Rh1BG281800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008794
Physical Location & Seq
Reverse (-)
41847786 .. 41853389
5604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG281800.1

Sequence Viewer

Length: 1194 bp
ATGGAGAACCCAGAAGCAAATCAGCTTCCTGAAGTGGATTCACTGCCAGATGGATTTGTTGAGAGCTCGTCAGAGCCACTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGAGGATGATAATGCCTCAGAGATGGATCGTTCGAAGGAGCGTGTCGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCAGGATAAGGGAGAGAAGACACCAAAGCTGAGAACCTTTCCTGTTCCATTATCGGAAACTGATAATTTTGATGCTTCAGTTGAGTCAGTTGAAGTTCCGAAGAAGGCTTCTACGGAGCAGACAGCAGAAGGTTCAGTAGTTGTGCCTGGGTCGGCTGATTCTGCATCTGAGGCTGCAATTCAGGCATCTGGTTGCAGTGAAGTAAAGGAACAAGTTGAAGAAAAATGTGAAAGTTCAGAGAGATCAATTGAAGTAGGCTTGGATGCACCAGCAACCAATCTAAAGGAAATATCTGCTTCGGAGAGTGTTGAAAAAAACAAAAAACCAGATACAACTGAAGCCAAACGGAAAAATCCAAAGCGGACCTTTAAATCAGAGAAGGAGTTTATAGAGTTCACTTTGAAGTATCAACAAGTTCTTGCAGAGAGAGATGGAGCCATTGCTGTTCGAGATAAGCTTGAGTCGTTGTGTAGAGAGTTACAACGCCAAAACAAAATGCTAATGGATGAATGTAGACGGGTGTCAACAGAGGGCCAAAACTTGAGATTAGAGTTATCAACCAAGTTCCAAGATGCAATAAAGGATGTGAGCAAAAAGCTAGATGAGCAGAAGGATGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGTACCAAACTACAGCAGCTCACCCATCAGTATGCTCATTCTGAACAGCAATATGAAACGAAGTTGAAGCAAAAATCATTGGAGCTTCAAATTGCTGATTTGAAGATTAGGCAGCATGAAGAGAAATTAATCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAATTACTATCGACTGAAAAGAATTTGCGGTTGCAGTTGACGGCTGATGGGGAAAAATTCCAACAATTCCCGGTAAACTTCTGTTTTGTGTGTTGCTTTAAACCATTAGTTGGATCTTACTCACCAGAATCTGGTGAGTGTTTGCTTCGTAGGGACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

397

Amino Acids

44.87

Weight (kDa)

4.85

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 174 - 367 1.7e-43 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1142, 1163
AccI GTMKAC 1 cut(s) 721
AciI CCGC 2 cut(s) 568, 1060
AclWI GGATC 2 cut(s) 162, 1153
AcsI RAATTY 2 cut(s) 1054, 1088
AcuI CTGAAG 3 cut(s) 51, 267, 564
AfaI GTAC 1 cut(s) 862
AfiI CCNNNNNNNGG 3 cut(s) 214, 1142, 1163
AgsI TTSAA 9 cut(s) 104, 299, 425, 458, 518, 610, 925, 947, 961
AjnI CCWGG 3 cut(s) 207, 352, 990
AluBI AGCT 8 cut(s) 25, 66, 235, 664, 805, 838, 877, 943
AluI AGCT 8 cut(s) 25, 66, 235, 664, 805, 838, 877, 943
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 2 cut(s) 162, 1153
AlwNI CAGNNNCTG 1 cut(s) 1163
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 3 cut(s) 380, 874, 970
ApoI RAATTY 2 cut(s) 1054, 1088
AseI ATTAAT 1 cut(s) 986
AspS9I GGNCC 2 cut(s) 570, 739
AsuC2I CCSGG 2 cut(s) 120, 1103
AsuHPI GGTGA 3 cut(s) 871, 1146, 1178
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 68
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 367, 886, 982
BccI CCATC 5 cut(s) 44, 145, 632, 891, 1073
BceAI ACGGC 1 cut(s) 1089
BciT130I CCWGG 3 cut(s) 209, 354, 992
BcnI CCSGG 2 cut(s) 120, 1103
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 1 cut(s) 869
BisI GCNGC 3 cut(s) 381, 875, 971
BlsI GCNGC 3 cut(s) 382, 876, 972
Bme1390I CCNGG 5 cut(s) 120, 209, 354, 992, 1103
Bme18I GGWCC 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 570, 739
BmiI GGNNCC 2 cut(s) 84, 643
BmrFI CCNGG 5 cut(s) 120, 209, 354, 992, 1103
BmsI GCATC 5 cut(s) 268, 380, 401, 460, 769
BoxI GACNNNNGTC 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 2 cut(s) 686, 769
BpuMI CCSGG 2 cut(s) 120, 1103
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 1142, 1163
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 3 cut(s) 209, 354, 992
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 5 cut(s) 139, 475, 718, 796, 826
BseLI CCNNNNNNNGG 3 cut(s) 214, 1142, 1163
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 4 cut(s) 159, 227, 366, 848
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 367, 886, 982
BshFI GGCC 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 2 cut(s) 119, 1103
BslFI GGGAC 1 cut(s) 985
BslI CCNNNNNNNGG 3 cut(s) 214, 1142, 1163
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 1 cut(s) 741
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 154, 449, 1145
BspACI CCGC 2 cut(s) 568, 1060
BspANI GGCC 1 cut(s) 741
BspCNI CTCAG 4 cut(s) 158, 228, 367, 847
BspLI GGNNCC 2 cut(s) 84, 643
BspPI GGATC 2 cut(s) 162, 1153
BspT104I TTCGAA 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 154, 449, 1145
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 209, 354, 992
Bst4CI ACNGT 1 cut(s) 999
Bst6I CTCTTC 1 cut(s) 972
BstBI TTCGAA 1 cut(s) 161
BstDEI CTNAG 4 cut(s) 145, 236, 375, 834
BstF5I GGATG 5 cut(s) 139, 475, 718, 796, 826
BstKTI GATC 3 cut(s) 157, 452, 1148
BstMBI GATC 3 cut(s) 154, 449, 1145
BstMWI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 811
BstNI CCWGG 3 cut(s) 209, 354, 992
BstPAI GACNNNNGTC 1 cut(s) 727
BstSCI CCNGG 5 cut(s) 118, 207, 352, 990, 1101
BstSFI CTRYAG 1 cut(s) 869
BstV1I GCAGC 3 cut(s) 367, 886, 982
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 1145
BstYI RGATCY 1 cut(s) 1145
BsuRI GGCC 1 cut(s) 741
BtsCI GGATG 5 cut(s) 139, 475, 718, 796, 826
BtsI GCAGTG 2 cut(s) 41, 409
BtsIMutI CAGTG 3 cut(s) 41, 77, 409
CaiI CAGNNNCTG 1 cut(s) 1163
Cfr13I GGNCC 2 cut(s) 570, 739
Csp6I GTAC 1 cut(s) 861
CviAII CATG 1 cut(s) 974
CviQI GTAC 1 cut(s) 861
DdeI CTNAG 4 cut(s) 145, 236, 375, 834
DpnI GATC 3 cut(s) 156, 451, 1147
DpnII GATC 3 cut(s) 154, 449, 1145
DraI TTTAAA 2 cut(s) 577, 1132
Eam1104I CTCTTC 1 cut(s) 972
EarI CTCTTC 1 cut(s) 972
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 3 cut(s) 51, 267, 564
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 3 cut(s) 207, 352, 990
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 1 cut(s) 977
FaiI YATR 6 cut(s) 596, 891, 912, 975, 1015, 1017
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 1 cut(s) 985
FatI CATG 1 cut(s) 973
FblI GTMKAC 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 381, 875, 971
FokI GGATG 5 cut(s) 146, 482, 725, 803, 833
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 381, 875, 971
FspBI CTAG 1 cut(s) 806
GluI GCNGC 3 cut(s) 381, 875, 971
HaeIII GGCC 1 cut(s) 741
HapII CCGG 2 cut(s) 119, 1103
Hin1II CATG 1 cut(s) 977
HincII GTYRAC 2 cut(s) 732, 1071
HindII GTYRAC 2 cut(s) 732, 1071
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 5 cut(s) 38, 290, 365, 668, 1160
HpaII CCGG 2 cut(s) 119, 1103
HphI GGTGA 3 cut(s) 871, 1146, 1178
Hpy166II GTNNAC 5 cut(s) 603, 722, 732, 1071, 1108
Hpy188I TCNGA 9 cut(s) 73, 148, 262, 306, 376, 445, 508, 583, 901
Hpy188III TCNNGA 3 cut(s) 29, 128, 656
Hpy8I GTNNAC 5 cut(s) 603, 722, 732, 1071, 1108
HpyAV CCTTC 5 cut(s) 157, 304, 329, 580, 811
HpyCH4III ACNGT 1 cut(s) 999
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 811
HpyF3I CTNAG 4 cut(s) 145, 236, 375, 834
Hsp92II CATG 1 cut(s) 977
Kzo9I GATC 3 cut(s) 154, 449, 1145
LmnI GCTCC 5 cut(s) 88, 166, 322, 641, 940
Lsp1109I GCAGC 3 cut(s) 367, 886, 982
LweI GCATC 5 cut(s) 268, 380, 401, 460, 769
MaeI CTAG 1 cut(s) 806
MaeIII GTNAC 2 cut(s) 684, 1029
MalI GATC 3 cut(s) 156, 451, 1147
MboI GATC 3 cut(s) 154, 449, 1145
MboII GAAGA 5 cut(s) 235, 319, 437, 973, 989
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 1145
MhlI GDGCHC 1 cut(s) 68
MlyI GAGTC 2 cut(s) 299, 677
MmeI TCCRAC 3 cut(s) 113, 1117, 1123
MnlI CCTC 6 cut(s) 96, 124, 126, 154, 370, 730
MseI TTAA 5 cut(s) 576, 857, 986, 1131, 1192
MslI CAYNNNNRTG 2 cut(s) 132, 888
MspI CCGG 2 cut(s) 119, 1103
MspR9I CCNGG 5 cut(s) 120, 209, 354, 992, 1103
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 3 cut(s) 209, 354, 992
MwoI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 811
NciI CCSGG 2 cut(s) 120, 1103
NdeII GATC 3 cut(s) 154, 449, 1145
NlaIII CATG 1 cut(s) 977
NlaIV GGNNCC 2 cut(s) 84, 643
NmuCI GTSAC 1 cut(s) 1029
NspV TTCGAA 1 cut(s) 161
PfeI GAWTC 3 cut(s) 38, 365, 1160
PflMI CCANNNNNTGG 2 cut(s) 1142, 1163
PfoI TCCNGGA 1 cut(s) 990
PkrI GCNGC 3 cut(s) 382, 876, 972
PleI GAGTC 2 cut(s) 298, 676
PpsI GAGTC 2 cut(s) 298, 676
PshAI GACNNNNGTC 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 986
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 3 cut(s) 207, 352, 990
PspGI CCWGG 3 cut(s) 207, 352, 990
PspN4I GGNNCC 2 cut(s) 84, 643
PspPI GGNCC 2 cut(s) 570, 739
PstNI CAGNNNCTG 1 cut(s) 1163
PsuI RGATCY 1 cut(s) 1145
RsaI GTAC 1 cut(s) 862
RsaNI GTAC 1 cut(s) 861
RseI CAYNNNNRTG 2 cut(s) 132, 888
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 5 cut(s) 576, 857, 986, 1131, 1192
SatI GCNGC 3 cut(s) 381, 875, 971
Sau3AI GATC 3 cut(s) 154, 449, 1145
Sau96I GGNCC 2 cut(s) 570, 739
SchI GAGTC 2 cut(s) 299, 677
ScrFI CCNGG 5 cut(s) 120, 209, 354, 992, 1103
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 5 cut(s) 268, 380, 401, 460, 769
SfcI CTRYAG 1 cut(s) 869
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 132, 888
SmlI CTYRAG 2 cut(s) 665, 748
SmoI CTYRAG 2 cut(s) 665, 748
SsiI CCGC 2 cut(s) 568, 1060
SspMI CTAG 1 cut(s) 806
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 5 cut(s) 118, 207, 352, 990, 1101
TaaI ACNGT 1 cut(s) 999
TaqI TCGA 4 cut(s) 161, 174, 655, 1043
TfiI GAWTC 3 cut(s) 38, 365, 1160
Tru1I TTAA 5 cut(s) 576, 857, 986, 1131, 1192
Tru9I TTAA 5 cut(s) 576, 857, 986, 1131, 1192
TscAI CASTG 3 cut(s) 48, 84, 409
TseFI GTSAC 1 cut(s) 1029
TseI GCWGC 3 cut(s) 380, 874, 970
Tsp45I GTSAC 1 cut(s) 1029
TspDTI ATGAA 7 cut(s) 192, 729, 837, 864, 927, 990, 1022
TspGWI ACGGA 2 cut(s) 335, 568
TspRI CASTG 3 cut(s) 48, 84, 409
Van91I CCANNNNNTGG 2 cut(s) 1142, 1163
VpaK11BI GGWCC 1 cut(s) 570
VspI ATTAAT 1 cut(s) 986
XapI RAATTY 2 cut(s) 1054, 1088
XmiI GTMKAC 1 cut(s) 721
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.