Rh5AG419100

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009419
Physical Location & Seq
Reverse (-)
72287145 .. 72304692
17548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG419100.1

Sequence Viewer

Length: 933 bp
ATGTTCCGAATGCTCTCCCTTGTGCAATCAGAAGTACCTTGTTGTGATCATGATGGTGTTTCACCACACTTGGATGTAGCTGTAAATACAAGATGCCGGGCTAGGACCTGCTTGCATCTCAATCATCTTTACCGCTGCACCAGATTCAACACCACTGCCACCATAGATCATCTTTGTGTCATCTTCATCACAGCAAATACATTAATCCCTAATATAATCCAGTTCTGCACCACAACCTTGCAAAGCCCGGGCGAGATCAACATGATACCGCCGATGTTCAACTGCGATCAGAGTTGCAGTCATTTCGGGAAGTCTCACCTTTCAGAAGCACACCTCAAGGAAGAAGACATGGCAAAGCGTCTGATTTCAATCTTCAGCCGTGGTTGGGCTCAAAAACTCCTCCCAACATCCTCCACTAAGCTGAACTCAGGAAAGGCTGTTACTGTGGGACTGGGTGGACAGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGAAAAAGGAAACCTTGTGATTTTCACTGGATGGATTTTGTGCACATCTCATTTTTATGATGGTGCCTTTGTGGATGCATTCCTGATGAAAATGAAAAACAACAAAGAGCTTCTTATGAATAAGAAAATCTGGTCCTGGAGATCTACTATTTTCAGGAGAGTTGGAAAACGAAAGATTGGATTTATTGAAGATTTTGAAAGCATGTTTCTGAAATCTTGGACAGAAGACCATTTGAGCATACAGAATTGGATCGAAGACTTATTTTGGAAACAACTTGATATAAATTACCTTGGCATGCCTAATGCAATGGTACTTATTGCAGTGAAGGTTCTCCACTTGTTTGCTTGCAGTGAAGGCAGAGTGTTGATGATAAAGTTCAGAGAAGAAGACATAAGACATATCATTATGCTCTGTGTCAACCAGTTGAATGAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

310

Amino Acids

35.5

Weight (kDa)

8.69

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 116, 461
AccB1I GGYRCC 1 cut(s) 557
AciI CCGC 2 cut(s) 133, 269
AclWI GGATC 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 358
AfaI GTAC 4 cut(s) 36, 466, 481, 807
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 6 cut(s) 148, 280, 369, 683, 692, 922
AjnI CCWGG 1 cut(s) 629
AluBI AGCT 4 cut(s) 80, 421, 604, 930
AluI AGCT 4 cut(s) 80, 421, 604, 930
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 318
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 535
ApeKI GCWGC 1 cut(s) 135
AseI ATTAAT 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 105, 627
AsuC2I CCSGG 3 cut(s) 98, 248, 249
AsuHPI GGTGA 2 cut(s) 54, 308
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 2 cut(s) 105, 627
BaeGI GKGCMC 1 cut(s) 539
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 4 cut(s) 351, 726, 756, 888
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 1 cut(s) 122
BccI CCATC 3 cut(s) 47, 519, 548
BceAI ACGGC 1 cut(s) 363
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 631
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 3 cut(s) 98, 248, 249
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 2 cut(s) 102, 931
BfuAI ACCTGC 2 cut(s) 116, 461
BglII AGATCT 1 cut(s) 635
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 4 cut(s) 98, 248, 249, 631
Bme18I GGWCC 2 cut(s) 105, 627
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 105, 627
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 4 cut(s) 98, 248, 249, 631
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 3 cut(s) 83, 124, 559
BmuI ACTGGG 1 cut(s) 461
BpiI GAAGAC 4 cut(s) 351, 726, 756, 888
BpmI CTGGAG 1 cut(s) 652
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 3 cut(s) 98, 248, 249
BsaBI GATNNNNATC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 247, 379, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 4 cut(s) 220, 456, 526, 916
Bse3DI GCAATG 1 cut(s) 807
Bse8I GATNNNNATC 1 cut(s) 368
BseBI CCWGG 1 cut(s) 631
BseDI CCNNGG 3 cut(s) 247, 379, 784
BseGI GGATG 4 cut(s) 79, 407, 530, 574
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 4 cut(s) 220, 456, 526, 916
BseRI GAGGAG 1 cut(s) 389
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 122
BsgI GTGCAG 2 cut(s) 121, 211
BshNI GGYRCC 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 2 cut(s) 97, 248
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 462
BsmI GAATGC 2 cut(s) 15, 572
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 391, 539
Bsp143I GATC 6 cut(s) 46, 166, 255, 286, 635, 744
BspACI CCGC 2 cut(s) 133, 269
BspCNI CTCAG 1 cut(s) 440
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 559
BspMI ACCTGC 2 cut(s) 116, 461
BspPI GGATC 1 cut(s) 752
BspT107I GGYRCC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 807
BsrI ACTGG 4 cut(s) 220, 456, 526, 916
BssECI CCNNGG 3 cut(s) 247, 379, 784
BssMI GATC 6 cut(s) 46, 166, 255, 286, 635, 744
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 2 cut(s) 445, 479
BstC8I GCNNGC 3 cut(s) 113, 791, 841
BstDEI CTNAG 2 cut(s) 417, 427
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 4 cut(s) 79, 407, 530, 574
BstKTI GATC 6 cut(s) 49, 169, 258, 289, 638, 747
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 6 cut(s) 46, 166, 255, 286, 635, 744
BstMWI GCNNNNNNNGC 1 cut(s) 849
BstNI CCWGG 1 cut(s) 631
BstNSI RCATGY 2 cut(s) 700, 793
BstSCI CCNGG 4 cut(s) 96, 246, 247, 629
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 4 cut(s) 351, 726, 756, 888
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 4 cut(s) 79, 407, 530, 574
BtsI GCAGTG 3 cut(s) 153, 822, 850
BtsIMutI CAGTG 4 cut(s) 153, 519, 822, 850
BveI ACCTGC 2 cut(s) 116, 461
Cac8I GCNNGC 3 cut(s) 113, 791, 841
CciI TCATGA 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 105, 627
Cfr9I CCCGGG 1 cut(s) 247
CseI GACGC 1 cut(s) 347
Csp6I GTAC 4 cut(s) 35, 465, 480, 806
CviAII CATG 5 cut(s) 50, 262, 349, 697, 790
CviJI RGCY 9 cut(s) 80, 101, 246, 378, 389, 421, 437, 604, 930
CviKI_1 RGCY 9 cut(s) 80, 101, 246, 378, 389, 421, 437, 604, 930
CviQI GTAC 4 cut(s) 35, 465, 480, 806
DdeI CTNAG 2 cut(s) 417, 427
DpnI GATC 6 cut(s) 48, 168, 257, 288, 637, 746
DpnII GATC 6 cut(s) 46, 166, 255, 286, 635, 744
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 105, 627
Eco57I CTGAAG 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 784
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 5 cut(s) 53, 265, 352, 700, 793
FalI AAGNNNNNCTT 4 cut(s) 492, 524, 591, 623
FaqI GGGAC 1 cut(s) 462
FatI CATG 5 cut(s) 49, 261, 348, 696, 789
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 4 cut(s) 86, 394, 537, 581
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 2 cut(s) 102, 931
GluI GCNGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 652
HapII CCGG 2 cut(s) 97, 248
HgaI GACGC 1 cut(s) 347
Hin1II CATG 5 cut(s) 53, 265, 352, 700, 793
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HinfI GANTC 1 cut(s) 144
HpaII CCGG 2 cut(s) 97, 248
HphI GGTGA 2 cut(s) 54, 308
Hpy166II GTNNAC 3 cut(s) 458, 537, 913
Hpy188I TCNGA 7 cut(s) 8, 31, 291, 325, 363, 705, 875
Hpy188III TCNNGA 5 cut(s) 50, 307, 429, 577, 649
Hpy8I GTNNAC 3 cut(s) 458, 537, 913
HpyAV CCTTC 2 cut(s) 814, 842
HpyCH4III ACNGT 2 cut(s) 445, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 849
HpyF3I CTNAG 2 cut(s) 417, 427
Hsp92II CATG 5 cut(s) 53, 265, 352, 700, 793
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 6 cut(s) 46, 166, 255, 286, 635, 744
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 3 cut(s) 83, 124, 559
MaeI CTAG 2 cut(s) 102, 931
MaeIII GTNAC 2 cut(s) 439, 473
MalI GATC 6 cut(s) 48, 168, 257, 288, 637, 746
MboI GATC 6 cut(s) 46, 166, 255, 286, 635, 744
MboII GAAGA 9 cut(s) 175, 353, 356, 364, 695, 731, 761, 890, 893
MflI RGATCY 1 cut(s) 635
MhlI GDGCHC 2 cut(s) 391, 539
MluCI AATT 2 cut(s) 739, 778
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 3 cut(s) 344, 410, 421
Mph1103I ATGCAT 1 cut(s) 574
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 4 cut(s) 54, 72, 174, 549
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 2 cut(s) 97, 248
MspR9I CCNGG 4 cut(s) 98, 248, 249, 631
Mva1269I GAATGC 2 cut(s) 15, 572
MvaI CCWGG 1 cut(s) 631
MwoI GCNNNNNNNGC 1 cut(s) 849
NciI CCSGG 3 cut(s) 98, 248, 249
NdeII GATC 6 cut(s) 46, 166, 255, 286, 635, 744
NlaIII CATG 5 cut(s) 53, 265, 352, 700, 793
NlaIV GGNNCC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 2 cut(s) 700, 793
PaeI GCATGC 1 cut(s) 793
PagI TCATGA 1 cut(s) 49
PctI GAATGC 2 cut(s) 15, 572
PfeI GAWTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 629
PkrI GCNGC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 2 cut(s) 105, 627
PspPPI RGGWCCY 1 cut(s) 105
PsuI RGATCY 1 cut(s) 635
RsaI GTAC 4 cut(s) 36, 466, 481, 807
RsaNI GTAC 4 cut(s) 35, 465, 480, 806
RseI CAYNNNNRTG 4 cut(s) 54, 72, 174, 549
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 6 cut(s) 46, 166, 255, 286, 635, 744
Sau96I GGNCC 2 cut(s) 105, 627
ScrFI CCNGG 4 cut(s) 98, 248, 249, 631
SduI GDGCHC 2 cut(s) 391, 539
SfaNI GCATC 3 cut(s) 83, 124, 559
SinI GGWCC 2 cut(s) 105, 627
SmaI CCCGGG 1 cut(s) 249
SmiMI CAYNNNNRTG 4 cut(s) 54, 72, 174, 549
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SphI GCATGC 1 cut(s) 793
SrfI GCCCGGGC 1 cut(s) 249
Sse9I AATT 2 cut(s) 739, 778
SsiI CCGC 2 cut(s) 133, 269
SspMI CTAG 2 cut(s) 102, 931
StyD4I CCNGG 4 cut(s) 96, 246, 247, 629
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 2 cut(s) 445, 479
TaqI TCGA 1 cut(s) 747
TasI AATT 2 cut(s) 739, 778
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 4 cut(s) 160, 526, 822, 850
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 4 cut(s) 175, 596, 602, 626
TspMI CCCGGG 1 cut(s) 247
TspRI CASTG 4 cut(s) 160, 526, 822, 850
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 105, 627
VspI ATTAAT 1 cut(s) 203
XceI RCATGY 2 cut(s) 700, 793
XmaI CCCGGG 1 cut(s) 247
XspI CTAG 2 cut(s) 102, 931
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.