RLG00000002921

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009419
Physical Location & Seq
Reverse (-)
41804360 .. 41807598
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002921

Sequence Viewer

Length: 402 bp
ATGTGCCCTAGTTGTTGGGCTGTTCTAGCTCAGAGTACTTTAGTATCGGTTAAGATTCTTATCATGTGGTCGAAGCTGATGGAATATGGTTTCAGTTCCTCCAATTGGATGCCTGTTGCAAATGTGCCAAGTTGTTTTACAAGTTTTATAGTCTCGCCTTTCACAAGCACGAATCAAGAGGAAGACATGGCAAAGCGTTTGATTTCAATCTTCAGCCGTGGTTGGGCTCAAAAACTCCTCCCAACGTTCTCCACTAAGCTGGACTCAGGAAAGGCTGTTACTGTGGGACTGGGTGGACAGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGAATCTCATTTTTATGATGTGAAGAAACCAGAAGATCTCCAATGCATTAGAGAAAATCTCCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

8.37

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 299
AclI AACGTT 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 3 cut(s) 37, 304, 319
AfiI CCNNNNNNNGG 2 cut(s) 105, 223
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 3 cut(s) 29, 76, 259
AluI AGCT 3 cut(s) 29, 76, 259
Alw26I GTCTC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 189
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 9, 26
BfuAI ACCTGC 1 cut(s) 299
BglII AGATCT 1 cut(s) 367
BmcAI AGTACT 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 1 cut(s) 375
BsaBI GATNNNNATC 2 cut(s) 59, 206
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 223
Bse1I ACTGG 1 cut(s) 294
Bse8I GATNNNNATC 2 cut(s) 59, 206
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 2 cut(s) 59, 206
BseLI CCNNNNNNNGG 2 cut(s) 105, 223
BseMII CTCAG 2 cut(s) 44, 279
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 105, 223
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 8, 229
Bsp143I GATC 2 cut(s) 367, 396
BspCNI CTCAG 2 cut(s) 43, 278
BspMI ACCTGC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 2 cut(s) 367, 396
Bst4CI ACNGT 2 cut(s) 283, 317
BstDEI CTNAG 3 cut(s) 30, 255, 265
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 2 cut(s) 370, 399
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 367, 396
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 299
Csp6I GTAC 3 cut(s) 36, 303, 318
CviAII CATG 2 cut(s) 64, 187
CviJI RGCY 7 cut(s) 20, 29, 76, 216, 227, 259, 275
CviKI_1 RGCY 7 cut(s) 20, 29, 76, 216, 227, 259, 275
CviQI GTAC 3 cut(s) 36, 303, 318
DdeI CTNAG 3 cut(s) 30, 255, 265
DpnI GATC 2 cut(s) 369, 398
DpnII GATC 2 cut(s) 367, 396
Eco24I GRGCYC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 229
FaeI CATG 2 cut(s) 67, 190
FaiI YATR 5 cut(s) 65, 87, 149, 188, 348
FaqI GGGAC 1 cut(s) 300
FatI CATG 2 cut(s) 63, 186
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 229
FspBI CTAG 2 cut(s) 9, 26
Hin1II CATG 2 cut(s) 67, 190
HinfI GANTC 4 cut(s) 55, 172, 263, 335
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 176, 267, 394
Hpy8I GTNNAC 1 cut(s) 296
HpyCH4III ACNGT 2 cut(s) 283, 317
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 119, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 3 cut(s) 30, 255, 265
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 2 cut(s) 67, 190
Kzo9I GATC 2 cut(s) 367, 396
LpnPI CCDG 6 cut(s) 126, 245, 252, 275, 294, 375
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 9, 26
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 277, 311
MalI GATC 2 cut(s) 369, 398
MboI GATC 2 cut(s) 367, 396
MboII GAAGA 4 cut(s) 194, 202, 367, 377
MfeI CAATTG 1 cut(s) 103
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 8, 229
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 3 cut(s) 109, 172, 248
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 345
MunI CAATTG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 2 cut(s) 367, 396
NlaIII CATG 2 cut(s) 67, 190
NsiI ATGCAT 1 cut(s) 380
PfeI GAWTC 3 cut(s) 55, 172, 335
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp1406I AACGTT 1 cut(s) 245
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 3 cut(s) 37, 304, 319
RsaNI GTAC 3 cut(s) 36, 303, 318
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 2 cut(s) 367, 396
ScaI AGTACT 1 cut(s) 37
SchI GAGTC 1 cut(s) 257
SduI GDGCHC 2 cut(s) 8, 229
SetI ASST 5 cut(s) 31, 78, 248, 261, 313
SfaNI GCATC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 1 cut(s) 103
SspMI CTAG 2 cut(s) 9, 26
TaaI ACNGT 2 cut(s) 283, 317
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 103
TatI WGTACW 2 cut(s) 35, 302
TfiI GAWTC 3 cut(s) 55, 172, 335
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
XspI CTAG 2 cut(s) 9, 26
ZrmI AGTACT 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.