769, 791, 1022, 1401
TatI WGTACW 1 cut(s) 1171
TauI GCSGC 3 cut(s) 164, 209, 339
TfiI GAWTC 9 cut(s) 367, 502, 908, 977, 1109, 1136, 1198, 1223, 1385
Tru1I TTAA 1 cut(s) 1284
Tru9I TTAA 1 cut(s) 1284
TscAI CASTG 2 cut(s) 71, 925
TseI GCWGC 3 cut(s) 734, 737, 887
TspDTI ATGAA 5 cut(s) 814, 1029, 1101, 1215, 1281
TspGWI ACGGA 3 cut(s) 127, 133, 709
TspRI CASTG 2 cut(s) 71, 925
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 769
XceI RCATGY 1 cut(s) 876
XmiI GTMKAC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.