Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008794

Physical Location & Seq

Genomic Coordinates Reverse (-)

14189899 .. 14194287

Gene Structure 4389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13840.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCCTGATTCATCTGTTTCTGTTTCTGAGGCTTCGGTTGGGGGATCTGAAGGCGGTGAGGTAAAGGAGGAACAAGTTGAAGCAAGATGTCAAAGTTCAGAGAGACCAGCTGAAAGAGGCTCAGATGCGTCACCAACCAATTTGAAGGAAACGTCTTCATTGGAGAGTGTTGAAACTTTGAAAAACAGAAAAACAGAATCCACTGAAACTAAACGTAAGAGTGTAAAGCGTACCTTTAAATCAGAAAAGGAGTTCATAGAATTCACCTTGAAGTATCAACAAGCTCTTGCCGAAAGAGATTCGGCCATTTCTGTTCGAGATAAGCTTGAGTCCTTGTGCAGGGAGTTACAACGCCAGAACAAAGTATTAATGGATGAGTGCAAACGGGTGTCAACAGAGGGGCAGAACTTGAGATTAGATTTATCAGTCAAGTTCCAAGATGCAATAAAGGATGTGAGCACTAAACTGGATGAGCAAAAGGAAGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGAACTAAGCTCCAGCAGCTTACTTATCAGCATGCTCTTTCTGAACAACAATATGAACAGAAGTTAAAGCAGAAATCACTGGAGCTTCAAATTGCTGATTTGAAGACTAAGCAGCATGAAGAGAAATTACTCCAGGAAGAGTCCCAGATGAAATTATATGCTGAACAGGTGTCACAGTTACTATCAACTGAAAAGAATTTGCGCTTACAGTTGACGGCTGATGGGGAGAAATTCCAACAGTTTCAGGACGCATTGTTGAAAAGCAATGAAGTTTTTGAGACATTTAAACAGGAGATTGAAAAGATGGCAAAGTCCATCAAGGAACTCAAGAAGGAAAACTTATTCTTGAAGAGCAAATGTGAGAAAACAGATGTCACTCTTATAGAACTTGTAGACGAGCGTGAACGGTTGAAGAAACAGTTGGTGAAAACAAAGAACCAGAAAGAAATGCTTGAATCATTGTGCAGGTCACTTCAAGCAGAAAGGAAACAGAACTCCACTGGGAGCAACAACTCCGATTCTGTTCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Taxilin

Protein Analysis

351

Amino Acids

40.33

Weight (kDa)

6.09

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50840 AT5G50840
fragaria_vesca	FvH4_7g19882
malus_domestica	MD01G1111100.v1.1 MD07G1177300.v1.1
prunus_persica	Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1
pyrus_communis	pycom01g13840 pycom07g17130
rosa_chinensis	RchiOBHm_Chr1g0363881
rosa_laevigata	RLG00000027538
rosa_multiflora	Rmu_sc0033310.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292890
rosa_rugosa	Rorug01G0310700
rosa_samantha	Rh1AG318600 Rh1BG281800 Rh1CG298200 Rh1DG313100
rosa_wichuraiana	Rw1G028280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	975
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	260, 715, 749
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	651
AjuI	GAANNNNNNNTTGG	2 cut(s)	923, 955
AluBI	AGCT	7 cut(s)	110, 284, 325, 499, 529, 538, 604
AluI	AGCT	7 cut(s)	110, 284, 325, 499, 529, 538, 604
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	2 cut(s)	97, 791
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	535, 631
ApoI	RAATTY	3 cut(s)	260, 715, 749
AseI	ATTAAT	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	723
AsuHPI	GGTGA	4 cut(s)	68, 123, 256, 955
BarI	GAAGNNNNNNTAC	2 cut(s)	630, 662
BbsI	GAAGAC	2 cut(s)	147, 629
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	547, 643
BccI	CCATC	3 cut(s)	734, 817, 842
BceAI	ACGGC	1 cut(s)	750
BciT130I	CCWGG	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	97, 791
BfuAI	ACCTGC	1 cut(s)	975
BisI	GCNGC	2 cut(s)	536, 632
BlsI	GCNGC	2 cut(s)	537, 633
Bme1390I	CCNGG	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	1029
BmsI	GCATC	2 cut(s)	115, 430
BmuI	ACTGGG	1 cut(s)	1029
BpiI	GAAGAC	2 cut(s)	147, 629
BpmI	CTGGAG	3 cut(s)	515, 620, 635
BpuEI	CTTGAG	3 cut(s)	347, 430, 830
BsaI	GGTCTC	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	3 cut(s)	471, 603, 1024
Bse3DI	GCAATG	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	653
BseGI	GGATG	3 cut(s)	379, 457, 475
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	3 cut(s)	18, 135, 509
BseNI	ACTGG	3 cut(s)	471, 603, 1024
BseXI	GCAGC	2 cut(s)	547, 643
BsgI	GTGCAG	2 cut(s)	358, 1003
BshFI	GGCC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	97, 791
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	3 cut(s)	19, 134, 508
BspMI	ACCTGC	1 cut(s)	975
BspPI	GGATC	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	863
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	790
BsrI	ACTGG	3 cut(s)	471, 603, 1024
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	696, 729, 759, 927, 939
Bst6I	CTCTTC	3 cut(s)	633, 651, 863
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	5 cut(s)	27, 121, 495, 525, 627
BstENI	CCTNNNNNAGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	379, 457, 475
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	2 cut(s)	97, 791
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	651
BstV1I	GCAGC	2 cut(s)	547, 643
BstV2I	GAAGAC	2 cut(s)	147, 629
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	3 cut(s)	379, 457, 475
BtsIMutI	CAGTG	3 cut(s)	201, 596, 1017
BveI	ACCTGC	1 cut(s)	975
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	723
CseI	GACGC	2 cut(s)	117, 776
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	551, 635
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	5 cut(s)	27, 121, 495, 525, 627
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
DraI	TTTAAA	2 cut(s)	238, 805
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	3 cut(s)	633, 651, 863
EarI	CTCTTC	3 cut(s)	633, 651, 863
Eco31I	GGTCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	651
FaeI	CATG	2 cut(s)	554, 638
FaiI	YATR	7 cut(s)	257, 552, 573, 636, 676, 678, 902
FalI	AAGNNNNNCTT	6 cut(s)	218, 250, 842, 874, 954, 986
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	2 cut(s)	550, 634
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	536, 632
FokI	GGATG	3 cut(s)	386, 464, 482
Fsp4HI	GCNGC	2 cut(s)	536, 632
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	2 cut(s)	536, 632
GsuI	CTGGAG	3 cut(s)	515, 620, 635
HaeIII	GGCC	1 cut(s)	305
HgaI	GACGC	2 cut(s)	117, 776
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	2 cut(s)	554, 638
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HincII	GTYRAC	2 cut(s)	393, 732
HindII	GTYRAC	2 cut(s)	393, 732
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	7 cut(s)	8, 197, 299, 329, 659, 974, 1037
HphI	GGTGA	4 cut(s)	68, 123, 256, 955
Hpy166II	GTNNAC	4 cut(s)	393, 732, 913, 923
Hpy188I	TCNGA	7 cut(s)	28, 49, 100, 124, 244, 562, 1036
Hpy188III	TCNNGA	5 cut(s)	317, 764, 847, 865, 1050
Hpy8I	GTNNAC	4 cut(s)	393, 732, 913, 923
HpyAV	CCTTC	3 cut(s)	44, 139, 844
HpyCH4III	ACNGT	5 cut(s)	696, 729, 759, 927, 939
HpyCH4IV	ACGT	2 cut(s)	152, 214
HpyCH4V	TGCA	4 cut(s)	339, 381, 443, 984
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	5 cut(s)	27, 121, 495, 525, 627
HpySE526I	ACGT	2 cut(s)	152, 214
Hsp92II	CATG	2 cut(s)	554, 638
HspAI	GCGC	1 cut(s)	721
Kzo9I	GATC	1 cut(s)	44
LguI	GCTCTTC	1 cut(s)	863
LmnI	GCTCC	3 cut(s)	534, 601, 1023
Lsp1109I	GCAGC	2 cut(s)	547, 643
LweI	GCATC	2 cut(s)	115, 430
MaeII	ACGT	2 cut(s)	152, 214
MaeIII	GTNAC	6 cut(s)	129, 345, 690, 696, 892, 987
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	7 cut(s)	147, 494, 634, 650, 668, 880, 943
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	7 cut(s)	139, 260, 609, 644, 671, 715, 749
MlyI	GAGTC	2 cut(s)	338, 668
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	5 cut(s)	22, 52, 61, 110, 391
MseI	TTAA	5 cut(s)	237, 368, 518, 584, 804
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	1 cut(s)	535
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	554, 638
NmuCI	GTSAC	4 cut(s)	129, 690, 892, 987
NspI	RCATGY	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	863
PfeI	GAWTC	5 cut(s)	8, 197, 299, 974, 1037
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	537, 633
PleI	GAGTC	2 cut(s)	337, 667
PpsI	GAGTC	2 cut(s)	337, 667
PshBI	ATTAAT	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	863
SaqAI	TTAA	5 cut(s)	237, 368, 518, 584, 804
SatI	GCNGC	2 cut(s)	536, 632
Sau3AI	GATC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	338, 668
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	2 cut(s)	115, 430
SmlI	CTYRAG	3 cut(s)	326, 409, 845
SmoI	CTYRAG	3 cut(s)	326, 409, 845
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	7 cut(s)	139, 260, 609, 644, 671, 715, 749
SsiI	CCGC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	651
TaaI	ACNGT	5 cut(s)	696, 729, 759, 927, 939
TaiI	ACGT	2 cut(s)	155, 217
TaqI	TCGA	1 cut(s)	316
TasI	AATT	7 cut(s)	139, 260, 609, 644, 671, 715, 749
TfiI	GAWTC	5 cut(s)	8, 197, 299, 974, 1037
Tru1I	TTAA	5 cut(s)	237, 368, 518, 584, 804
Tru9I	TTAA	5 cut(s)	237, 368, 518, 584, 804
TscAI	CASTG	3 cut(s)	208, 603, 1024
TseFI	GTSAC	4 cut(s)	129, 690, 892, 987
TseI	GCWGC	2 cut(s)	535, 631
Tsp45I	GTSAC	4 cut(s)	129, 690, 892, 987
TspDTI	ATGAA	7 cut(s)	147, 244, 525, 588, 651, 683, 801
TspRI	CASTG	3 cut(s)	208, 603, 1024
VspI	ATTAAT	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	337
XapI	RAATTY	3 cut(s)	260, 715, 749
XceI	RCATGY	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.