Rh1DG313100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008794
Physical Location & Seq
Reverse (-)
54011897 .. 54017500
5604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG313100.1

Sequence Viewer

Length: 1398 bp
ATGGAGAACCCAGAAGCAAATCAGCTTCCTGAAGTGGATTCACTGCCAGATGGATTTGTTGAGAGCTCGTCAGAGCCACTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGAGGATGATAATGCCTCAGAGATGGATCGTTCGAAGGAGCGTGTCGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCAGGATAAGGGAGAGAAGACACCAAAGCTGAGAACCTTTCCTGTTCCATTATCGGAAACTGATAATTTTGATGCTTCAGTTGAGTCAGTTGAAGTTCCGAAGAAGGCTTCTACGGAGCAGACAGCAGAAGGTTCAGTAGTTGTGCCTGGGTCGGCTGATTCTGCATCTGAGGCTGCAATTCAGGCATCTGGTTGCAGTGAAGTAAAGGAACAAGTTGAAGAAAAATGTGAAAGTTCAGAGAGATCAATTGAAGTAGGCTTGGATGCACCAGCAACCAATCTAAAGGAAATATCTGCTTCGGAGAGTGTTGAAAAAAACAAAAAACCAGATACAACTGAAGCCAAACGGAAAAATCCAAAGCGGACCTTTAAATCAGAGAAGGAGTTTATAGAGTTCACTTTGAAGTATCAACAAGTTCTTGCAGAGAGAGATGGAGCCATTGCTGTTCGAGATAAGCTTGAGTCGTTGTGTAGAGAGTTACAACGCCAAAACAAAATGCTAATGGATGAATGTAGACGGGTGTCAACAGAGGGCCAAAACTTGAGATTAGAGTTATCAACCAAGTTCCAAGATGCAATAAAGGATGTGAGCAAAAAGCTAGATGAGCAGAAGGATGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGTACCAAACTACAGCAGCTCACCCATCAGTATGCTCATTCTGAACAGCAATATGAAACGAAGTTGAAGCAAAAATCATTGGAGCTTCAAATTGCTGATTTGAAGATTAGGCAGCATGAAGAGAAATTAATCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAATTACTATCGACTGAAAAGAATTTGCGGTTGCAGTTGACGGCTGATGGGGAAAAATTCCAACAATTCCCGGATGCATTGTTGAAAAGCAATGAAGTTTTTGAAACATTCAAACAGGAGATTGAAAAGATGGCAAAGTCTATCAAGGACCTCAAGAAGGAAAATGTGTTCTTGAAGAGCAAATGTGATAAGACAGATGTTACTCTTATAGAACTCGTAGATGAGCGTGAGCGGTTGAAGAAACAGTTAGAGAAAACAAAGAATCAGAAAGAAAAGCTCGAATCCTTATGCCGGTCACTTCAAGCAGAAAGGAAACCGAACTCTACCGAGAACAACACCTCCGATGCACTTCCAGTTTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

465

Amino Acids

52.76

Weight (kDa)

5.02

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 174 - 447 4.7e-74 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1264
AccI GTMKAC 1 cut(s) 721
AciI CCGC 3 cut(s) 568, 1060, 1264
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 2 cut(s) 1054, 1088
AcuI CTGAAG 3 cut(s) 51, 267, 564
AfaI GTAC 1 cut(s) 862
AfiI CCNNNNNNNGG 3 cut(s) 214, 1189, 1323
AjnI CCWGG 3 cut(s) 207, 352, 990
AloI GAACNNNNNNTCC 4 cut(s) 1184, 1216, 1355, 1387
AluBI AGCT 9 cut(s) 25, 66, 235, 664, 805, 838, 877, 943, 1309
AluI AGCT 9 cut(s) 25, 66, 235, 664, 805, 838, 877, 943, 1309
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 3 cut(s) 380, 874, 970
ApoI RAATTY 2 cut(s) 1054, 1088
AseI ATTAAT 1 cut(s) 986
AspS9I GGNCC 3 cut(s) 570, 739, 1180
AsuC2I CCSGG 2 cut(s) 120, 1103
AsuHPI GGTGA 1 cut(s) 871
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 2 cut(s) 570, 1180
BanII GRGCYC 1 cut(s) 68
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 367, 886, 982
BccI CCATC 6 cut(s) 44, 145, 632, 891, 1073, 1156
BceAI ACGGC 1 cut(s) 1089
BciT130I CCWGG 3 cut(s) 209, 354, 992
BcnI CCSGG 2 cut(s) 120, 1103
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 1 cut(s) 869
BisI GCNGC 3 cut(s) 381, 875, 971
BlsI GCNGC 3 cut(s) 382, 876, 972
Bme1390I CCNGG 5 cut(s) 120, 209, 354, 992, 1103
Bme18I GGWCC 2 cut(s) 570, 1180
BmgT120I GGNCC 3 cut(s) 570, 739, 1180
BmiI GGNNCC 2 cut(s) 84, 643
BmrFI CCNGG 5 cut(s) 120, 209, 354, 992, 1103
BmsI GCATC 7 cut(s) 268, 380, 401, 460, 769, 1096, 1366
BoxI GACNNNNGTC 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 3 cut(s) 686, 769, 1169
BpuMI CCSGG 2 cut(s) 120, 1103
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 1355, 1385
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 1189, 1323
Bse118I RCCGGY 1 cut(s) 1323
Bse1I ACTGG 2 cut(s) 84, 1385
Bse3DI GCAATG 2 cut(s) 645, 1129
BseBI CCWGG 3 cut(s) 209, 354, 992
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 6 cut(s) 139, 475, 718, 796, 826, 1111
BseLI CCNNNNNNNGG 3 cut(s) 214, 1189, 1323
BseMI GCAATG 2 cut(s) 645, 1129
BseMII CTCAG 4 cut(s) 159, 227, 366, 848
BseNI ACTGG 2 cut(s) 84, 1385
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 367, 886, 982
BshFI GGCC 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 3 cut(s) 119, 1103, 1324
BslFI GGGAC 1 cut(s) 985
BslI CCNNNNNNNGG 3 cut(s) 214, 1189, 1323
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 1 cut(s) 741
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 154, 449
BspACI CCGC 3 cut(s) 568, 1060, 1264
BspANI GGCC 1 cut(s) 741
BspCNI CTCAG 4 cut(s) 158, 228, 367, 847
BspHI TCATGA 1 cut(s) 1394
BspLI GGNNCC 2 cut(s) 84, 643
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 1202
BspT104I TTCGAA 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 1264
BsrDI GCAATG 2 cut(s) 645, 1129
BsrFI RCCGGY 1 cut(s) 1323
BsrI ACTGG 2 cut(s) 84, 1385
BssAI RCCGGY 1 cut(s) 1323
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 154, 449
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 209, 354, 992
Bst4CI ACNGT 2 cut(s) 999, 1278
Bst6I CTCTTC 2 cut(s) 972, 1202
BstBI TTCGAA 1 cut(s) 161
BstDEI CTNAG 4 cut(s) 145, 236, 375, 834
BstENI CCTNNNNNAGG 1 cut(s) 1187
BstF5I GGATG 6 cut(s) 139, 475, 718, 796, 826, 1111
BstKTI GATC 2 cut(s) 157, 452
BstMBI GATC 2 cut(s) 154, 449
BstMWI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 811
BstNI CCWGG 3 cut(s) 209, 354, 992
BstPAI GACNNNNGTC 1 cut(s) 727
BstSCI CCNGG 5 cut(s) 118, 207, 352, 990, 1101
BstSFI CTRYAG 1 cut(s) 869
BstV1I GCAGC 3 cut(s) 367, 886, 982
BstV2I GAAGAC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 741
BtsCI GGATG 6 cut(s) 139, 475, 718, 796, 826, 1111
BtsI GCAGTG 2 cut(s) 41, 409
BtsIMutI CAGTG 3 cut(s) 41, 77, 409
CciI TCATGA 1 cut(s) 1394
Cfr10I RCCGGY 1 cut(s) 1323
Cfr13I GGNCC 3 cut(s) 570, 739, 1180
Csp6I GTAC 1 cut(s) 861
CviAII CATG 2 cut(s) 974, 1395
CviQI GTAC 1 cut(s) 861
DdeI CTNAG 4 cut(s) 145, 236, 375, 834
DpnI GATC 2 cut(s) 156, 451
DpnII GATC 2 cut(s) 154, 449
DraI TTTAAA 1 cut(s) 577
Eam1104I CTCTTC 2 cut(s) 972, 1202
EarI CTCTTC 2 cut(s) 972, 1202
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 570, 1180
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 3 cut(s) 51, 267, 564
EcoICRI GAGCTC 1 cut(s) 66
EcoNI CCTNNNNNAGG 1 cut(s) 1187
EcoO109I RGGNCCY 1 cut(s) 1180
EcoRII CCWGG 3 cut(s) 207, 352, 990
EcoT22I ATGCAT 1 cut(s) 1111
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 2 cut(s) 977, 1398
FaiI YATR 9 cut(s) 596, 891, 912, 975, 1015, 1017, 1241, 1321, 1396
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 1 cut(s) 985
FatI CATG 2 cut(s) 973, 1394
FblI GTMKAC 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 381, 875, 971
FokI GGATG 6 cut(s) 146, 482, 725, 803, 833, 1118
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 381, 875, 971
FspBI CTAG 1 cut(s) 806
GluI GCNGC 3 cut(s) 381, 875, 971
HaeIII GGCC 1 cut(s) 741
HapII CCGG 3 cut(s) 119, 1103, 1324
Hin1II CATG 2 cut(s) 977, 1398
HincII GTYRAC 2 cut(s) 732, 1071
HindII GTYRAC 2 cut(s) 732, 1071
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 6 cut(s) 38, 290, 365, 668, 1294, 1313
HpaII CCGG 3 cut(s) 119, 1103, 1324
HphI GGTGA 1 cut(s) 871
Hpy166II GTNNAC 4 cut(s) 603, 722, 732, 1071
Hpy188III TCNNGA 6 cut(s) 29, 128, 656, 1186, 1204, 1395
Hpy8I GTNNAC 4 cut(s) 603, 722, 732, 1071
HpyAV CCTTC 6 cut(s) 157, 304, 329, 580, 811, 1183
HpyCH4III ACNGT 2 cut(s) 999, 1278
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 811
HpyF3I CTNAG 4 cut(s) 145, 236, 375, 834
Hsp92II CATG 2 cut(s) 977, 1398
Kzo9I GATC 2 cut(s) 154, 449
LguI GCTCTTC 1 cut(s) 1202
LmnI GCTCC 5 cut(s) 88, 166, 322, 641, 940
Lsp1109I GCAGC 3 cut(s) 367, 886, 982
LweI GCATC 7 cut(s) 268, 380, 401, 460, 769, 1096, 1366
MaeI CTAG 1 cut(s) 806
MaeIII GTNAC 4 cut(s) 684, 1029, 1231, 1326
MalI GATC 2 cut(s) 156, 451
MbiI CCGCTC 1 cut(s) 1264
MboI GATC 2 cut(s) 154, 449
MboII GAAGA 7 cut(s) 235, 319, 437, 973, 989, 1219, 1282
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 1 cut(s) 68
MlyI GAGTC 2 cut(s) 299, 677
MmeI TCCRAC 2 cut(s) 113, 1117
MnlI CCTC 8 cut(s) 96, 124, 126, 154, 370, 730, 1193, 1381
Mph1103I ATGCAT 1 cut(s) 1111
MseI TTAA 3 cut(s) 576, 857, 986
MslI CAYNNNNRTG 2 cut(s) 132, 888
MspI CCGG 3 cut(s) 119, 1103, 1324
MspR9I CCNGG 5 cut(s) 120, 209, 354, 992, 1103
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 3 cut(s) 209, 354, 992
MwoI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 811
NciI CCSGG 2 cut(s) 120, 1103
NdeII GATC 2 cut(s) 154, 449
NlaIII CATG 2 cut(s) 977, 1398
NlaIV GGNNCC 2 cut(s) 84, 643
NmuCI GTSAC 2 cut(s) 1029, 1326
NsiI ATGCAT 1 cut(s) 1111
NspV TTCGAA 1 cut(s) 161
PagI TCATGA 1 cut(s) 1394
PciSI GCTCTTC 1 cut(s) 1202
PfeI GAWTC 4 cut(s) 38, 365, 1294, 1313
PfoI TCCNGGA 2 cut(s) 990, 1101
PkrI GCNGC 3 cut(s) 382, 876, 972
PleI GAGTC 2 cut(s) 298, 676
PpsI GAGTC 2 cut(s) 298, 676
PpuMI RGGWCCY 1 cut(s) 1180
PshAI GACNNNNGTC 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 986
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 1180
Psp6I CCWGG 3 cut(s) 207, 352, 990
PspGI CCWGG 3 cut(s) 207, 352, 990
PspN4I GGNNCC 2 cut(s) 84, 643
PspPI GGNCC 3 cut(s) 570, 739, 1180
PspPPI RGGWCCY 1 cut(s) 1180
RsaI GTAC 1 cut(s) 862
RsaNI GTAC 1 cut(s) 861
RseI CAYNNNNRTG 2 cut(s) 132, 888
SacI GAGCTC 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 1202
SaqAI TTAA 3 cut(s) 576, 857, 986
SatI GCNGC 3 cut(s) 381, 875, 971
Sau3AI GATC 2 cut(s) 154, 449
Sau96I GGNCC 3 cut(s) 570, 739, 1180
SchI GAGTC 2 cut(s) 299, 677
ScrFI CCNGG 5 cut(s) 120, 209, 354, 992, 1103
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 7 cut(s) 268, 380, 401, 460, 769, 1096, 1366
SfcI CTRYAG 1 cut(s) 869
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 2 cut(s) 570, 1180
SmiMI CAYNNNNRTG 2 cut(s) 132, 888
SmlI CTYRAG 3 cut(s) 665, 748, 1184
SmoI CTYRAG 3 cut(s) 665, 748, 1184
SsiI CCGC 3 cut(s) 568, 1060, 1264
SspMI CTAG 1 cut(s) 806
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 5 cut(s) 118, 207, 352, 990, 1101
TaaI ACNGT 2 cut(s) 999, 1278
TaqI TCGA 5 cut(s) 161, 174, 655, 1043, 1311
TfiI GAWTC 4 cut(s) 38, 365, 1294, 1313
Tru1I TTAA 3 cut(s) 576, 857, 986
Tru9I TTAA 3 cut(s) 576, 857, 986
TscAI CASTG 3 cut(s) 48, 84, 409
TseFI GTSAC 2 cut(s) 1029, 1326
TseI GCWGC 3 cut(s) 380, 874, 970
Tsp45I GTSAC 2 cut(s) 1029, 1326
TspDTI ATGAA 9 cut(s) 192, 729, 837, 864, 927, 990, 1022, 1140, 1380
TspGWI ACGGA 2 cut(s) 335, 568
TspRI CASTG 3 cut(s) 48, 84, 409
VpaK11BI GGWCC 2 cut(s) 570, 1180
VspI ATTAAT 1 cut(s) 986
XagI CCTNNNNNAGG 1 cut(s) 1187
XapI RAATTY 2 cut(s) 1054, 1088
XmiI GTMKAC 1 cut(s) 721
XspI CTAG 1 cut(s) 806
Zsp2I ATGCAT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.