FvH4_7g19882

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008794
Physical Location & Seq
Reverse (-)
16309792 .. 16315500
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19882.t1

Sequence Viewer

Length: 1392 bp
ATGGAGAACCCAGACGCAAATCAGCTTCCTGAAGTGGATTCATTGCCAGATGGATTTGTTGACAGCTCCACAGAGCCGCTGGCTCCTCCAACTCCTACCTTAGAACAGGAGAAGGCTCCGGGCAATCATGAGGATGATAATGCCTCGGAGAGGGATTGCTCAAAGGAGCCTGTGGATAAATCGGGTGCTAATGAGTTGCAAACGAGCCAGGATAGGGGAGAGAAGCCGCCCAAACTGAGAACCTTTCCTGTTCCATTATCGGAATCTGATAGTTTTGATTCTCCAGTAGAATTAGTTGAAGTTCTGAATAAAGTGTCTACAGAGCAGACTGTAGAAGACTCACTAGTCATGCCCGGGATGGCTGACTCCGTGTCTGAGGCTGCAATTCAGGCATTTAATTGCAGTGAAGTAAAGGAACAAGTTGAAGCAAAATCTGAAAGTTCAGAGAGAACAACTGAAGGAGGCTTGGACGCAACGACAACCAATCTAAAGGAAATATCTGCTTCAGAAACTGTTGAAAAGAACAAAAAACCAGATACAACTGAAACCAAACGGAAAAATCCAAAGCGGACCTTCAAATCAGAGAAGGAGTTTATAGAGTTCATGTTGAAGTATCAACAAGTTACTGCAGAGAGAGATGGAGCCATTGCTGTTCGAGATAAGCTTGAGTCATTGTGTAGAGAGTTACAACGCCAGAACAAAATGCTAATGGATGAATGTAGACGGGTGTCAACAGAGGGCCAAAACTTGAGATTAGAGTTATCAACCAAGTTCCAAGATGCAATAAAGGATGTGAGCAAAAAGCTAGATGAGCAGAAGGATGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGTACCAAGCTACAGCAGCTCACCCATCAGTATGTTCATTCTGAACAGCAATATGAAACAAAGTTGAAACAAAAATCATTGGAGCTTCAAATTGCTGATTTGAAAATTAAGCAGCATGAAGAGAAATTAATTCAGGAACAAGCCCAGATGAAATTATATGCAGAACAGGTGTCACAGTTACTATCAACTGAAAATAACTTGCGCTTACAATTGACAGCTGATGGGGAAAAATTCCAACAATTCCAGGATGCATTGTCGAAAAGCAATGAAGTTTTCGAAACATTCAAACAAGAGATTGAAAAGATGGCAAAGTCTATCAAGGACCTCAAGAAGGAAAATTTATTCTTGAAGAGCAAATGTGATAAGACAGATGTTACTCTTATAGAACTCGTAGATGAGCGTGAGCGGCTGAAGAAACAGTTGGAAAAAACAAAGAACCAGAAAGAGAAGCTCGAATCCTTATGCCGCTCACTTCAAGCCGAAAGGAAACAGAACTCCTCCGAGAGCAACTCCTCTGATTCAGTTCCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

464

Amino Acids

52.72

Weight (kDa)

4.97

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 174 - 447 7.7e-75 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccBSI CCGCTC 2 cut(s) 1264, 1326
AccI GTMKAC 2 cut(s) 317, 721
AciI CCGC 5 cut(s) 77, 227, 568, 1264, 1324
AcsI RAATTY 2 cut(s) 1088, 1195
AcuI CTGAAG 4 cut(s) 51, 477, 489, 1289
AfaI GTAC 1 cut(s) 862
AfiI CCNNNNNNNGG 3 cut(s) 150, 214, 1189
AhdI GACNNNNNGTC 1 cut(s) 370
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 2 cut(s) 207, 1101
AjuI GAANNNNNNNTTGG 2 cut(s) 1262, 1294
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 3 cut(s) 380, 874, 970
ApoI RAATTY 2 cut(s) 1088, 1195
AseI ATTAAT 1 cut(s) 986
AspLEI GCGC 1 cut(s) 1062
AspS9I GGNCC 3 cut(s) 570, 739, 1180
AsuC2I CCSGG 3 cut(s) 120, 354, 355
AsuHPI GGTGA 1 cut(s) 871
AsuII TTCGAA 1 cut(s) 1134
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 2 cut(s) 570, 1180
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 3 cut(s) 367, 886, 982
BccI CCATC 6 cut(s) 44, 352, 632, 891, 1073, 1156
BciT130I CCWGG 2 cut(s) 209, 1103
BcnI CCSGG 3 cut(s) 120, 354, 355
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 2 cut(s) 344, 806
BfmI CTRYAG 4 cut(s) 318, 330, 627, 869
BisI GCNGC 7 cut(s) 77, 227, 381, 875, 971, 1265, 1324
BlsI GCNGC 7 cut(s) 78, 228, 382, 876, 972, 1266, 1325
Bme1390I CCNGG 5 cut(s) 120, 209, 354, 355, 1103
Bme18I GGWCC 2 cut(s) 570, 1180
BmeRI GACNNNNNGTC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 3 cut(s) 570, 739, 1180
BmiI GGNNCC 4 cut(s) 84, 117, 168, 643
BmrFI CCNGG 5 cut(s) 120, 209, 354, 355, 1103
BmsI GCATC 2 cut(s) 769, 1096
BoxI GACNNNNGTC 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 1352, 1384
BpmI CTGGAG 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 1134
BpuEI CTTGAG 3 cut(s) 686, 769, 1169
BpuMI CCSGG 3 cut(s) 120, 354, 355
BsaJI CCNNGG 2 cut(s) 144, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 214, 1189
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 3 cut(s) 41, 645, 1129
BseBI CCWGG 2 cut(s) 209, 1103
BseDI CCNNGG 2 cut(s) 144, 353
BseGI GGATG 6 cut(s) 139, 363, 718, 796, 826, 1111
BseLI CCNNNNNNNGG 3 cut(s) 150, 214, 1189
BseMI GCAATG 3 cut(s) 41, 645, 1129
BseMII CTCAG 3 cut(s) 227, 366, 848
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 3 cut(s) 75, 1345, 1360
BseXI GCAGC 3 cut(s) 367, 886, 982
BshFI GGCC 1 cut(s) 741
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 2 cut(s) 119, 354
BslI CCNNNNNNNGG 3 cut(s) 150, 214, 1189
BsnI GGCC 1 cut(s) 741
BsoBI CYCGRG 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 1134
BspACI CCGC 5 cut(s) 77, 227, 568, 1264, 1324
BspANI GGCC 1 cut(s) 741
BspCNI CTCAG 3 cut(s) 228, 367, 847
BspHI TCATGA 2 cut(s) 127, 1388
BspLI GGNNCC 4 cut(s) 84, 117, 168, 643
BspMAI CTGCAG 1 cut(s) 631
BspQI GCTCTTC 1 cut(s) 1202
BspT104I TTCGAA 1 cut(s) 1134
BsrBI CCGCTC 2 cut(s) 1264, 1326
BsrDI GCAATG 3 cut(s) 41, 645, 1129
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 144, 353
Bst2UI CCWGG 2 cut(s) 209, 1103
Bst4CI ACNGT 4 cut(s) 331, 514, 1035, 1278
Bst6I CTCTTC 2 cut(s) 972, 1202
BstBI TTCGAA 1 cut(s) 1134
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 4 cut(s) 100, 236, 375, 834
BstENI CCTNNNNNAGG 2 cut(s) 148, 1187
BstF5I GGATG 6 cut(s) 139, 363, 718, 796, 826, 1111
BstHHI GCGC 1 cut(s) 1062
BstMWI GCNNNNNNNGC 4 cut(s) 389, 811, 874, 1264
BstNI CCWGG 2 cut(s) 209, 1103
BstPAI GACNNNNGTC 1 cut(s) 727
BstSCI CCNGG 5 cut(s) 118, 207, 352, 353, 1101
BstSFI CTRYAG 4 cut(s) 318, 330, 627, 869
BstV1I GCAGC 3 cut(s) 367, 886, 982
BstV2I GAAGAC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 741
BtsCI GGATG 6 cut(s) 139, 363, 718, 796, 826, 1111
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 81
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 2 cut(s) 127, 1388
CfoI GCGC 1 cut(s) 1062
Cfr13I GGNCC 3 cut(s) 570, 739, 1180
Cfr9I CCCGGG 1 cut(s) 353
CseI GACGC 2 cut(s) 23, 479
Csp6I GTAC 1 cut(s) 861
CviAII CATG 5 cut(s) 128, 349, 604, 974, 1389
CviQI GTAC 1 cut(s) 861
DdeI CTNAG 4 cut(s) 100, 236, 375, 834
DrdI GACNNNNNNGTC 1 cut(s) 344
DriI GACNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 344
Eam1104I CTCTTC 2 cut(s) 972, 1202
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 2 cut(s) 972, 1202
Eco47I GGWCC 2 cut(s) 570, 1180
Eco57I CTGAAG 4 cut(s) 51, 477, 489, 1289
Eco88I CYCGRG 1 cut(s) 353
EcoNI CCTNNNNNAGG 2 cut(s) 148, 1187
EcoO109I RGGNCCY 1 cut(s) 1180
EcoRII CCWGG 2 cut(s) 207, 1101
EcoT22I ATGCAT 1 cut(s) 1111
FaeI CATG 5 cut(s) 131, 352, 607, 977, 1392
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FatI CATG 5 cut(s) 127, 348, 603, 973, 1388
FblI GTMKAC 2 cut(s) 317, 721
Fnu4HI GCNGC 7 cut(s) 77, 227, 381, 875, 971, 1265, 1324
FokI GGATG 6 cut(s) 146, 370, 725, 803, 833, 1118
Fsp4HI GCNGC 7 cut(s) 77, 227, 381, 875, 971, 1265, 1324
FspBI CTAG 2 cut(s) 344, 806
GlaI GCGC 1 cut(s) 1061
GluI GCNGC 7 cut(s) 77, 227, 381, 875, 971, 1265, 1324
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 741
HapII CCGG 2 cut(s) 119, 354
HgaI GACGC 2 cut(s) 23, 479
HhaI GCGC 1 cut(s) 1062
Hin1II CATG 5 cut(s) 131, 352, 607, 977, 1392
Hin6I GCGC 1 cut(s) 1060
HinP1I GCGC 1 cut(s) 1060
HincII GTYRAC 2 cut(s) 61, 732
HindII GTYRAC 2 cut(s) 61, 732
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 8 cut(s) 38, 263, 278, 338, 365, 668, 1313, 1376
HpaII CCGG 2 cut(s) 119, 354
HphI GGTGA 1 cut(s) 871
Hpy166II GTNNAC 4 cut(s) 61, 318, 722, 732
Hpy188III TCNNGA 7 cut(s) 29, 128, 656, 992, 1186, 1204, 1389
Hpy8I GTNNAC 4 cut(s) 61, 318, 722, 732
HpyAV CCTTC 6 cut(s) 106, 452, 580, 583, 811, 1183
HpyCH4III ACNGT 4 cut(s) 331, 514, 1035, 1278
HpyCH4V TGCA 7 cut(s) 199, 383, 402, 629, 782, 1019, 1109
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 811, 874, 1264
HpyF3I CTNAG 4 cut(s) 100, 236, 375, 834
Hsp92II CATG 5 cut(s) 131, 352, 607, 977, 1392
HspAI GCGC 1 cut(s) 1060
LguI GCTCTTC 1 cut(s) 1202
LmnI GCTCC 6 cut(s) 71, 88, 121, 166, 641, 940
Lsp1109I GCAGC 3 cut(s) 367, 886, 982
LweI GCATC 2 cut(s) 769, 1096
MaeI CTAG 2 cut(s) 344, 806
MaeIII GTNAC 5 cut(s) 622, 684, 1029, 1035, 1231
MbiI CCGCTC 2 cut(s) 1264, 1326
MboII GAAGA 4 cut(s) 347, 989, 1219, 1282
MfeI CAATTG 1 cut(s) 1067
MlyI GAGTC 3 cut(s) 332, 359, 677
MmeI TCCRAC 3 cut(s) 113, 1117, 1260
Mph1103I ATGCAT 1 cut(s) 1111
MseI TTAA 4 cut(s) 396, 857, 966, 986
MslI CAYNNNNRTG 2 cut(s) 132, 888
MspA1I CMGCKG 2 cut(s) 79, 1076
MspI CCGG 2 cut(s) 119, 354
MspR9I CCNGG 5 cut(s) 120, 209, 354, 355, 1103
MunI CAATTG 1 cut(s) 1067
MvaI CCWGG 2 cut(s) 209, 1103
MwoI GCNNNNNNNGC 4 cut(s) 389, 811, 874, 1264
NciI CCSGG 3 cut(s) 120, 354, 355
NlaIII CATG 5 cut(s) 131, 352, 607, 977, 1392
NlaIV GGNNCC 4 cut(s) 84, 117, 168, 643
NmuCI GTSAC 1 cut(s) 1029
NsiI ATGCAT 1 cut(s) 1111
NspV TTCGAA 1 cut(s) 1134
PagI TCATGA 2 cut(s) 127, 1388
PciSI GCTCTTC 1 cut(s) 1202
PfeI GAWTC 5 cut(s) 38, 263, 278, 1313, 1376
PfoI TCCNGGA 1 cut(s) 1101
PkrI GCNGC 7 cut(s) 78, 228, 382, 876, 972, 1266, 1325
PleI GAGTC 3 cut(s) 332, 359, 676
PpsI GAGTC 3 cut(s) 332, 359, 676
PpuMI RGGWCCY 1 cut(s) 1180
PshAI GACNNNNGTC 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 1180
Psp6I CCWGG 2 cut(s) 207, 1101
PspGI CCWGG 2 cut(s) 207, 1101
PspN4I GGNNCC 4 cut(s) 84, 117, 168, 643
PspPI GGNCC 3 cut(s) 570, 739, 1180
PspPPI RGGWCCY 1 cut(s) 1180
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 1 cut(s) 862
RsaNI GTAC 1 cut(s) 861
RseI CAYNNNNRTG 2 cut(s) 132, 888
SapI GCTCTTC 1 cut(s) 1202
SaqAI TTAA 4 cut(s) 396, 857, 966, 986
SatI GCNGC 7 cut(s) 77, 227, 381, 875, 971, 1265, 1324
Sau96I GGNCC 3 cut(s) 570, 739, 1180
SchI GAGTC 3 cut(s) 332, 359, 677
ScrFI CCNGG 5 cut(s) 120, 209, 354, 355, 1103
SfaNI GCATC 2 cut(s) 769, 1096
SfcI CTRYAG 4 cut(s) 318, 330, 627, 869
SfuI TTCGAA 1 cut(s) 1134
SinI GGWCC 2 cut(s) 570, 1180
SmaI CCCGGG 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 132, 888
SmlI CTYRAG 3 cut(s) 665, 748, 1184
SmoI CTYRAG 3 cut(s) 665, 748, 1184
SpeI ACTAGT 1 cut(s) 343
SsiI CCGC 5 cut(s) 77, 227, 568, 1264, 1324
SspMI CTAG 2 cut(s) 344, 806
StyD4I CCNGG 5 cut(s) 118, 207, 352, 353, 1101
TaaI ACNGT 4 cut(s) 331, 514, 1035, 1278
TaqI TCGA 4 cut(s) 655, 1115, 1134, 1311
TauI GCSGC 4 cut(s) 79, 229, 1267, 1326
TfiI GAWTC 5 cut(s) 38, 263, 278, 1313, 1376
Tru1I TTAA 4 cut(s) 396, 857, 966, 986
Tru9I TTAA 4 cut(s) 396, 857, 966, 986
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 1 cut(s) 1029
TseI GCWGC 3 cut(s) 380, 874, 970
Tsp45I GTSAC 1 cut(s) 1029
TspGWI ACGGA 2 cut(s) 358, 568
TspMI CCCGGG 1 cut(s) 353
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 570, 1180
VspI ATTAAT 1 cut(s) 986
XagI CCTNNNNNAGG 2 cut(s) 148, 1187
XapI RAATTY 2 cut(s) 1088, 1195
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmaI CCCGGG 1 cut(s) 353
XmiI GTMKAC 2 cut(s) 317, 721
XspI CTAG 2 cut(s) 344, 806
Zsp2I ATGCAT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.