Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009419

Physical Location & Seq

Genomic Coordinates Reverse (-)

33116766 .. 33121380

Gene Structure 4615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAAAGCGTCTGATTTCAATCTTCAGCCGTGGTTGGGCTCAAAAACTCCTCCCAACATCCTCCACTAAGCTGAACTCAGGAAAGGCTGTTACTGTGGGACTGGGTGGACAGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGAAAAAGGAAACCTTGTGATTTTCACTGGATGGATTTTGTGCACATCTCATTTTTATGATGGTGCCTTTGTGGATGCATTCCTGATGAAAATGAAAAACAACAAAGAGCTTCTTATGAATAAGAAAATCTGGTCTTGGAGATCTACTATTTTCAGGAGAGTTGGAAAACGAAAGATTGGATTTATTGAAGATTTTGAAAGCATGTTTCTGAAATCTTGGACAGAAGACCATTTGAGCATACAGAATTGGATCGAAGACTTATTTTGGAAACAACTTGATATAAATTACCTTGGCATGCCTAATGCAATGGTACTTATTGCAGTGAAGGACTCCCGCATTGGACGCAAGAAGTTAATTAACCATAATGTCGTACGTACCAAAGCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

178

Amino Acids

20.42

Weight (kDa)

10.15

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47320
fragaria_vesca	FvH4_5g23230
malus_domestica	MD02G1217700.v1.1 MD07G1100000.v1.1
prunus_persica	Prupe.2G123500_v2.0.a1 Prupe.2G123500_v2.0.a1
pyrus_communis	pycom07g08220
rosa_chinensis	RchiOBHm_Chr7g0212161
rosa_laevigata	RLG00000002921
rosa_roxburghii	Rroxscaffold_1G00062470 Rroxscaffold_3G00247060
rosa_rugosa	Rorug07G0131600 Rorug07G0131700
rosa_samantha	Rh2CG529000 Rh5AG255000 Rh5AG419100 Rh7AG264600 Rh7BG259100 Rh7CG281100 Rh7DG271000
rosa_wichuraiana	Rw2G045120 Rw7G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	2 cut(s)	481, 530
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	10
AfaI	GTAC	5 cut(s)	118, 133, 459, 519, 523
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	21, 335, 344
AluBI	AGCT	2 cut(s)	73, 256
AluI	AGCT	2 cut(s)	73, 256
Alw21I	GWGCWC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	404
ApaLI	GTGCAC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	2 cut(s)	378, 408
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	2 cut(s)	171, 200
BceAI	ACGGC	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	2 cut(s)	378, 408
BsaAI	YACGTR	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	31, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	108, 178
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	31, 436
BseGI	GGATG	3 cut(s)	59, 182, 226
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	108, 178
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	191
BsiWI	CGTACG	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	43, 191
Bsp143I	GATC	2 cut(s)	287, 396
BspACI	CCGC	2 cut(s)	481, 530
BspCNI	CTCAG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	108, 178
BssECI	CCNNGG	2 cut(s)	31, 436
BssMI	GATC	2 cut(s)	287, 396
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	97, 131
BstBAI	YACGTR	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	69, 79
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	3 cut(s)	59, 182, 226
BstKTI	GATC	2 cut(s)	290, 399
BstMBI	GATC	2 cut(s)	287, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNSI	RCATGY	2 cut(s)	352, 445
BstSLI	GKGCMC	1 cut(s)	191
BstSNI	TACGTA	1 cut(s)	521
BstV2I	GAAGAC	2 cut(s)	378, 408
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	59, 182, 226
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	171, 474
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	443
CseI	GACGC	1 cut(s)	498
Csp6I	GTAC	5 cut(s)	117, 132, 458, 518, 522
CviAII	CATG	2 cut(s)	349, 442
CviJI	RGCY	5 cut(s)	30, 41, 73, 89, 256
CviKI_1	RGCY	5 cut(s)	30, 41, 73, 89, 256
CviQI	GTAC	5 cut(s)	117, 132, 458, 518, 522
DdeI	CTNAG	2 cut(s)	69, 79
DpnI	GATC	2 cut(s)	289, 398
DpnII	GATC	2 cut(s)	287, 396
Eco105I	TACGTA	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	2 cut(s)	352, 445
FaiI	YATR	8 cut(s)	204, 263, 350, 386, 428, 443, 510, 535
FalI	AAGNNNNNCTT	4 cut(s)	144, 176, 243, 275
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	348, 441
FauI	CCCGC	1 cut(s)	488
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	3 cut(s)	46, 189, 233
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	531
GluI	GCNGC	1 cut(s)	531
HgaI	GACGC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	352, 445
HinfI	GANTC	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	110, 189
Hpy188I	TCNGA	2 cut(s)	15, 357
Hpy188III	TCNNGA	3 cut(s)	81, 229, 301
Hpy8I	GTNNAC	2 cut(s)	110, 189
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	2 cut(s)	97, 131
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	4 cut(s)	189, 224, 452, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	2 cut(s)	69, 79
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	2 cut(s)	352, 445
Kzo9I	GATC	2 cut(s)	287, 396
LpnPI	CCDG	7 cut(s)	66, 89, 108, 159, 242, 262, 286
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	2 cut(s)	91, 125
MalI	GATC	2 cut(s)	289, 398
MboI	GATC	2 cut(s)	287, 396
MboII	GAAGA	4 cut(s)	16, 347, 383, 413
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	43, 191
MluCI	AATT	3 cut(s)	391, 430, 501
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	62, 73
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	2 cut(s)	500, 504
MslI	CAYNNNNRTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	489
NdeII	GATC	2 cut(s)	287, 396
NlaIII	CATG	2 cut(s)	352, 445
NlaIV	GGNNCC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	2 cut(s)	352, 445
PacI	TTAATTAA	1 cut(s)	504
PaeI	GCATGC	1 cut(s)	445
PctI	GAATGC	1 cut(s)	224
Pfl23II	CGTACG	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	521
PspLI	CGTACG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	5 cut(s)	118, 133, 459, 519, 523
RsaNI	GTAC	5 cut(s)	117, 132, 458, 518, 522
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	500, 504
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	2 cut(s)	287, 396
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	2 cut(s)	43, 191
SetI	ASST	6 cut(s)	75, 127, 162, 258, 438, 523
SfaNI	GCATC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	201
SnaBI	TACGTA	1 cut(s)	521
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	3 cut(s)	391, 430, 501
SsiI	CCGC	2 cut(s)	481, 530
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	97, 131
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	399
TasI	AATT	3 cut(s)	391, 430, 501
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	500, 504
Tru9I	TTAA	2 cut(s)	500, 504
TscAI	CASTG	2 cut(s)	178, 474
TspDTI	ATGAA	3 cut(s)	248, 254, 278
TspRI	CASTG	2 cut(s)	178, 474
VneI	GTGCAC	1 cut(s)	187
XceI	RCATGY	2 cut(s)	352, 445
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.