AT5G50840

Has 48881 Blast hits to 26998 proteins in 1148 species Archae - 400

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008794
Physical Location & Seq
Forward (+)
20685772 .. 20688942
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50840.2

Sequence Viewer

Length: 1215 bp
ATGGAGTCACCGCACTCGAATTTGCTCCCTGAAGTCGATTCTTTACCCGATGGATTCGTCGACGGCGCAACAGAGCCGCCTCTCAATTCTCCCAAGACCCAGGAAGAAACAACAAACCATGAAACTGTTGCGATCGAGAAAACAGAGAAGCCAAGAACTTTTCCGGTTCCGTTGTGTGAAACTGATGGTAATGAAGATGACGAAGTAGCTGACCTAATTCAAGAATCAATCAAGCTTGAGTTAGAGTTCGAGCAGAAAGAAAAAGAAGCTTCTCCTCCTATTTCTCAAACATTGTCAGAAGGGTCAACTCAAAATTCAACCTTGTCTAAGGAAATGGATTCACTCAAACCCAAAAAACAAGAGGTGGTTGAGAGCAAGCGTAAGGGTTCAAAGAATATGTTCAAATCAGAGAAAGAGTTTTTGGAATTTATGCTCAAGTATCAGCAAGTCCTTTCTGAAAGAGATTCTGCTATTACTGTTCGTGACAAGCTTGAATCACTTTGTAGAGAGTTACAACGTCAGAACAAAATGTTAATGGAAGAATGCAAGAGGGTTTCAACTGAGGGACAGACTTTAAGATCGGATTTATCGACAAAGTTCCAGGATGCTATAATGGATGTGAGCATTAAGTTGGACGAGCAAAAGAATGAAAGCCTCACGCAACTCAAAGAAAATGAGATGTTAAGGACGAAGTTGAAGCACCTGGCTGATCAATTTATGCTTTCAGAACAACAACATGAGCAAAGGTTGAAGCAGAAAACACTTGAGCTACAGATCTCTGCTTTAAAAATTAAACAGCACGAGGAGAAACTCATCCATGAACAATCTCAGATGAAAGTTTACGCAGATCAAGTTTCTCAGCTTTTGTCTACTGAGAAAAATTTGCGGTTGCAGCTGACTTCTGATGGAGATAAATTCCAGCAGTTCCAGGACGCGTTGGTTAAGAGCAATGAGGTGTTTGAAACATTCAAACAAGAAATCGATAAGATGTCAAAAGCAATCAAAGAACTCAGAAAAGAAAACGCATTCTTGAAAAACAAAACTGAGAAGTCGGATATCACTCTCATAGAACTCGTCGAAGAGCGTGAAAGATTGAAGAAACTGTTGGAGAAGACAAAGAAACAGAAAGACAAGCTTGAATCACTTTGCAGATCCCTTCAAGCTGAAAGAAAACAGAAAGAAACTAACAGTACTGATTCTGCTGTTCAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

404

Amino Acids

46.8

Weight (kDa)

5.42

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 96 - 390 2e-78 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 869
AccII CGCG 1 cut(s) 935
AciI CCGC 3 cut(s) 11, 77, 886
AclWI GGATC 1 cut(s) 1146
AcsI RAATTY 5 cut(s) 19, 313, 425, 880, 914
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 1192
AflIII ACRYGT 1 cut(s) 933
AjnI CCWGG 4 cut(s) 99, 600, 702, 927
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 1088, 1120
AluBI AGCT 9 cut(s) 209, 235, 269, 490, 769, 862, 895, 1135, 1163
AluI AGCT 9 cut(s) 209, 235, 269, 490, 769, 862, 895, 1135, 1163
AlwI GGATC 1 cut(s) 1146
ApeKI GCWGC 1 cut(s) 892
ApoI RAATTY 5 cut(s) 19, 313, 425, 880, 914
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 68
BauI CACGAG 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 1118
BbvI GCAGC 1 cut(s) 904
BccI CCATC 3 cut(s) 44, 179, 899
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 4 cut(s) 101, 602, 704, 929
BclI TGATCA 1 cut(s) 709
BfmI CTRYAG 1 cut(s) 770
BglII AGATCT 1 cut(s) 774
BisI GCNGC 2 cut(s) 77, 893
BlsI GCNGC 2 cut(s) 78, 894
BmcAI AGTACT 1 cut(s) 1192
Bme1390I CCNGG 4 cut(s) 101, 602, 704, 929
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 4 cut(s) 101, 602, 704, 929
BmsI GCATC 1 cut(s) 595
BpiI GAAGAC 1 cut(s) 1118
BpuEI CTTGAG 3 cut(s) 257, 419, 785
Bsa29I ATCGAT 1 cut(s) 981
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 955
BseBI CCWGG 4 cut(s) 101, 602, 704, 929
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 610, 622, 813
BseMI GCAATG 1 cut(s) 955
BseMII CTCAG 6 cut(s) 552, 842, 864, 872, 1024, 1035
BseRI GAGGAG 2 cut(s) 264, 818
BseXI GCAGC 1 cut(s) 904
Bsh1236I CGCG 1 cut(s) 935
Bsh1285I CGRYCG 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 981
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 579
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 2 cut(s) 548, 1025
Bsp143I GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
BspACI CCGC 3 cut(s) 11, 77, 886
BspCNI CTCAG 6 cut(s) 553, 841, 865, 871, 1023, 1036
BspDI ATCGAT 1 cut(s) 981
BspFNI CGCG 1 cut(s) 935
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 1146
BspQI GCTCTTC 1 cut(s) 1074
BsrDI GCAATG 1 cut(s) 955
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
BssSI CACGAG 1 cut(s) 800
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 4 cut(s) 101, 602, 704, 929
Bst4CI ACNGT 4 cut(s) 127, 478, 1104, 1190
Bst6I CTCTTC 1 cut(s) 1074
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 7 cut(s) 327, 561, 828, 858, 873, 1010, 1044
BstF5I GGATG 3 cut(s) 610, 622, 813
BstFNI CGCG 1 cut(s) 935
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 6 cut(s) 135, 581, 712, 777, 850, 1154
BstMBI GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 892
BstNI CCWGG 4 cut(s) 101, 602, 704, 929
BstSCI CCNGG 4 cut(s) 99, 600, 702, 927
BstSFI CTRYAG 1 cut(s) 770
BstUI CGCG 1 cut(s) 935
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 1 cut(s) 1118
BstX2I RGATCY 2 cut(s) 774, 1151
BstYI RGATCY 2 cut(s) 774, 1151
Bsu15I ATCGAT 1 cut(s) 981
BsuTUI ATCGAT 1 cut(s) 981
BtsCI GGATG 3 cut(s) 610, 622, 813
Cac8I GCNNGC 1 cut(s) 377
CfoI GCGC 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 981
CseI GACGC 1 cut(s) 941
Csp6I GTAC 1 cut(s) 1191
CviAII CATG 4 cut(s) 119, 737, 818, 1212
CviQI GTAC 1 cut(s) 1191
DdeI CTNAG 7 cut(s) 327, 561, 828, 858, 873, 1010, 1044
DpnI GATC 6 cut(s) 134, 580, 711, 776, 849, 1153
DpnII GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
DraI TTTAAA 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 1074
Eco32I GATATC 1 cut(s) 1057
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 4 cut(s) 99, 600, 702, 927
EcoRV GATATC 1 cut(s) 1057
FaeI CATG 4 cut(s) 122, 740, 821, 1215
FaiI YATR 9 cut(s) 120, 398, 431, 611, 719, 738, 819, 1067, 1213
FalI AAGNNNNNCTT 2 cut(s) 1119, 1151
FaqI GGGAC 1 cut(s) 579
FatI CATG 4 cut(s) 118, 736, 817, 1211
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 2 cut(s) 60, 869
Fnu4HI GCNGC 2 cut(s) 77, 893
FokI GGATG 3 cut(s) 617, 629, 800
Fsp4HI GCNGC 2 cut(s) 77, 893
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 77, 893
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 941
HhaI GCGC 1 cut(s) 68
Hin1II CATG 4 cut(s) 122, 740, 821, 1215
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 2 cut(s) 61, 306
HindII GTYRAC 2 cut(s) 61, 306
HindIII AAGCTT 4 cut(s) 233, 267, 488, 1133
HinfI GANTC 9 cut(s) 5, 38, 54, 224, 338, 464, 494, 1139, 1196
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 4 cut(s) 61, 306, 841, 870
Hpy188III TCNNGA 4 cut(s) 136, 221, 482, 1030
Hpy8I GTNNAC 4 cut(s) 61, 306, 841, 870
Hpy99I CGWCG 3 cut(s) 62, 65, 1079
HpyAV CCTTC 2 cut(s) 293, 1166
HpyCH4III ACNGT 4 cut(s) 127, 478, 1104, 1190
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 3 cut(s) 546, 892, 1149
HpyF10VI GCNNNNNNNGC 1 cut(s) 892
HpyF3I CTNAG 7 cut(s) 327, 561, 828, 858, 873, 1010, 1044
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 4 cut(s) 122, 740, 821, 1215
HspAI GCGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 904
LweI GCATC 1 cut(s) 595
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 3 cut(s) 6, 482, 510
MalI GATC 6 cut(s) 134, 580, 711, 776, 849, 1153
MboI GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
MboII GAAGA 6 cut(s) 116, 206, 551, 1091, 1108, 1123
MflI RGATCY 2 cut(s) 774, 1151
MluCI AATT 9 cut(s) 19, 85, 216, 313, 425, 713, 789, 880, 914
MluI ACGCGT 1 cut(s) 933
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 3 cut(s) 612, 1032, 1086
MnlI CCTC 8 cut(s) 90, 285, 355, 543, 556, 665, 796, 946
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 7 cut(s) 533, 575, 627, 683, 785, 792, 942
MspA1I CMGCKG 1 cut(s) 895
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 4 cut(s) 101, 602, 704, 929
Mva1269I GAATGC 2 cut(s) 548, 1025
MvaI CCWGG 4 cut(s) 101, 602, 704, 929
MvnI CGCG 1 cut(s) 935
MwoI GCNNNNNNNGC 1 cut(s) 892
NdeII GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
NlaIII CATG 4 cut(s) 122, 740, 821, 1215
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 6, 482
PciSI GCTCTTC 1 cut(s) 1074
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PctI GAATGC 2 cut(s) 548, 1025
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 8 cut(s) 38, 54, 224, 338, 464, 494, 1139, 1196
PfoI TCCNGGA 2 cut(s) 600, 927
PkrI GCNGC 2 cut(s) 78, 894
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 4 cut(s) 99, 600, 702, 927
PspGI CCWGG 4 cut(s) 99, 600, 702, 927
PspN4I GGNNCC 1 cut(s) 168
PsuI RGATCY 2 cut(s) 774, 1151
PvuI CGATCG 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 895
RsaI GTAC 1 cut(s) 1192
RsaNI GTAC 1 cut(s) 1191
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 7 cut(s) 533, 575, 627, 683, 785, 792, 942
SatI GCNGC 2 cut(s) 77, 893
Sau3AI GATC 6 cut(s) 132, 578, 709, 774, 847, 1151
ScaI AGTACT 1 cut(s) 1192
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 101, 602, 704, 929
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 770
SgrDI CGTCGACG 1 cut(s) 59
SmlI CTYRAG 3 cut(s) 236, 434, 764
SmoI CTYRAG 3 cut(s) 236, 434, 764
Sse9I AATT 9 cut(s) 19, 85, 216, 313, 425, 713, 789, 880, 914
SsiI CCGC 3 cut(s) 11, 77, 886
StyD4I CCNGG 4 cut(s) 99, 600, 702, 927
TaaI ACNGT 4 cut(s) 127, 478, 1104, 1190
TaiI ACGT 1 cut(s) 520
TaqI TCGA 8 cut(s) 17, 36, 60, 135, 249, 590, 981, 1077
TasI AATT 9 cut(s) 19, 85, 216, 313, 425, 713, 789, 880, 914
TatI WGTACW 1 cut(s) 1190
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 8 cut(s) 38, 54, 224, 338, 464, 494, 1139, 1196
Tru1I TTAA 7 cut(s) 533, 575, 627, 683, 785, 792, 942
Tru9I TTAA 7 cut(s) 533, 575, 627, 683, 785, 792, 942
TseFI GTSAC 2 cut(s) 6, 482
TseI GCWGC 1 cut(s) 892
Tsp45I GTSAC 2 cut(s) 6, 482
TspDTI ATGAA 5 cut(s) 135, 207, 663, 834, 848
TspGWI ACGGA 1 cut(s) 159
XapI RAATTY 5 cut(s) 19, 313, 425, 880, 914
XmiI GTMKAC 2 cut(s) 60, 869
XmnI GAANNNNTTC 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.