Prupe.2G123500_v2.0.a1

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009419
Physical Location & Seq
Reverse (-)
17986139 .. 17986966
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G123500.1

Sequence Viewer

Length: 447 bp
ATGGCAAAGCGTCTAATTTCAACCTTTAACCATGGGCTAGTTGGCAAACTCTTTTCCGAGTCCTTCACCAAGCTGAACTCCGGAAAGGCAGCGGCTGTGGGATTGGGTAAACAGGACAAAGCAGGTTACAGTACGCAGGCCAAGCAAGATAGGTCTCATTTTTACGACGGTGCTTTTGTGGATGCATTCTTGATGAAAATGAAGAACAACAAAGATCTTCTTATGAATAAGAAAATTTGGTCGCGGAGATCTACAATTTTGCCAGAATTCGTGGGTTCTACAGTTCGTATTTATAATGGAAAGGTTCATTTTCGTTGCAAGATCACTGAAGAAAAGGTTGGACATAAATTTGGAGAATTTGCAATGACACGGAAACGTAGAGTTCATGCTAAAACTACTGGACCAGCAAGACCAACAAAACCAGGAAAAAAAGCAGGCAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

10.59

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
Acc36I ACCTGC 1 cut(s) 113
AccII CGCG 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 2 cut(s) 92, 244
AcsI RAATTY 4 cut(s) 234, 266, 347, 356
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 4 cut(s) 234, 266, 347, 356
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 2 cut(s) 214, 248
BisI GCNGC 2 cut(s) 90, 93
BlsI GCNGC 2 cut(s) 91, 94
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 403
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 159
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 3 cut(s) 214, 248, 321
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 2 cut(s) 92, 244
BspANI GGCC 1 cut(s) 140
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 3 cut(s) 214, 248, 321
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 131, 170, 283
BstC8I GCNNGC 2 cut(s) 138, 436
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 3 cut(s) 217, 251, 324
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 214, 248, 321
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 2 cut(s) 214, 248
BstYI RGATCY 2 cut(s) 214, 248
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 138, 436
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 32, 386
CviJI RGCY 4 cut(s) 37, 73, 95, 140
CviKI_1 RGCY 4 cut(s) 37, 73, 95, 140
CviQI GTAC 1 cut(s) 132
DpnI GATC 3 cut(s) 216, 250, 323
DpnII GATC 3 cut(s) 214, 248, 321
Eco130I CCWWGG 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 35, 389
FaiI YATR 5 cut(s) 33, 224, 294, 345, 387
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 2 cut(s) 31, 385
Fnu4HI GCNGC 2 cut(s) 90, 93
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 90, 93
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 90, 93
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 35, 389
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 81, 190
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 131, 170, 283
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 185, 318, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 2 cut(s) 35, 389
Kpn2I TCCGGA 1 cut(s) 80
Kzo9I GATC 3 cut(s) 214, 248, 321
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 216, 250, 323
MboI GATC 3 cut(s) 214, 248, 321
MboII GAAGA 3 cut(s) 209, 214, 341
MflI RGATCY 2 cut(s) 214, 248
MluCI AATT 6 cut(s) 15, 234, 255, 266, 347, 356
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 319
Mph1103I ATGCAT 1 cut(s) 187
MroI TCCGGA 1 cut(s) 80
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 142
NcoI CCATGG 1 cut(s) 31
NdeII GATC 3 cut(s) 214, 248, 321
NlaIII CATG 2 cut(s) 35, 389
NsiI ATGCAT 1 cut(s) 187
PctI GAATGC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 91, 94
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PsiI TTATAA 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 2 cut(s) 214, 248
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 90, 93
Sau3AI GATC 3 cut(s) 214, 248, 321
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 423
SetI ASST 7 cut(s) 26, 75, 127, 155, 306, 339, 379
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 401
Sse9I AATT 6 cut(s) 15, 234, 255, 266, 347, 356
SsiI CCGC 2 cut(s) 92, 244
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 3 cut(s) 131, 170, 283
TaiI ACGT 1 cut(s) 379
TasI AATT 6 cut(s) 15, 234, 255, 266, 347, 356
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 331
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 5 cut(s) 209, 215, 239, 296, 374
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 4 cut(s) 234, 266, 347, 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.