Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008794

Physical Location & Seq

Genomic Coordinates Reverse (-)

19670796 .. 19675068

Gene Structure 4273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17130.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCAAAGTTCAGAGAGACATTTATATGCGCAGCTGAAGCGCCAGCGACCAATTTGAAGGAAACGTCTTCATTGGAGAGTGTTGAAACTTTGAAAAACAGAAAAACAGAATCCACTGAAACCAAACGTAAGAGTGTAAAGCGTACCTTTAAATCAGAAAAGGAGTTCATAGAGTTCACTTTGAAGTATCAACAAGCTCTTGCCGAAAGAGATTCGGCCATTTCTGTTCGAGATAAGCTTGAGTCCTTGTGCAGGGAGTTGCAACGCCAGAACAAAGTACTAATGGATGAGTGCAAACGGGTGTCAACAGAGGGGCAGAACTTGAGATTAGATTTATCAGTCAAGTTCCAAGATGCAATAAAGGATGTGAGCAATAAACTGGATGAGCAAAAGGAAGAATGTATCTCTCAGCTAAAGGAGAATGAAACGTTAAGAACTAAGCTACAGCAGCTCAACTATCAGCACGCTCTTTCTGAACAGCAATATGAACAGAAGTTAAAGCAGAAATCGCTGGAGCTTCAAATTGCTGATTTGAAGACTAAGCAGCATGAAGAGAAATCACTCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAGTTACTAGCAACTGAAAAGAATTTGCGCTTACAGTTGACGGCTGATGGAGAGAAGTTCCAACAATTTCAGGATGCATTGTTGAAAAGCAATGAAGTTTTCGAGACATTTAAACAGGAGATTGAAAAGATGGCAAAGTCCATCAAGGAACTCAAGAAGGAAAACTTATTCTTGAAGAGCAAATGTGAGAAAACAGATGTCACTCTTATAGAACTCGTAGACGAGCGTGAACGGTTGAAGAAACAGTTGGAGAAAACAAAGAACCAGAAAGAAAAGCTTGAATCGCTGTGCCGGTCACTTCAAGCAGAAAGGAAACAGAACTCCACTGGGAGCAACATCTCCGATTCGGTTCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Taxilin

Protein Analysis

322

Amino Acids

37.49

Weight (kDa)

8.66

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50840 AT5G50840
fragaria_vesca	FvH4_7g19882
malus_domestica	MD01G1111100.v1.1 MD07G1177300.v1.1
prunus_persica	Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1
pyrus_communis	pycom01g13840 pycom07g17130
rosa_chinensis	RchiOBHm_Chr1g0363881
rosa_laevigata	RLG00000027538
rosa_multiflora	Rmu_sc0033310.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292890
rosa_rugosa	Rorug01G0310700
rosa_samantha	Rh1AG318600 Rh1BG281800 Rh1CG298200 Rh1DG313100
rosa_wichuraiana	Rw1G028280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	825
AclI	AACGTT	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	145, 279
AfiI	CCNNNNNNNGG	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AluBI	AGCT	8 cut(s)	35, 197, 238, 412, 442, 451, 517, 883
AluI	AGCT	8 cut(s)	35, 197, 238, 412, 442, 451, 517, 883
Alw26I	GTCTC	2 cut(s)	11, 704
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	3 cut(s)	32, 448, 544
ApoI	RAATTY	1 cut(s)	628
AspLEI	GCGC	3 cut(s)	32, 43, 636
BbsI	GAAGAC	2 cut(s)	60, 542
BbvI	GCAGC	3 cut(s)	44, 460, 556
BccI	CCATC	3 cut(s)	647, 730, 755
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	11, 704
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	3 cut(s)	33, 449, 545
BlsI	GCNGC	3 cut(s)	34, 450, 546
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	957
BmrFI	CCNGG	1 cut(s)	566
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	2 cut(s)	343, 670
BmuI	ACTGGG	1 cut(s)	942
BpiI	GAAGAC	2 cut(s)	60, 542
BpmI	CTGGAG	2 cut(s)	533, 548
BpuEI	CTTGAG	3 cut(s)	260, 343, 743
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	897
Bse1I	ACTGG	2 cut(s)	384, 937
Bse3DI	GCAATG	1 cut(s)	703
BseBI	CCWGG	1 cut(s)	566
BseGI	GGATG	4 cut(s)	292, 370, 388, 685
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	2 cut(s)	384, 937
BseXI	GCAGC	3 cut(s)	44, 460, 556
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	898
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	11, 704
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	957
BspQI	GCTCTTC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	703
BsrFI	RCCGGY	1 cut(s)	897
BsrI	ACTGG	2 cut(s)	384, 937
BssAI	RCCGGY	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	5 cut(s)	573, 609, 642, 840, 852
Bst6I	CTCTTC	2 cut(s)	546, 776
BstC8I	GCNNGC	2 cut(s)	45, 465
BstDEI	CTNAG	3 cut(s)	408, 438, 540
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	4 cut(s)	292, 370, 388, 685
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	32, 43, 636
BstMAI	GTCTC	2 cut(s)	11, 704
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 448, 508, 889
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	1 cut(s)	443
BstV1I	GCAGC	3 cut(s)	44, 460, 556
BstV2I	GAAGAC	2 cut(s)	60, 542
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	4 cut(s)	292, 370, 388, 685
BtsIMutI	CAGTG	2 cut(s)	114, 930
Cac8I	GCNNGC	2 cut(s)	45, 465
CfoI	GCGC	3 cut(s)	32, 43, 636
Cfr10I	RCCGGY	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	144, 278
CviAII	CATG	1 cut(s)	548
CviQI	GTAC	2 cut(s)	144, 278
DdeI	CTNAG	3 cut(s)	408, 438, 540
DraI	TTTAAA	2 cut(s)	151, 718
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	546, 776
EarI	CTCTTC	2 cut(s)	546, 776
Eco57I	CTGAAG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	685
FaeI	CATG	1 cut(s)	551
FaiI	YATR	8 cut(s)	26, 28, 170, 486, 549, 589, 591, 815
FalI	AAGNNNNNCTT	6 cut(s)	131, 163, 755, 787, 867, 899
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	3 cut(s)	33, 449, 545
FokI	GGATG	4 cut(s)	299, 377, 395, 692
Fsp4HI	GCNGC	3 cut(s)	33, 449, 545
FspBI	CTAG	1 cut(s)	614
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	3 cut(s)	31, 42, 635
GluI	GCNGC	3 cut(s)	33, 449, 545
GsuI	CTGGAG	2 cut(s)	533, 548
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	898
HhaI	GCGC	3 cut(s)	32, 43, 636
Hin1II	CATG	1 cut(s)	551
Hin6I	GCGC	3 cut(s)	30, 41, 634
HinP1I	GCGC	3 cut(s)	30, 41, 634
HincII	GTYRAC	2 cut(s)	306, 645
HindII	GTYRAC	2 cut(s)	306, 645
HindIII	AAGCTT	2 cut(s)	236, 881
HinfI	GANTC	5 cut(s)	110, 212, 242, 887, 950
HpaII	CCGG	1 cut(s)	898
Hpy166II	GTNNAC	5 cut(s)	177, 306, 645, 826, 836
Hpy188I	TCNGA	4 cut(s)	14, 157, 475, 949
Hpy188III	TCNNGA	6 cut(s)	230, 677, 709, 760, 778, 963
Hpy8I	GTNNAC	5 cut(s)	177, 306, 645, 826, 836
HpyAV	CCTTC	2 cut(s)	52, 757
HpyCH4III	ACNGT	5 cut(s)	573, 609, 642, 840, 852
HpyCH4IV	ACGT	3 cut(s)	65, 127, 428
HpyCH4V	TGCA	6 cut(s)	252, 262, 294, 356, 593, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 448, 508, 889
HpyF3I	CTNAG	3 cut(s)	408, 438, 540
HpySE526I	ACGT	3 cut(s)	65, 127, 428
Hsp92II	CATG	1 cut(s)	551
HspAI	GCGC	3 cut(s)	30, 41, 634
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	2 cut(s)	514, 936
Lsp1109I	GCAGC	3 cut(s)	44, 460, 556
LweI	GCATC	2 cut(s)	343, 670
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	3 cut(s)	65, 127, 428
MaeIII	GTNAC	4 cut(s)	603, 609, 805, 900
MboII	GAAGA	6 cut(s)	60, 407, 547, 563, 793, 856
MluCI	AATT	5 cut(s)	52, 522, 584, 628, 671
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	2 cut(s)	691, 834
MnlI	CCTC	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	685
MseI	TTAA	4 cut(s)	150, 431, 497, 717
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	898
MspR9I	CCNGG	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	38, 448, 508, 889
NlaIII	CATG	1 cut(s)	551
NlaIV	GGNNCC	1 cut(s)	957
NmuCI	GTSAC	3 cut(s)	603, 805, 900
NsbI	TGCGCA	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	776
PfeI	GAWTC	4 cut(s)	110, 212, 887, 950
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	3 cut(s)	34, 450, 546
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp1406I	AACGTT	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	957
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	145, 279
RsaNI	GTAC	2 cut(s)	144, 278
RseI	CAYNNNNRTG	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	4 cut(s)	150, 431, 497, 717
SatI	GCNGC	3 cut(s)	33, 449, 545
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	566
SfaNI	GCATC	2 cut(s)	343, 670
SfcI	CTRYAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	3 cut(s)	239, 322, 758
SmoI	CTYRAG	3 cut(s)	239, 322, 758
Sse9I	AATT	5 cut(s)	52, 522, 584, 628, 671
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	5 cut(s)	573, 609, 642, 840, 852
TaiI	ACGT	3 cut(s)	68, 130, 431
TaqI	TCGA	2 cut(s)	229, 708
TasI	AATT	5 cut(s)	52, 522, 584, 628, 671
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	4 cut(s)	110, 212, 887, 950
Tru1I	TTAA	4 cut(s)	150, 431, 497, 717
Tru9I	TTAA	4 cut(s)	150, 431, 497, 717
TscAI	CASTG	2 cut(s)	121, 937
TseFI	GTSAC	3 cut(s)	603, 805, 900
TseI	GCWGC	3 cut(s)	32, 448, 544
Tsp45I	GTSAC	3 cut(s)	603, 805, 900
TspDTI	ATGAA	7 cut(s)	60, 157, 438, 501, 564, 596, 714
TspRI	CASTG	2 cut(s)	121, 937
XagI	CCTNNNNNAGG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	825
XspI	CTAG	1 cut(s)	614
ZrmI	AGTACT	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.