Rorug01G0310700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008794
Physical Location & Seq
Forward (+)
42805749 .. 42806466
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0310700.1

Sequence Viewer

Length: 639 bp
ATGTATGCGGTTCTTCTAGGAGGGACAGATACCTCAACAGTGACATTAACCTGGGCTCTTTCTTTATTACTCAACAATCCTGAAGTCCTGAAGAAGGCTCAACTTGAGTTGGACAACCATGTTGGTAGGGAAAGGCAAGTGAACGAATCAGATGTGAAGAACCTAGTCTATCTCCAAGCCATTATCAAGGAAACCTTGCGGCTATACCCAGCTGCACCTCTCTCAGTACCACATGAATCCAGAGAAGACTGCAGAATAGGTAACTATCATGTAACCTCAGGCACACGTCTTCTTATCAACCTTTCGAAGATTCATCGTGATCCAAATGTCTGGCTCGAGCCTTGTCTATTCCAACCAGAAAGGTTTCTTACAACTCACAAGAATGTTAATGTTAGGGGCCAGAGTTTTGAATTTATACCATTTGGAAGTGGTAGACGAATATGTCCAGGAATATCTCTAGCACTTCAAGTTACTCAACTTACACTGGCTCATTTGCTTCATGGGTTTGAAATTACAGCCCCATCTGATGAACCACTTGATATGGGTGAGAGTTCAGGAATAACAAACATGAAGATAACCCCACTGGAGGTCTTTCTCACCCCACGCCTACATCCTAAACTTTATGAAAATGTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

212

Amino Acids

23.85

Weight (kDa)

6.24

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 188 1.6e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 433
AciI CCGC 2 cut(s) 8, 199
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 2 cut(s) 102, 110
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 94, 586
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 410, 467, 509
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 2 cut(s) 50, 445
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
AlwI GGATC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 557, 589
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 335
AxyI CCTNAGG 1 cut(s) 277
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 2 cut(s) 252, 281
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 2 cut(s) 52, 447
BfaI CTAG 4 cut(s) 17, 164, 458, 637
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 2 cut(s) 200, 213
BlsI GCNGC 2 cut(s) 201, 214
Bme1390I CCNGG 2 cut(s) 52, 447
BmeT110I CYCGRG 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 52, 447
BpiI GAAGAC 2 cut(s) 252, 281
BpmI CTGGAG 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 586
Bse1I ACTGG 2 cut(s) 489, 588
Bse21I CCTNAGG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 52, 447
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 2 cut(s) 94, 586
BseMII CTCAG 2 cut(s) 237, 291
BseNI ACTGG 2 cut(s) 489, 588
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 94, 586
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 399
BsoBI CYCGRG 1 cut(s) 335
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 2 cut(s) 8, 199
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 2 cut(s) 236, 290
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 254
BspPI GGATC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 305
BsrI ACTGG 2 cut(s) 489, 588
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 52, 447
Bst4CI ACNGT 1 cut(s) 40
BstBI TTCGAA 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 223, 277
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 610
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstNI CCWGG 2 cut(s) 52, 447
BstSCI CCNGG 2 cut(s) 50, 445
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 2 cut(s) 252, 281
BstXI CCANNNNNNTGG 1 cut(s) 330
Bsu36I CCTNAGG 1 cut(s) 277
BsuRI GGCC 1 cut(s) 399
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 3 cut(s) 45, 482, 581
Cfr13I GGNCC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 227
CviAII CATG 5 cut(s) 119, 233, 269, 500, 568
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 2 cut(s) 223, 277
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 441
DseDI GACNNNNNNGTC 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 102, 110
Eco81I CCTNAGG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 335
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 50, 445
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 5 cut(s) 122, 236, 272, 503, 571
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 1 cut(s) 37
FatI CATG 5 cut(s) 118, 232, 268, 499, 567
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 200, 213
FokI GGATG 1 cut(s) 597
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 200, 213
FspBI CTAG 4 cut(s) 17, 164, 458, 637
GluI GCNGC 2 cut(s) 200, 213
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 605
HaeIII GGCC 1 cut(s) 399
Hin1II CATG 5 cut(s) 122, 236, 272, 503, 571
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 3 cut(s) 146, 236, 310
HphI GGTGA 2 cut(s) 557, 589
Hpy166II GTNNAC 3 cut(s) 142, 434, 634
Hpy188I TCNGA 2 cut(s) 151, 526
Hpy188III TCNNGA 5 cut(s) 80, 88, 240, 317, 555
Hpy8I GTNNAC 3 cut(s) 142, 434, 634
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 215, 252
HpyF3I CTNAG 2 cut(s) 223, 277
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 5 cut(s) 122, 236, 272, 503, 571
Kzo9I GATC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 4 cut(s) 17, 164, 458, 637
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 4 cut(s) 40, 260, 271, 469
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 7 cut(s) 5, 103, 169, 257, 281, 319, 583
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 410, 510
MmeI TCCRAC 2 cut(s) 90, 376
MnlI CCTC 5 cut(s) 14, 43, 228, 286, 580
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 47, 387
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 52, 447
MvaI CCWGG 2 cut(s) 52, 447
NdeII GATC 1 cut(s) 319
NlaIII CATG 5 cut(s) 122, 236, 272, 503, 571
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 40
NspV TTCGAA 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 146, 236, 310
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 2 cut(s) 201, 214
Psp6I CCWGG 2 cut(s) 50, 445
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 50, 445
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 397
PspXI VCTCGAGB 1 cut(s) 335
PstI CTGCAG 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 2 cut(s) 47, 387
SatI GCNGC 2 cut(s) 200, 213
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 52, 447
SduI GDGCHC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 335
SfuI TTCGAA 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 104, 335
SmoI CTYRAG 2 cut(s) 104, 335
Sse9I AATT 2 cut(s) 410, 510
SsiI CCGC 2 cut(s) 8, 199
SspMI CTAG 4 cut(s) 17, 164, 458, 637
StyD4I CCNGG 2 cut(s) 50, 445
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 305, 336
TasI AATT 2 cut(s) 410, 510
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 3 cut(s) 146, 236, 310
Tru1I TTAA 2 cut(s) 47, 387
Tru9I TTAA 2 cut(s) 47, 387
TscAI CASTG 3 cut(s) 45, 489, 588
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 6 cut(s) 249, 302, 488, 543, 584, 639
TspRI CASTG 3 cut(s) 45, 489, 588
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 17, 164, 458, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.