Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009419

Physical Location & Seq

Genomic Coordinates Reverse (-)

7597239 .. 7598001

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAAGGCGTCTAATTGCAACCCTCAATCGTGGCCTAGTTGGCAAACTCTTCTCCGAGTCCTCTACCAAGCTGGACTCAGGAAAGCCGGTGGTTGCGGGAATGTGTGGACTGGACAAAGCAGGTTACAGTACCCAAGCCAAGCAAGAATCTCATTTTTATGATGGCGCTTTTGTGGATGCGTTCCTGATGAAAATGAAGAACAACAAAGATCTTCTTAACAATAAGAAAATTTGGTCACGCAGATCTACTATTTTGCCGGAATTCGTGGGTACTACAGTCCGTATCTATAATGGAAAAAATCATGTTCGCTGCAAGATCACCGAAGAGAAGGTTGGTCATAAATTTGGAGAGTTTGCAATGACACGGAAACGAAGAGTTCAGGCTAAAACTACCGCGCCAGTAAGACCAGTGAAACCAGGAAAAAAAGCAGGCAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

148

Amino Acids

16.45

Weight (kDa)

10.45

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47320
fragaria_vesca	FvH4_5g23230
malus_domestica	MD02G1217700.v1.1 MD07G1100000.v1.1
prunus_persica	Prupe.2G123500_v2.0.a1 Prupe.2G123500_v2.0.a1
pyrus_communis	pycom07g08220
rosa_chinensis	RchiOBHm_Chr7g0212161
rosa_laevigata	RLG00000002921
rosa_roxburghii	Rroxscaffold_1G00062470 Rroxscaffold_3G00247060
rosa_rugosa	Rorug07G0131600 Rorug07G0131700
rosa_samantha	Rh2CG529000 Rh5AG255000 Rh5AG419100 Rh7AG264600 Rh7BG259100 Rh7CG281100 Rh7DG271000
rosa_wichuraiana	Rw2G045120 Rw7G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	98, 396
AcsI	RAATTY	3 cut(s)	231, 263, 344
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	2 cut(s)	133, 274
AjnI	CCWGG	1 cut(s)	418
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	3 cut(s)	231, 263, 344
AspLEI	GCGC	2 cut(s)	170, 400
AsuHPI	GGTGA	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	420
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	42
BglII	AGATCT	2 cut(s)	211, 245
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	10
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	3 cut(s)	117, 401, 410
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	420
BseGI	GGATG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	3 cut(s)	117, 401, 410
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	89, 260
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	211, 245, 318
BspACI	CCGC	2 cut(s)	98, 396
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	117, 401, 410
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	3 cut(s)	211, 245, 318
BssNI	GRCGYC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	131, 280
Bst6I	CTCTTC	3 cut(s)	56, 321, 370
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 400
BstKTI	GATC	3 cut(s)	214, 248, 321
BstMBI	GATC	3 cut(s)	211, 245, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	211, 245
BstYI	RGATCY	2 cut(s)	211, 245
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	433
CfoI	GCGC	2 cut(s)	170, 400
Cfr10I	RCCGGY	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	132, 273
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	5 cut(s)	36, 73, 88, 140, 386
CviKI_1	RGCY	5 cut(s)	36, 73, 88, 140, 386
CviQI	GTAC	2 cut(s)	132, 273
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	3 cut(s)	213, 247, 320
DpnII	GATC	3 cut(s)	211, 245, 318
Eam1104I	CTCTTC	3 cut(s)	56, 321, 370
EarI	CTCTTC	3 cut(s)	56, 321, 370
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	418
FaeI	CATG	1 cut(s)	308
FaiI	YATR	4 cut(s)	162, 291, 306, 342
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	1 cut(s)	304
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	2 cut(s)	169, 399
GluI	GCNGC	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	2 cut(s)	89, 260
HhaI	GCGC	2 cut(s)	170, 400
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	2 cut(s)	168, 398
HinP1I	GCGC	2 cut(s)	168, 398
HinfI	GANTC	3 cut(s)	59, 77, 149
HpaII	CCGG	2 cut(s)	89, 260
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	81, 187
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	2 cut(s)	131, 280
HpyCH4V	TGCA	3 cut(s)	20, 315, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	79
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	2 cut(s)	168, 398
Kzo9I	GATC	3 cut(s)	211, 245, 318
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	125, 237
MalI	GATC	3 cut(s)	213, 247, 320
MboI	GATC	3 cut(s)	211, 245, 318
MboII	GAAGA	5 cut(s)	43, 206, 211, 338, 387
MflI	RGATCY	2 cut(s)	211, 245
MluCI	AATT	4 cut(s)	15, 231, 263, 344
MlyI	GAGTC	2 cut(s)	68, 71
MnlI	CCTC	2 cut(s)	35, 73
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	2 cut(s)	89, 260
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	3 cut(s)	211, 245, 318
NlaIII	CATG	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	2 cut(s)	67, 71
PpsI	GAGTC	2 cut(s)	67, 71
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	211, 245
RsaI	GTAC	2 cut(s)	133, 274
RsaNI	GTAC	2 cut(s)	132, 273
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	211, 245, 318
SchI	GAGTC	2 cut(s)	68, 71
ScrFI	CCNGG	1 cut(s)	420
SetI	ASST	3 cut(s)	75, 127, 336
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	4 cut(s)	15, 231, 263, 344
SsiI	CCGC	2 cut(s)	98, 396
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	131, 280
TasI	AATT	4 cut(s)	15, 231, 263, 344
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	206, 212
TspGWI	ACGGA	2 cut(s)	272, 382
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	3 cut(s)	231, 263, 344
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.