Rh7CG281100

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009419
Physical Location & Seq
Forward (+)
28483666 .. 28486293
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG281100.1

Sequence Viewer

Length: 498 bp
ATGTATTTCTCATGGTGGAATTTTTTTTATTTTAATTGTCATGAAACAGAGGAAGAAGACATGGCAAAGCGTCTGATTTCAATCTTCAGCCGTGGTTGGGCTCAAAAACTCCTCCCAACATCCTCCACTAAGCTGGACTCAGGAAAGGCTGTTACTGTGGGACTGGGTGGACAGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGAATCTCATTTTTATGATGGTGCCTTTGTGGATGCATTCCTGATGAAAATGAAAAACAACAAAGAGCTTCTTATGAATAAGAAAATCTGGTCCCGGAGATCTACTATTTTGCCGGAATTCGTTGGCTGCACTGTTCGCATTTATAATGGAAAAACTCATGTTCGTTGCAAAATCACTGAAGAAAAGGTCGGTCACAAATTTGGAGAATTTGCTATGACACGAAAACGGAGACTTCCAATGAAAAATGCTGCACCACTAAGAAAAGCGAATAAAACTGGCAAGAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

165

Amino Acids

19.08

Weight (kDa)

10.01

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19 PF00203 76 - 146 4.1e-25 Ribosomal protein S19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 227
AcsI RAATTY 4 cut(s) 19, 323, 404, 413
AcuI CTGAAG 2 cut(s) 70, 405
AfaI GTAC 2 cut(s) 178, 193
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 81
AluBI AGCT 2 cut(s) 133, 274
AluI AGCT 2 cut(s) 133, 274
Alw26I GTCTC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 333, 455
ApoI RAATTY 4 cut(s) 19, 323, 404, 413
AspS9I GGNCC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 301
AvaII GGWCC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 320, 442
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 75
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 430
BfuAI ACCTGC 1 cut(s) 173
BglII AGATCT 1 cut(s) 305
BisI GCNGC 2 cut(s) 334, 456
BlsI GCNGC 2 cut(s) 335, 457
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 229, 299
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 168, 487
Bse8I GATNNNNATC 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 119, 244
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 168, 487
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 320, 442
BsgI GTGCAG 2 cut(s) 319, 441
BshNI GGYRCC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 301, 320
BslFI GGGAC 2 cut(s) 174, 283
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 430
BsmFI GGGAC 2 cut(s) 174, 283
BsmI GAATGC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 229, 299
BspMI ACCTGC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 227
BsrI ACTGG 2 cut(s) 168, 487
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 157, 191, 340
BstDEI CTNAG 3 cut(s) 129, 139, 464
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 119, 244
BstKTI GATC 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 320, 442
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 119, 244
BtsIMutI CAGTG 2 cut(s) 336, 381
BveI ACCTGC 1 cut(s) 173
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 297
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 177, 192
CviAII CATG 4 cut(s) 12, 41, 61, 365
CviJI RGCY 6 cut(s) 90, 101, 133, 149, 274, 333
CviKI_1 RGCY 6 cut(s) 90, 101, 133, 149, 274, 333
CviQI GTAC 2 cut(s) 177, 192
DdeI CTNAG 3 cut(s) 129, 139, 464
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 70, 405
EcoRI GAATTC 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 4 cut(s) 15, 44, 64, 368
FaiI YATR 8 cut(s) 13, 42, 62, 222, 281, 351, 366, 422
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 2 cut(s) 174, 283
FatI CATG 4 cut(s) 11, 40, 60, 364
Fnu4HI GCNGC 2 cut(s) 334, 456
FokI GGATG 2 cut(s) 106, 251
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 334, 456
GluI GCNGC 2 cut(s) 334, 456
HapII CCGG 2 cut(s) 301, 320
HgaI GACGC 1 cut(s) 59
Hin1II CATG 4 cut(s) 15, 44, 64, 368
HinfI GANTC 2 cut(s) 137, 209
HpaII CCGG 2 cut(s) 301, 320
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 41, 141, 247
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 157, 191, 340
HpyCH4V TGCA 4 cut(s) 242, 336, 375, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 3 cut(s) 129, 139, 464
Hsp92II CATG 4 cut(s) 15, 44, 64, 368
Kzo9I GATC 1 cut(s) 305
LpnPI CCDG 9 cut(s) 119, 126, 149, 168, 260, 280, 314, 333, 468
Lsp1109I GCAGC 2 cut(s) 320, 442
LweI GCATC 1 cut(s) 229
MaeIII GTNAC 3 cut(s) 151, 185, 398
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 4 cut(s) 65, 68, 76, 398
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 5 cut(s) 19, 34, 323, 404, 413
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 3 cut(s) 43, 122, 133
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 2 cut(s) 301, 320
MspR9I CCNGG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 301
NdeII GATC 1 cut(s) 305
NlaIII CATG 4 cut(s) 15, 44, 64, 368
NlaIV GGNNCC 2 cut(s) 229, 299
NmuCI GTSAC 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 244
PagI TCATGA 1 cut(s) 40
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 299
PkrI GCNGC 2 cut(s) 335, 457
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PsiI TTATAA 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 229, 299
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 2 cut(s) 178, 193
RsaNI GTAC 2 cut(s) 177, 192
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 334, 456
Sau3AI GATC 1 cut(s) 305
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 103
SetI ASST 4 cut(s) 135, 187, 276, 396
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 5 cut(s) 19, 34, 323, 404, 413
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 3 cut(s) 157, 191, 340
TaqII GACCGA 1 cut(s) 386
TasI AATT 5 cut(s) 19, 34, 323, 404, 413
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 2 cut(s) 343, 388
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 333, 455
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 5 cut(s) 57, 266, 272, 296, 461
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 2 cut(s) 343, 388
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 4 cut(s) 19, 323, 404, 413
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.