Rroxscaffold_1G00062470

Ribosomal protein S19

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
84562259 .. 84565130
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062470.1

Sequence Viewer

Length: 378 bp
ATGATAGCGTTGTTGCTGAGAAACCCGCCAGAAAATCTATACTTTAAATACCAAAATCCCATTTCAGAGTTGCAGTCATTTCGGGAAGTCTCACCTTTCAGAAGCACACCTCAAGAGGAAGAAGACATGGCAAAGCGTTTGATTTCAATATTCAGCTGTGGTTGGGCTCAAAAACTCCTCCCAACATCCTCCACTAAGCTGGACTCAGGAAAGGCTGTTACTGTGGGACTGGGTGGACAGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGATGGTCATTGGACGTTGGCTATTGTGAATCTGGATGAAGAAACCATTCACTTCATGGATTCGTTAAAGAGGCTACTTCAGGCTAGATCGATTTTACTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.05

Weight (kDa)

6.72

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 239
AciI CCGC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 2 cut(s) 244, 259
AgsI TTSAA 1 cut(s) 147
AluBI AGCT 2 cut(s) 156, 199
AluI AGCT 2 cut(s) 156, 199
Alw26I GTCTC 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 84
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 362
BseGI GGATG 2 cut(s) 185, 313
BseMII CTCAG 2 cut(s) 8, 219
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 362
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 359
BspACI CCGC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 9, 218
BspDI ATCGAT 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 234
BssMI GATC 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 223, 257
BstDEI CTNAG 3 cut(s) 17, 195, 205
BstF5I GGATG 2 cut(s) 185, 313
BstKTI GATC 1 cut(s) 362
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 362
BsuTUI ATCGAT 1 cut(s) 362
BtsCI GGATG 2 cut(s) 185, 313
BveI ACCTGC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 362
Csp6I GTAC 2 cut(s) 243, 258
CviAII CATG 2 cut(s) 127, 328
CviJI RGCY 7 cut(s) 156, 167, 199, 215, 293, 346, 356
CviKI_1 RGCY 7 cut(s) 156, 167, 199, 215, 293, 346, 356
CviQI GTAC 2 cut(s) 243, 258
DdeI CTNAG 3 cut(s) 17, 195, 205
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
DraI TTTAAA 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 2 cut(s) 130, 331
FaiI YATR 3 cut(s) 40, 128, 329
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 126, 327
FauI CCCGC 1 cut(s) 33
FokI GGATG 2 cut(s) 172, 320
FriOI GRGCYC 1 cut(s) 169
FspBI CTAG 1 cut(s) 357
Hin1II CATG 2 cut(s) 130, 331
HinfI GANTC 3 cut(s) 203, 301, 332
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 67, 101
Hpy188III TCNNGA 4 cut(s) 83, 113, 207, 305
Hpy8I GTNNAC 1 cut(s) 236
HpyCH4III ACNGT 2 cut(s) 223, 257
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 1 cut(s) 73
HpyF3I CTNAG 3 cut(s) 17, 195, 205
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 2 cut(s) 130, 331
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 7 cut(s) 42, 185, 192, 215, 234, 290, 338
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 217, 251
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 3 cut(s) 131, 134, 323
MhlI GDGCHC 1 cut(s) 169
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 5 cut(s) 109, 120, 188, 199, 336
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 2 cut(s) 45, 338
MspA1I CMGCKG 1 cut(s) 156
NdeII GATC 1 cut(s) 359
NlaIII CATG 2 cut(s) 130, 331
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 301, 332
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 2 cut(s) 244, 259
RsaNI GTAC 2 cut(s) 243, 258
SaqAI TTAA 2 cut(s) 45, 338
Sau3AI GATC 1 cut(s) 359
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 169
SetI ASST 6 cut(s) 97, 112, 158, 201, 253, 290
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SsiI CCGC 1 cut(s) 26
SspI AATATT 1 cut(s) 150
SspMI CTAG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 223, 257
TaiI ACGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 362
TatI WGTACW 1 cut(s) 242
TfiI GAWTC 2 cut(s) 301, 332
Tru1I TTAA 2 cut(s) 45, 338
Tru9I TTAA 2 cut(s) 45, 338
TspDTI ATGAA 2 cut(s) 316, 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.