Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009419

Physical Location & Seq

Genomic Coordinates Forward (+)

19203052 .. 19205285

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTTTCTGCACTAAACTTGGCGGTCACTGGAAACAAGGGGTAAATGTTCCAGTGTCATCAATGCTCGGTTCTCTTCGCTACATGTCCACAAAACTTTATATTGGTGGCCTGTCCCCTGGAACTGACGAGCACTCCTTGAAGGACGCTTTCTCTAGCTTCAATGGAGTGACAGAGGCAAGAGTCATGACAAACAAAGTGACCGGGAGGTCTAGAGGTTATGGATTTGTTAACTTCATAAGCGAGGATTCTGCCAACTCTGCTATTTCAGCAATGAATGGACAGGAGCTGAATGGGTTTAACATAAGTGTGAACGTTGCAAAAGATTGGCCAAGTTTGCCATTGTCTTTGGATGAGAGTATAGAAGAAGCTGAGAAGAAAGAAAATAAGATGATGAGCCGATCTGTATGGAAAGATCCATTCGTTGATGCGTTCCTGATGAAGAAGAAGAATGCAGCTCTGAACAGGAAAATATGGTCAAGGAGATCGACGATTCTTCCCGAGTATGTTGATTCGGCGGTGAGAATCTACAACGGCAAAACTCATGTGCGTTGTAAGATCACAGAGGGGAAAGTTGGGCATAAATTCGGAGAGTTTGCGTTTACAAGAAAAGTGAAGAAGCATGCTAAAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

RRM_1 Ribosomal_S19

Protein Analysis

212

Amino Acids

23.64

Weight (kDa)

9.82

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	33 - 102	1.2e-22	RNA recognition motif
Ribosomal_S19	PF00203	134 - 208	1.7e-25	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47320
fragaria_vesca	FvH4_5g23230
malus_domestica	MD02G1217700.v1.1 MD07G1100000.v1.1
prunus_persica	Prupe.2G123500_v2.0.a1 Prupe.2G123500_v2.0.a1
pyrus_communis	pycom07g08220
rosa_chinensis	RchiOBHm_Chr7g0212161
rosa_laevigata	RLG00000002921
rosa_roxburghii	Rroxscaffold_1G00062470 Rroxscaffold_3G00247060
rosa_rugosa	Rorug07G0131600 Rorug07G0131700
rosa_samantha	Rh2CG529000 Rh5AG255000 Rh5AG419100 Rh7AG264600 Rh7BG259100 Rh7CG281100 Rh7DG271000
rosa_wichuraiana	Rw2G045120 Rw7G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	208
AciI	CCGC	2 cut(s)	24, 518
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	142, 163
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	159, 289, 371, 458
AluI	AGCT	4 cut(s)	159, 289, 371, 458
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	109, 329
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	550
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	2 cut(s)	156, 213
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	120, 205
BmeT110I	CYCGRG	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	120, 205
BmsI	GCATC	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse1I	ACTGG	2 cut(s)	35, 53
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	35, 53
BseXI	GCAGC	1 cut(s)	467
BshFI	GGCC	2 cut(s)	111, 331
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	111, 331
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	401, 415, 485, 558
BspACI	CCGC	2 cut(s)	24, 518
BspANI	GGCC	2 cut(s)	111, 331
BspCNI	CTCAG	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	186
BspPI	GGATC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	35, 53
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	4 cut(s)	401, 415, 485, 558
Bst2UI	CCWGG	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	4 cut(s)	404, 418, 488, 561
BstMBI	GATC	4 cut(s)	401, 415, 485, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 269, 337
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	2 cut(s)	88, 626
BstSCI	CCNGG	2 cut(s)	118, 203
BstV1I	GCAGC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	111, 331
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	28, 60
Cac8I	GCNNGC	1 cut(s)	624
CaiI	CAGNNNCTG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	186
CseI	GACGC	1 cut(s)	155
CviAII	CATG	4 cut(s)	85, 187, 545, 623
CviJI	RGCY	8 cut(s)	5, 111, 159, 289, 331, 371, 399, 458
CviKI_1	RGCY	8 cut(s)	5, 111, 159, 289, 331, 371, 399, 458
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	4 cut(s)	403, 417, 487, 560
DpnII	GATC	4 cut(s)	401, 415, 485, 558
DrdI	GACNNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	118
FaeI	CATG	4 cut(s)	88, 190, 548, 626
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	4 cut(s)	84, 186, 544, 622
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	2 cut(s)	156, 213
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	111, 331
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	88, 190, 548, 626
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	5 cut(s)	183, 248, 493, 512, 525
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	4 cut(s)	90, 232, 313, 603
Hpy188I	TCNGA	2 cut(s)	462, 590
Hpy188III	TCNNGA	4 cut(s)	187, 213, 436, 500
Hpy8I	GTNNAC	4 cut(s)	90, 232, 313, 603
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	3 cut(s)	12, 320, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 269, 337
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	4 cut(s)	88, 190, 548, 626
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	401, 415, 485, 558
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	9 cut(s)	16, 66, 105, 125, 132, 217, 269, 449, 451
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	156, 213
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	26, 169, 199
MalI	GATC	4 cut(s)	403, 417, 487, 560
MboI	GATC	4 cut(s)	401, 415, 485, 558
MboII	GAAGA	8 cut(s)	68, 377, 388, 454, 457, 460, 488, 628
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	331
MluCI	AATT	1 cut(s)	584
MluNI	TGGCCA	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	169, 201, 209, 238, 559
Mox20I	TGGCCA	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	2 cut(s)	231, 300
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	331
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	120, 205
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	260, 269, 337
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	4 cut(s)	401, 415, 485, 558
NlaIII	CATG	4 cut(s)	88, 190, 548, 626
NmuCI	GTSAC	3 cut(s)	26, 169, 199
NspI	RCATGY	2 cut(s)	88, 626
PaeI	GCATGC	1 cut(s)	626
PagI	TCATGA	1 cut(s)	186
PciI	ACATGT	1 cut(s)	84
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	4 cut(s)	248, 493, 512, 525
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	231, 300
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	4 cut(s)	401, 415, 485, 558
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	2 cut(s)	120, 205
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	161, 212, 220, 291, 318, 373, 460
SfaNI	GCATC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	1 cut(s)	584
SsiI	CCGC	2 cut(s)	24, 518
SspMI	CTAG	2 cut(s)	156, 213
StyD4I	CCNGG	2 cut(s)	118, 203
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	488
TasI	AATT	1 cut(s)	584
TfiI	GAWTC	4 cut(s)	248, 493, 512, 525
Tru1I	TTAA	2 cut(s)	231, 300
Tru9I	TTAA	2 cut(s)	231, 300
TscAI	CASTG	2 cut(s)	35, 60
TseFI	GTSAC	3 cut(s)	26, 169, 199
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	3 cut(s)	26, 169, 199
TspDTI	ATGAA	3 cut(s)	226, 290, 455
TspRI	CASTG	2 cut(s)	35, 60
XapI	RAATTY	1 cut(s)	584
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	2 cut(s)	88, 626
XspI	CTAG	2 cut(s)	156, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.