Rroxscaffold_3G00247060

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009419
Physical Location & Seq
Reverse (-)
40391987 .. 40394601
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247060.1

Sequence Viewer

Length: 438 bp
ATGGCAAAGCGTCTGATTTCAATCTTCAGCCGAGGTTGGGCTCAAAAACTCCTCCCAACGTCCTCCACTAAGCTGGACTTAGGAAAGGCTGTTACTGTGGGACTGGGTGGACAGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGAATCTCATTTTTATGATGGTGCCTTTGTGGATGCATTCCTGATGAAAATGAAAAACAACAAAGAGCTTCTTATGAATAAGAAAATCTGGTCCCGGAGATCTACTATTTTGCCGGAATTCGTTGGCTGCACTGTTCGCATTTATAATGGAAAAACTCATGTTCGTTGCAAAATCACTGAAGAAAAGGTCGGTCACAAATTTGGAGAATTTGCTATGACACGAAAACGGAGACTTCCAATGAAAAATGCTGCACCACTAAGAAAAGCGAATAAAACTGGCAAGAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

145

Amino Acids

16.4

Weight (kDa)

10.55

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19 PF00203 56 - 126 3e-25 Ribosomal protein S19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 167
AcsI RAATTY 3 cut(s) 263, 344, 353
AcuI CTGAAG 2 cut(s) 10, 345
AfaI GTAC 2 cut(s) 118, 133
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 2 cut(s) 73, 214
AluI AGCT 2 cut(s) 73, 214
Alw26I GTCTC 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 273, 395
ApoI RAATTY 3 cut(s) 263, 344, 353
AspS9I GGNCC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 241
AvaII GGWCC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 260, 382
BccI CCATC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 245
BisI GCNGC 2 cut(s) 274, 396
BlsI GCNGC 2 cut(s) 275, 397
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 169, 239
BmrFI CCNGG 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 108, 427
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 2 cut(s) 108, 427
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 260, 382
BsgI GTGCAG 2 cut(s) 259, 381
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 241, 260
BslFI GGGAC 2 cut(s) 114, 223
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 2 cut(s) 114, 223
BsmI GAATGC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 245
BspLI GGNNCC 2 cut(s) 169, 239
BspMI ACCTGC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 108, 427
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 245
Bst4CI ACNGT 3 cut(s) 97, 131, 280
BstDEI CTNAG 3 cut(s) 69, 79, 404
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 248
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 260, 382
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 245
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 276, 321
BveI ACCTGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 117, 132
CviAII CATG 1 cut(s) 305
CviJI RGCY 6 cut(s) 30, 41, 73, 89, 214, 273
CviKI_1 RGCY 6 cut(s) 30, 41, 73, 89, 214, 273
CviQI GTAC 2 cut(s) 117, 132
DdeI CTNAG 3 cut(s) 69, 79, 404
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 10, 345
EcoRI GAATTC 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 1 cut(s) 308
FaiI YATR 5 cut(s) 162, 221, 291, 306, 362
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 201, 233
FaqI GGGAC 2 cut(s) 114, 223
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 274, 396
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 274, 396
GluI GCNGC 2 cut(s) 274, 396
HapII CCGG 2 cut(s) 241, 260
Hin1II CATG 1 cut(s) 308
HinfI GANTC 1 cut(s) 149
HpaII CCGG 2 cut(s) 241, 260
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 110
HpyCH4III ACNGT 3 cut(s) 97, 131, 280
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 182, 276, 315, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 3 cut(s) 69, 79, 404
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 8 cut(s) 59, 89, 108, 200, 220, 254, 273, 408
Lsp1109I GCAGC 2 cut(s) 260, 382
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 3 cut(s) 91, 125, 338
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 2 cut(s) 16, 338
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 3 cut(s) 263, 344, 353
MnlI CCTC 3 cut(s) 26, 62, 73
Mph1103I ATGCAT 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 2 cut(s) 241, 260
MspR9I CCNGG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 241
NdeII GATC 1 cut(s) 245
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 169, 239
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 184
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 2 cut(s) 275, 397
PsiI TTATAA 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 169, 239
PspPI GGNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 118, 133
RsaNI GTAC 2 cut(s) 117, 132
RseI CAYNNNNRTG 1 cut(s) 159
SatI GCNGC 2 cut(s) 274, 396
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 43
SetI ASST 6 cut(s) 37, 62, 75, 127, 216, 336
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 3 cut(s) 263, 344, 353
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 97, 131, 280
TaiI ACGT 1 cut(s) 62
TaqII GACCGA 1 cut(s) 326
TasI AATT 3 cut(s) 263, 344, 353
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 2 cut(s) 283, 328
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 2 cut(s) 273, 395
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 4 cut(s) 206, 212, 236, 401
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 2 cut(s) 283, 328
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 3 cut(s) 263, 344, 353
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.