Rw2G045120

Ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009419
Physical Location & Seq
Forward (+)
72072719 .. 72074417
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045120.1

Sequence Viewer

Length: 402 bp
ATGTATTTCTCATGGTGGAATTTTTTTTATTTTAATTGTCATGAAACAGAGGAAGAAGACATGGCAAAGCGTTTGATTTCAATCTTCAGCCGTGGTTGGGCTCAAAAACTCCTCCCAACATCCTCCACTAAGCTGAACTCAGGAAAGGCTGTTACTGTGGGACTGGGTGGACAGAGTACAGCAGGTTACAGTACCCAAGTCAAGCAAGAAAAAGGAAACCTTGTGATTTTCACTGGATGGATTTTGTGCACATCTCATTTTTATGATGGTGCCTTTGTGGATGCATTCCTGATGAAAATGAAAAACAACAAAGAGCTTCTTATGAATAAGAAAATCTGGTCCTGGAGATCTACTATTTTCAAGAGAGTTGGAAAACGAAAGGTTGCTGCTCCAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S19

Protein Analysis

133

Amino Acids

15.34

Weight (kDa)

9.73

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 70
AfaI GTAC 2 cut(s) 178, 193
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 81, 361, 398
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 2 cut(s) 133, 316
AluI AGCT 2 cut(s) 133, 316
Alw21I GWGCWC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 339
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 373
BccI CCATC 2 cut(s) 231, 260
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 343
BfuAI ACCTGC 1 cut(s) 173
BglII AGATCT 1 cut(s) 347
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 2 cut(s) 364, 375
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 3 cut(s) 168, 238, 392
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 3 cut(s) 119, 242, 286
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 3 cut(s) 168, 238, 392
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 373
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 103, 251
Bsp143I GATC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 269
BsrI ACTGG 3 cut(s) 168, 238, 392
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 157, 191
BstDEI CTNAG 2 cut(s) 129, 139
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 3 cut(s) 119, 242, 286
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 3 cut(s) 119, 242, 286
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 173
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 339
Csp6I GTAC 2 cut(s) 177, 192
CviAII CATG 3 cut(s) 12, 41, 61
CviJI RGCY 5 cut(s) 90, 101, 133, 149, 316
CviKI_1 RGCY 5 cut(s) 90, 101, 133, 149, 316
CviQI GTAC 2 cut(s) 177, 192
DdeI CTNAG 2 cut(s) 129, 139
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 341
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 3 cut(s) 15, 44, 64
FaiI YATR 5 cut(s) 13, 42, 62, 264, 323
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 303, 335
FaqI GGGAC 1 cut(s) 174
FatI CATG 3 cut(s) 11, 40, 60
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 3 cut(s) 106, 249, 293
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 364, 375
Hin1II CATG 3 cut(s) 15, 44, 64
Hpy166II GTNNAC 2 cut(s) 170, 249
Hpy188III TCNNGA 4 cut(s) 41, 141, 289, 361
Hpy8I GTNNAC 2 cut(s) 170, 249
HpyCH4III ACNGT 2 cut(s) 157, 191
HpyCH4V TGCA 2 cut(s) 249, 284
HpyF3I CTNAG 2 cut(s) 129, 139
Hsp92II CATG 3 cut(s) 15, 44, 64
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 8 cut(s) 126, 149, 168, 219, 302, 322, 328, 355
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 151, 185
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 3 cut(s) 65, 68, 76
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 103, 251
MluCI AATT 2 cut(s) 19, 34
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 3 cut(s) 43, 122, 133
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 343
NdeII GATC 1 cut(s) 347
NlaIII CATG 3 cut(s) 15, 44, 64
NlaIV GGNNCC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 286
PagI TCATGA 1 cut(s) 40
PctI GAATGC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 341
PkrI GCNGC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 2 cut(s) 178, 193
RsaNI GTAC 2 cut(s) 177, 192
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 2 cut(s) 103, 251
SetI ASST 5 cut(s) 135, 187, 222, 318, 384
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 2 cut(s) 19, 34
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 157, 191
TasI AATT 2 cut(s) 19, 34
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 4 cut(s) 57, 308, 314, 338
TspRI CASTG 1 cut(s) 238
VneI GTGCAC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.