Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009419

Physical Location & Seq

Genomic Coordinates Forward (+)

10400532 .. 10400861

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0131700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCCCAGGGGTCCTTAACGAGTTGGCCATGGCCCAAAACCCTAGAGCCAAGGGCAATAAGGGCGCGCAATACGAAACTTGAAGACGATGTGGAAAATGTAGAAGAAGTCGGCGATTGTGCAGTAGAAGGTGATGTAGATGTCGAGGCCGAGGTCGACCTCCATGCAGCCTTTTCAGCCGACGATGGGAAAGAAGAAGAAAAGTTGGTCGAGGAAGAGGCCCATGATGCAGATTACAAAGAAGATGTGGTTCCATCGGATCACCGTTTCGAAATTCGGATTCGGGGTCGAAGATCTTGGACCACCATGGCTTTTTCTTGCGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

109

Amino Acids

12.25

Weight (kDa)

4.41

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47320
fragaria_vesca	FvH4_5g23230
malus_domestica	MD02G1217700.v1.1 MD07G1100000.v1.1
prunus_persica	Prupe.2G123500_v2.0.a1 Prupe.2G123500_v2.0.a1
pyrus_communis	pycom07g08220
rosa_chinensis	RchiOBHm_Chr7g0212161
rosa_laevigata	RLG00000002921
rosa_roxburghii	Rroxscaffold_1G00062470 Rroxscaffold_3G00247060
rosa_rugosa	Rorug07G0131600 Rorug07G0131700
rosa_samantha	Rh2CG529000 Rh5AG255000 Rh5AG419100 Rh7AG264600 Rh7BG259100 Rh7CG281100 Rh7DG271000
rosa_wichuraiana	Rw2G045120 Rw7G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	67
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	6
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	5 cut(s)	3, 26, 32, 147, 219
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	67, 69
AspS9I	GGNCC	5 cut(s)	4, 12, 33, 220, 300
AsuHPI	GGTGA	2 cut(s)	143, 254
AsuII	TTCGAA	1 cut(s)	270
AvaII	GGWCC	2 cut(s)	12, 300
BalI	TGGCCA	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	179, 262
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	8
BfaI	CTAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	2 cut(s)	12, 300
BmgT120I	GGNCC	5 cut(s)	4, 12, 33, 220, 300
BmiI	GGNNCC	2 cut(s)	13, 252
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	270
BsaJI	CCNNGG	6 cut(s)	6, 7, 29, 50, 150, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	6 cut(s)	6, 7, 29, 50, 150, 306
BseLI	CCNNNNNNNGG	1 cut(s)	186
BsePI	GCGCGC	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	5 cut(s)	5, 28, 34, 149, 221
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	5 cut(s)	5, 28, 34, 149, 221
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	259, 293
Bsp19I	CCATGG	2 cut(s)	29, 306
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	5 cut(s)	5, 28, 34, 149, 221
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	13, 252
BspPI	GGATC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	270
BssECI	CCNNGG	6 cut(s)	6, 7, 29, 50, 150, 306
BssHII	GCGCGC	1 cut(s)	65
BssMI	GATC	2 cut(s)	259, 293
BssT1I	CCWWGG	3 cut(s)	29, 50, 306
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	67
BstDSI	CCRYGG	2 cut(s)	29, 306
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	67, 69
BstKTI	GATC	2 cut(s)	262, 296
BstMBI	GATC	2 cut(s)	259, 293
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 176, 227
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	5 cut(s)	5, 28, 34, 149, 221
BtgI	CCRYGG	2 cut(s)	29, 306
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	2 cut(s)	67, 69
Cfr13I	GGNCC	5 cut(s)	4, 12, 33, 220, 300
CviAII	CATG	4 cut(s)	30, 164, 224, 307
CviJI	RGCY	9 cut(s)	5, 28, 34, 49, 149, 170, 179, 221, 311
CviKI_1	RGCY	9 cut(s)	5, 28, 34, 49, 149, 170, 179, 221, 311
DpnI	GATC	2 cut(s)	261, 295
DpnII	GATC	2 cut(s)	259, 293
EaeI	YGGCCR	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	3 cut(s)	29, 50, 306
Eco47I	GGWCC	2 cut(s)	12, 300
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	3 cut(s)	29, 50, 306
ErhI	CCWWGG	3 cut(s)	29, 50, 306
FaeI	CATG	4 cut(s)	33, 167, 227, 310
FaiI	YATR	4 cut(s)	31, 165, 225, 308
FatI	CATG	4 cut(s)	29, 163, 223, 306
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	66, 68
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	5, 28, 34, 149, 221
HhaI	GCGC	2 cut(s)	67, 69
Hin1II	CATG	4 cut(s)	33, 167, 227, 310
Hin6I	GCGC	2 cut(s)	65, 67
HinP1I	GCGC	2 cut(s)	65, 67
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	2 cut(s)	143, 254
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	259, 279
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	122, 167, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 176, 227
Hsp92II	CATG	4 cut(s)	33, 167, 227, 310
HspAI	GCGC	2 cut(s)	65, 67
Kzo9I	GATC	2 cut(s)	259, 293
LpnPI	CCDG	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	44
MalI	GATC	2 cut(s)	261, 295
MboI	GATC	2 cut(s)	259, 293
MboII	GAAGA	7 cut(s)	95, 116, 206, 209, 227, 254, 303
MflI	RGATCY	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	28
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	28
MnlI	CCTC	6 cut(s)	139, 145, 170, 205, 211, 317
Mox20I	TGGCCA	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	28
MseI	TTAA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	62, 176, 227
NcoI	CCATGG	2 cut(s)	29, 306
NdeII	GATC	2 cut(s)	259, 293
NlaIII	CATG	4 cut(s)	33, 167, 227, 310
NlaIV	GGNNCC	2 cut(s)	13, 252
NmeAIII	GCCGAG	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	7
PauI	GCGCGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	13, 252
PspPI	GGNCC	5 cut(s)	4, 12, 33, 220, 300
PspPPI	RGGWCCY	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	293
PteI	GCGCGC	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	259, 293
Sau96I	GGNCC	5 cut(s)	4, 12, 33, 220, 300
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	4 cut(s)	133, 156, 162, 328
SfaNI	GCATC	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	2 cut(s)	12, 300
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	3 cut(s)	29, 50, 306
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	5 cut(s)	144, 156, 210, 270, 289
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseI	GCWGC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	12, 300
XapI	RAATTY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.