Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033310.1

Orthogroup ID

OG0008794

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 4659

Gene Structure 4644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033310.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

atggagaacccagaagcaaatcagcttcctgaagtggattcattgccagatggatttgttgagagctcctcagagccactggctcctccaactcccaccttggaacaagagaagcctccgggcaatcacgaggatgataatggctcagagatggatcgttcgaaggagcgtgtcgatgtattgggtgcaaatgagttgcaaacgagccaggataagggagagaagacaccaaagctgagaacctttcctgttccattatcggaaactgatagttttgatgcttcagttgagtcagttgaagttccgaagaaggcttcttcagagcagacagcagaaggttcagtagttctgcctgggtcggctgattctgcgtctgaggctgcaattcaggcatctggttgcagtgaagtaaaggaacaagttgaagcaaaatgtgaaagttcagagagaccaattgaagtaggcttggatgcaccaacaaccaatctaaaggaaatatctgcttcggagagtgttgaaaaaaccaaaaaaccagatacaactgaaaccaaacggaaaaatccaaagcggacctttaaatcagagaaggagtttatagagttcactttgaagtatcaacaagttcttgcagagagagatggagccattgctgttcgagataagcttgagtcgttgtgtagagagttacaacgccagaacaaaatgctaatggatgaatgtagacgggtgtcaacagagggccaaaacttgagattagagttatcaaccaagttccaagatgcaataaaggatgtgagcaaaaagctagatgagcagaaggatgaatgtatctctcagctaaaggagaatgaaatgttaagtaccaaactacagcagctcacccatcagtatgctcattctgaacagcaatatgaaacgaagttgaagcaaaaatcattggagcttcaaattgctgatttgaagattaggcagcatgaagagaaattaatccaggaacagtcccagatgaaattatatgcagaacaggtgtcacaattactatcgactgaaaagaatttgcggttgcagttgacggctgatggggaaaaattccaacaattccaggatgcattgttgaaaagtaatgaagtttttgaaacattcaaacaggagattgaaaagatggcaaagtctatcaaggacctcaagaaggaaaatgtgttcttgaagagcaaatgtgataagacagatgttactcttatagaactcgtagatgaggtatggttggtttcgcttgtcaatctttctttattttgccgtaatcaccaatcaactcctatagaaaactttgtacataactcggcccaaagccccgatcttggtatcaactcctgcaaaacaactcatacgtttttggcatttaagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Taxilin

Protein Analysis

469

Amino Acids

53.0

Weight (kDa)

5.03

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50840 AT5G50840
fragaria_vesca	FvH4_7g19882
malus_domestica	MD01G1111100.v1.1 MD07G1177300.v1.1
prunus_persica	Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1 Prupe.2G216000_v2.0.a1
pyrus_communis	pycom01g13840 pycom07g17130
rosa_chinensis	RchiOBHm_Chr1g0363881
rosa_laevigata	RLG00000027538
rosa_multiflora	Rmu_sc0033310.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292890
rosa_rugosa	Rorug01G0310700
rosa_samantha	Rh1AG318600 Rh1BG281800 Rh1CG298200 Rh1DG313100
rosa_wichuraiana	Rw1G028280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	2 cut(s)	568, 1060
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	1054, 1088
AcuI	CTGAAG	3 cut(s)	51, 267, 303
AfaI	GTAC	2 cut(s)	862, 1332
AfiI	CCNNNNNNNGG	3 cut(s)	214, 1189, 1358
AjnI	CCWGG	4 cut(s)	207, 352, 990, 1101
AloI	GAACNNNNNNTCC	2 cut(s)	1184, 1216
AluBI	AGCT	8 cut(s)	25, 66, 235, 664, 805, 838, 877, 943
AluI	AGCT	8 cut(s)	25, 66, 235, 664, 805, 838, 877, 943
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	739, 1341
ApeKI	GCWGC	3 cut(s)	380, 874, 970
ApoI	RAATTY	2 cut(s)	1054, 1088
AseI	ATTAAT	1 cut(s)	986
AspS9I	GGNCC	4 cut(s)	570, 739, 1180, 1342
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	871, 1295
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	570, 1180
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	367, 886, 982
BccI	CCATC	6 cut(s)	44, 145, 632, 891, 1073, 1156
BceAI	ACGGC	2 cut(s)	1089, 1281
BciT130I	CCWGG	4 cut(s)	209, 354, 992, 1103
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	1 cut(s)	806
BfmI	CTRYAG	2 cut(s)	869, 1317
BisI	GCNGC	3 cut(s)	381, 875, 971
BlsI	GCNGC	3 cut(s)	382, 876, 972
Bme1390I	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
Bme18I	GGWCC	2 cut(s)	570, 1180
BmgT120I	GGNCC	4 cut(s)	570, 739, 1180, 1342
BmiI	GGNNCC	2 cut(s)	84, 643
BmrFI	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
BmsI	GCATC	5 cut(s)	268, 401, 460, 769, 1096
BoxI	GACNNNNGTC	1 cut(s)	727
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu14I	TTCGAA	1 cut(s)	161
BpuEI	CTTGAG	3 cut(s)	686, 769, 1169
BpuMI	CCSGG	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	99, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 1189, 1358
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	2 cut(s)	41, 645
BseBI	CCWGG	4 cut(s)	209, 354, 992, 1103
BseDI	CCNNGG	2 cut(s)	99, 353
BseGI	GGATG	6 cut(s)	139, 475, 718, 796, 826, 1111
BseLI	CCNNNNNNNGG	3 cut(s)	214, 1189, 1358
BseMI	GCAATG	2 cut(s)	41, 645
BseMII	CTCAG	5 cut(s)	84, 159, 227, 366, 848
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	58, 75
BseXI	GCAGC	3 cut(s)	367, 886, 982
BshFI	GGCC	2 cut(s)	741, 1343
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	3 cut(s)	214, 1189, 1358
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	985
BsnI	GGCC	2 cut(s)	741, 1343
Bso31I	GGTCTC	1 cut(s)	442
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	1330
Bsp143I	GATC	2 cut(s)	154, 1354
BspACI	CCGC	2 cut(s)	568, 1060
BspANI	GGCC	2 cut(s)	741, 1343
BspCNI	CTCAG	5 cut(s)	83, 158, 228, 367, 847
BspLI	GGNNCC	2 cut(s)	84, 643
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	1202
BspT104I	TTCGAA	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	442
BsrDI	GCAATG	2 cut(s)	41, 645
BsrGI	TGTACA	1 cut(s)	1330
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	99, 353
BssMI	GATC	2 cut(s)	154, 1354
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	4 cut(s)	209, 354, 992, 1103
Bst4CI	ACNGT	1 cut(s)	999
Bst6I	CTCTTC	2 cut(s)	972, 1202
BstAUI	TGTACA	1 cut(s)	1330
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	5 cut(s)	70, 145, 236, 375, 834
BstENI	CCTNNNNNAGG	1 cut(s)	1187
BstF5I	GGATG	6 cut(s)	139, 475, 718, 796, 826, 1111
BstKTI	GATC	2 cut(s)	157, 1357
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	154, 1354
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 377, 389, 811
BstNI	CCWGG	4 cut(s)	209, 354, 992, 1103
BstPAI	GACNNNNGTC	1 cut(s)	727
BstSCI	CCNGG	5 cut(s)	118, 207, 352, 990, 1101
BstSFI	CTRYAG	2 cut(s)	869, 1317
BstV1I	GCAGC	3 cut(s)	367, 886, 982
BstV2I	GAAGAC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	741, 1343
BtsCI	GGATG	6 cut(s)	139, 475, 718, 796, 826, 1111
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	77, 409
Cfr13I	GGNCC	4 cut(s)	570, 739, 1180, 1342
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	861, 1331
CviAII	CATG	1 cut(s)	974
CviQI	GTAC	2 cut(s)	861, 1331
DdeI	CTNAG	5 cut(s)	70, 145, 236, 375, 834
DpnI	GATC	2 cut(s)	156, 1356
DpnII	GATC	2 cut(s)	154, 1354
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	972, 1202
EarI	CTCTTC	2 cut(s)	972, 1202
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	570, 1180
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	3 cut(s)	51, 267, 303
EcoICRI	GAGCTC	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	1187
EcoO109I	RGGNCCY	1 cut(s)	1180
EcoRII	CCWGG	4 cut(s)	207, 352, 990, 1101
EcoT14I	CCWWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	1111
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	977
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	381, 875, 971
FokI	GGATG	6 cut(s)	146, 482, 725, 803, 833, 1118
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	381, 875, 971
FspBI	CTAG	1 cut(s)	806
GluI	GCNGC	3 cut(s)	381, 875, 971
HaeIII	GGCC	2 cut(s)	741, 1343
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	977
HincII	GTYRAC	2 cut(s)	732, 1071
HindII	GTYRAC	2 cut(s)	732, 1071
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	4 cut(s)	38, 290, 365, 668
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	871, 1295
Hpy166II	GTNNAC	4 cut(s)	603, 722, 732, 1071
Hpy188III	TCNNGA	5 cut(s)	29, 128, 656, 1186, 1204
Hpy8I	GTNNAC	4 cut(s)	603, 722, 732, 1071
HpyAV	CCTTC	6 cut(s)	157, 304, 329, 580, 811, 1183
HpyCH4III	ACNGT	1 cut(s)	999
HpyCH4IV	ACGT	1 cut(s)	1388
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 377, 389, 811
HpyF3I	CTNAG	5 cut(s)	70, 145, 236, 375, 834
HpySE526I	ACGT	1 cut(s)	1388
Hsp92II	CATG	1 cut(s)	977
Kzo9I	GATC	2 cut(s)	154, 1354
LguI	GCTCTTC	1 cut(s)	1202
LmnI	GCTCC	5 cut(s)	71, 88, 166, 641, 940
Lsp1109I	GCAGC	3 cut(s)	367, 886, 982
LweI	GCATC	5 cut(s)	268, 401, 460, 769, 1096
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	1 cut(s)	1388
MaeIII	GTNAC	3 cut(s)	684, 1029, 1231
MalI	GATC	2 cut(s)	156, 1356
MboI	GATC	2 cut(s)	154, 1354
MboII	GAAGA	6 cut(s)	235, 309, 319, 973, 989, 1219
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	9 cut(s)	384, 453, 948, 983, 1010, 1034, 1054, 1088, 1097
MlyI	GAGTC	2 cut(s)	299, 677
MmeI	TCCRAC	2 cut(s)	113, 1117
MnlI	CCTC	8 cut(s)	79, 96, 124, 126, 370, 730, 1193, 1249
Mph1103I	ATGCAT	1 cut(s)	1111
MseI	TTAA	4 cut(s)	576, 857, 986, 1401
MslI	CAYNNNNRTG	2 cut(s)	132, 888
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	4 cut(s)	209, 354, 992, 1103
MwoI	GCNNNNNNNGC	4 cut(s)	368, 377, 389, 811
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	154, 1354
NlaIII	CATG	1 cut(s)	977
NlaIV	GGNNCC	2 cut(s)	84, 643
NmeAIII	GCCGAG	1 cut(s)	1319
NmuCI	GTSAC	1 cut(s)	1029
NsiI	ATGCAT	1 cut(s)	1111
NspV	TTCGAA	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	1202
PfeI	GAWTC	2 cut(s)	38, 365
PfoI	TCCNGGA	2 cut(s)	990, 1101
PkrI	GCNGC	3 cut(s)	382, 876, 972
PleI	GAGTC	2 cut(s)	298, 676
PpsI	GAGTC	2 cut(s)	298, 676
PpuMI	RGGWCCY	1 cut(s)	1180
PshAI	GACNNNNGTC	1 cut(s)	727
PshBI	ATTAAT	1 cut(s)	986
Psp124BI	GAGCTC	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	1180
Psp6I	CCWGG	4 cut(s)	207, 352, 990, 1101
PspGI	CCWGG	4 cut(s)	207, 352, 990, 1101
PspN4I	GGNNCC	2 cut(s)	84, 643
PspPI	GGNCC	4 cut(s)	570, 739, 1180, 1342
PspPPI	RGGWCCY	1 cut(s)	1180
RsaI	GTAC	2 cut(s)	862, 1332
RsaNI	GTAC	2 cut(s)	861, 1331
RseI	CAYNNNNRTG	2 cut(s)	132, 888
SacI	GAGCTC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	1202
SaqAI	TTAA	4 cut(s)	576, 857, 986, 1401
SatI	GCNGC	3 cut(s)	381, 875, 971
Sau3AI	GATC	2 cut(s)	154, 1354
Sau96I	GGNCC	4 cut(s)	570, 739, 1180, 1342
SchI	GAGTC	2 cut(s)	299, 677
ScrFI	CCNGG	5 cut(s)	120, 209, 354, 992, 1103
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	5 cut(s)	268, 401, 460, 769, 1096
SfcI	CTRYAG	2 cut(s)	869, 1317
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	2 cut(s)	570, 1180
SmiMI	CAYNNNNRTG	2 cut(s)	132, 888
SmlI	CTYRAG	3 cut(s)	665, 748, 1184
SmoI	CTYRAG	3 cut(s)	665, 748, 1184
Sse9I	AATT	9 cut(s)	384, 453, 948, 983, 1010, 1034, 1054, 1088, 1097
SsiI	CCGC	2 cut(s)	568, 1060
SspMI	CTAG	1 cut(s)	806
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	5 cut(s)	118, 207, 352, 990, 1101
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	999
TaiI	ACGT	1 cut(s)	1391
TaqI	TCGA	4 cut(s)	161, 174, 655, 1043
TasI	AATT	9 cut(s)	384, 453, 948, 983, 1010, 1034, 1054, 1088, 1097
TatI	WGTACW	1 cut(s)	1330
TfiI	GAWTC	2 cut(s)	38, 365
Tru1I	TTAA	4 cut(s)	576, 857, 986, 1401
Tru9I	TTAA	4 cut(s)	576, 857, 986, 1401
TscAI	CASTG	2 cut(s)	84, 409
TseFI	GTSAC	1 cut(s)	1029
TseI	GCWGC	3 cut(s)	380, 874, 970
Tsp45I	GTSAC	1 cut(s)	1029
TspDTI	ATGAA	8 cut(s)	30, 729, 837, 864, 927, 990, 1022, 1140
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	2 cut(s)	84, 409
VpaK11BI	GGWCC	2 cut(s)	570, 1180
VspI	ATTAAT	1 cut(s)	986
XagI	CCTNNNNNAGG	1 cut(s)	1187
XapI	RAATTY	2 cut(s)	1054, 1088
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.