MD07G1100000.v1.1

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009419
Physical Location & Seq
Reverse (-)
11010728 .. 11012488
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1100000.v1.1.491

Sequence Viewer

Length: 444 bp
ATGGCAAGGCGTCTAATTGCAACCCTCAATCGTGGCCTAGTTGGCAAACTCTTCTCCGAGTCCTCTACCAAGCTGGACTCAGGAAAGCCGGTGGTTGCGGGAATGTGTGGACTGGACAAAGCAGGTTACAGTACCCAAGCCAAGCAAGAATCTCATTTTTACGATGGCGCTTTTGTGGATGCATTCCTGATGAAAATGAAGAACAACAAGGATCTCCTTAACAATAAGAAAATTTGGTCACGCAGATCTACTATTTTGCCAGAATTCGTGGGTACTACAGTCCGTATCTATAATGGAAAAAATCATATTCGCTGCAAGATCACTGAAGAGAAGGTTGGTCATAAATTTGGAGAGTTTGCAATGACACGGAAACGAAGAGTTCAGGCTAAAACTACTGCACCAGTAAGACCAGTGAAACCGGGAAAAAAAGCAGGCAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

148

Amino Acids

16.46

Weight (kDa)

10.45

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19 PF00203 56 - 126 7.2e-25 Ribosomal protein S19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 3 cut(s) 231, 263, 344
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 2 cut(s) 133, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 219
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 3 cut(s) 231, 263, 344
AspLEI GCGC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 420
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 420
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 42
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 10
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 117, 401, 410
Bse3DI GCAATG 1 cut(s) 366
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 3 cut(s) 117, 401, 410
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 381
BshFI GGCC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 89, 419
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 211, 245, 318
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 3 cut(s) 117, 401, 410
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 3 cut(s) 211, 245, 318
BssNI GRCGYC 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 131, 280
Bst6I CTCTTC 3 cut(s) 56, 321, 370
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 3 cut(s) 214, 248, 321
BstMBI GATC 3 cut(s) 211, 245, 318
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 2 cut(s) 211, 245
BstYI RGATCY 2 cut(s) 211, 245
BsuRI GGCC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 321, 417
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 2 cut(s) 132, 273
CviJI RGCY 5 cut(s) 36, 73, 88, 140, 386
CviKI_1 RGCY 5 cut(s) 36, 73, 88, 140, 386
CviQI GTAC 2 cut(s) 132, 273
DdeI CTNAG 1 cut(s) 79
DpnI GATC 3 cut(s) 213, 247, 320
DpnII GATC 3 cut(s) 211, 245, 318
Eam1104I CTCTTC 3 cut(s) 56, 321, 370
EarI CTCTTC 3 cut(s) 56, 321, 370
Eco57I CTGAAG 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 184
FaiI YATR 3 cut(s) 291, 306, 342
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 36
HapII CCGG 2 cut(s) 89, 419
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 10
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 3 cut(s) 59, 77, 149
HpaII CCGG 2 cut(s) 89, 419
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 81, 187
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 131, 280
HpyCH4V TGCA 5 cut(s) 20, 182, 315, 359, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 10
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 3 cut(s) 211, 245, 318
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 125, 237
MalI GATC 3 cut(s) 213, 247, 320
MboI GATC 3 cut(s) 211, 245, 318
MboII GAAGA 4 cut(s) 43, 211, 338, 387
MflI RGATCY 2 cut(s) 211, 245
MluCI AATT 4 cut(s) 15, 231, 263, 344
MlyI GAGTC 2 cut(s) 68, 71
MnlI CCTC 2 cut(s) 35, 73
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 1 cut(s) 219
MspI CCGG 2 cut(s) 89, 419
MspR9I CCNGG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 420
NdeII GATC 3 cut(s) 211, 245, 318
NmuCI GTSAC 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 184
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 2 cut(s) 67, 71
PpsI GAGTC 2 cut(s) 67, 71
PsuI RGATCY 2 cut(s) 211, 245
RsaI GTAC 2 cut(s) 133, 274
RsaNI GTAC 2 cut(s) 132, 273
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 3 cut(s) 211, 245, 318
SchI GAGTC 2 cut(s) 68, 71
ScrFI CCNGG 1 cut(s) 420
SetI ASST 3 cut(s) 75, 127, 336
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 276
Sse9I AATT 4 cut(s) 15, 231, 263, 344
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 131, 280
TasI AATT 4 cut(s) 15, 231, 263, 344
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 328, 417
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 206, 212
TspGWI ACGGA 2 cut(s) 272, 382
TspRI CASTG 2 cut(s) 328, 417
XapI RAATTY 3 cut(s) 231, 263, 344
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.