FvH4_5g23230

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009419
Physical Location & Seq
Forward (+)
14593797 .. 14596924
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23230.t1

Sequence Viewer

Length: 438 bp
ATGGCAAAGCGTCTGATTTCACTCTTCAGCCGTGGTTGGGCTCAGAATCTCCTCCCAACATCCTCCACTAAGCTGGACTCAAGGAAGGCTTTTTCTGTGGGACTGGGTGGACTGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGAATCTCATTATTATGATGGTGCCTTTGTGGATGCATTCCTGATGAAAATGAAAACCAACAAAGAACTTCTTATGAACAAGAAAATCTGGTCCCGCAGATCTACTATTTTACCGGAATTTGTTGGCTGCACTGTTCGCATTTATAATGGAAAAACTCATGTTCGTTGCAAAATCACTGAAGAAAAGGTGGGTCACAAATTTGGAGAATTTGCTATGACACGGAAACGAAGGCTGCCAATGAAAAATGCTGCACCACTAAGAAAAGCGAATAAAACTGGCAAGAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

146

Amino Acids

16.48

Weight (kDa)

10.55

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19 PF00203 56 - 126 4.1e-25 Ribosomal protein S19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 1 cut(s) 241
AcsI RAATTY 3 cut(s) 263, 344, 353
AcuI CTGAAG 2 cut(s) 10, 345
AfaI GTAC 2 cut(s) 118, 133
AfiI CCNNNNNNNGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
ApeKI GCWGC 3 cut(s) 273, 379, 395
ApoI RAATTY 3 cut(s) 263, 344, 353
AspS9I GGNCC 1 cut(s) 237
AvaII GGWCC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 43
BbvI GCAGC 3 cut(s) 260, 366, 382
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 245
BisI GCNGC 3 cut(s) 274, 380, 396
BlsI GCNGC 3 cut(s) 275, 381, 397
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 169, 239
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 108, 427
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 59, 184
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 56, 104
BseNI ACTGG 2 cut(s) 108, 427
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 260, 366, 382
BsgI GTGCAG 2 cut(s) 259, 381
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 2 cut(s) 114, 223
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 114, 223
BsmI GAATGC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 2 cut(s) 55, 105
BspLI GGNNCC 2 cut(s) 169, 239
BspMI ACCTGC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 108, 427
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 131, 280
Bst6I CTCTTC 1 cut(s) 29
BstDEI CTNAG 4 cut(s) 42, 69, 113, 404
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 59, 184
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 260, 366, 382
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 2 cut(s) 59, 184
BtsIMutI CAGTG 2 cut(s) 276, 321
BveI ACCTGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 117, 132
CviAII CATG 1 cut(s) 305
CviJI RGCY 6 cut(s) 30, 41, 73, 89, 273, 379
CviKI_1 RGCY 6 cut(s) 30, 41, 73, 89, 273, 379
CviQI GTAC 2 cut(s) 117, 132
DdeI CTNAG 4 cut(s) 42, 69, 113, 404
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 10, 345
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 1 cut(s) 308
FaiI YATR 5 cut(s) 162, 221, 291, 306, 362
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 201, 233
FaqI GGGAC 2 cut(s) 114, 223
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 274, 380, 396
FokI GGATG 2 cut(s) 46, 191
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 274, 380, 396
GluI GCNGC 3 cut(s) 274, 380, 396
HapII CCGG 1 cut(s) 260
Hin1II CATG 1 cut(s) 308
HinfI GANTC 3 cut(s) 46, 77, 149
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 15, 45
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 79, 369
HpyCH4III ACNGT 2 cut(s) 131, 280
HpyCH4V TGCA 4 cut(s) 182, 276, 315, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 4 cut(s) 42, 69, 113, 404
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 7 cut(s) 59, 89, 108, 200, 220, 273, 408
Lsp1109I GCAGC 3 cut(s) 260, 366, 382
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 125, 338
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 2 cut(s) 16, 338
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 3 cut(s) 263, 344, 353
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 62, 73
Mph1103I ATGCAT 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeII GATC 1 cut(s) 245
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 169, 239
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 184
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 46, 149
PkrI GCNGC 3 cut(s) 275, 381, 397
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PsiI TTATAA 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 169, 239
PspPI GGNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 118, 133
RsaNI GTAC 2 cut(s) 117, 132
RseI CAYNNNNRTG 1 cut(s) 159
SatI GCNGC 3 cut(s) 274, 380, 396
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 75, 127, 336
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 3 cut(s) 263, 344, 353
SsiI CCGC 1 cut(s) 241
TaaI ACNGT 2 cut(s) 131, 280
TasI AATT 3 cut(s) 263, 344, 353
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 2 cut(s) 46, 149
TscAI CASTG 2 cut(s) 283, 328
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 3 cut(s) 273, 379, 395
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 4 cut(s) 206, 212, 236, 401
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 2 cut(s) 283, 328
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 3 cut(s) 263, 344, 353
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.