RchiOBHm_Chr1g0363881

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008794
Physical Location & Seq
Reverse (-)
55190302 .. 55196344
6043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58859

Sequence Viewer

Length: 1404 bp
ATGGAGAACCCAGAAGCAAATCAGCTTCCTGAAGTGGATTCATTGCCAGATGGATTTGTTGAGAGCTCGTCAGAGCCACTGGCTCCTCCAACTCCCAACTTTGAACAAGAGAAGCCTCTGGGCAATCACGAGGATGATAATGGCTCAGAGATGGATCGTTCGAAGGAGCGTGTCGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCAGGATAAGGGAGAGAAGACACCAAAGCTGAGAACCTTTCCTGTTCCATTATCGGAAACTGATAATTTTGATGCTTCAGTTGAGTCAGTTGAAGTTCCAAAGAAGGCTTCTACAGAGCAGACAGCAGAAGGTTCAGTAGTTGTGCCCGGGTCGGCTGATTCTGCGTGTGAGGCTGCAATTCAGGCATCTGGTTGCAGTGAAGTAAAGGAACAAGTTGAAGCAAAATGTGAAAGTTCAGAGAGACCAATTGAAGTAGGCTTGGATGCACCAGCTCCAGCAACCAATCTAAAGGAAATATCTGCTTCGGAGAGTGTTGAAAAAAACAAAAAACCAGATACAACTGAAACCAAACGGAAAAATCCAAAGCGGACCTTTAAATCAGAGAAGGAGTTTATAGAGTTCACTTTGAAGTATCAACAAGTTCTTGCAGAGAGAGATGGAGCCATTGCTGTTCGAGATAAGCTTGAGTCGTTGTGTAGAGAGTTACAACGTCAGAACAAAATGCTAATGGATGAATGTAGACGGGTGTCAACAGAGGGCCAAAACTTGAGATTAGAGTTATCAACCAAGTTCCAAGATGCAATAAAGGATGTGAGCAAAAAGCTAGATGAGCAGAAGGATGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGTACCAAACTACAGCAGCTCACCCATCAGTATGCTCATTCTGAACAGCAATATGAAACGAAGTTGAAGCAAAAATCATTGGAGCTTCAAATTGCTGATTTGAAGATTAGGCAGCATGAAGAGAAATTAATCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAATTACTATCAACTGAAAAGAATTTGCGGTTGCAGTTGACGGCTGATGGGGAGAAATTCCAACAATTCCAGGATGCATTGTTAAAAAGCAATGAAGTTTTCGAAACATTCAAACAGGAGATTGAAAAGATGGCAAAGTCTATCAAGGACCTCAAGAAGGAAAATGTGTTCTTGAAGAGCAAATGTGATAAGACAGATGTTACTCTTATAGAACTCGTAGATGAGCGTGAGCGGTTGAAGAAACAGTTAGAGAAAACAAAGAATCAGAAAGAAAAGCTGGAATCCTTATGCCGGTCACTTCAAGCAGAAAGGAAACAGAACTCTACCGAGGGCAACACCTCCGATGCACTTCCAGTTTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

467

Amino Acids

52.95

Weight (kDa)

5.05

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 176 - 449 6.9e-74 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1270
AccI GTMKAC 1 cut(s) 727
AciI CCGC 3 cut(s) 574, 1066, 1270
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 2 cut(s) 1060, 1094
AcuI CTGAAG 2 cut(s) 51, 267
AfaI GTAC 1 cut(s) 868
AfiI CCNNNNNNNGG 3 cut(s) 214, 1195, 1329
AjnI CCWGG 3 cut(s) 207, 996, 1107
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AloI GAACNNNNNNTCC 2 cut(s) 1190, 1222
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 1 cut(s) 745
ApeKI GCWGC 3 cut(s) 380, 880, 976
ApoI RAATTY 2 cut(s) 1060, 1094
AseI ATTAAT 1 cut(s) 992
AspS9I GGNCC 3 cut(s) 576, 745, 1186
AsuC2I CCSGG 2 cut(s) 354, 355
AsuHPI GGTGA 1 cut(s) 877
AsuII TTCGAA 2 cut(s) 161, 1140
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 2 cut(s) 576, 1186
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 68
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 367, 892, 988
BccI CCATC 6 cut(s) 44, 145, 638, 897, 1079, 1162
BceAI ACGGC 1 cut(s) 1095
BciT130I CCWGG 3 cut(s) 209, 998, 1109
BcnI CCSGG 2 cut(s) 354, 355
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 1 cut(s) 812
BfmI CTRYAG 2 cut(s) 318, 875
BisI GCNGC 3 cut(s) 381, 881, 977
BlsI GCNGC 3 cut(s) 382, 882, 978
Bme1390I CCNGG 5 cut(s) 209, 354, 355, 998, 1109
Bme18I GGWCC 2 cut(s) 576, 1186
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 3 cut(s) 576, 745, 1186
BmiI GGNNCC 2 cut(s) 84, 649
BmrFI CCNGG 5 cut(s) 209, 354, 355, 998, 1109
BmsI GCATC 6 cut(s) 268, 401, 460, 775, 1102, 1372
BoxI GACNNNNGTC 1 cut(s) 733
BpiI GAAGAC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 465
Bpu14I TTCGAA 2 cut(s) 161, 1140
BpuEI CTTGAG 3 cut(s) 692, 775, 1175
BpuMI CCSGG 2 cut(s) 354, 355
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 353, 1365
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 1195, 1329
Bse118I RCCGGY 1 cut(s) 1329
Bse1I ACTGG 2 cut(s) 84, 1391
Bse3DI GCAATG 3 cut(s) 41, 651, 1135
BseBI CCWGG 3 cut(s) 209, 998, 1109
BseDI CCNNGG 2 cut(s) 353, 1365
BseGI GGATG 6 cut(s) 139, 475, 724, 802, 832, 1117
BseLI CCNNNNNNNGG 3 cut(s) 214, 1195, 1329
BseMI GCAATG 3 cut(s) 41, 651, 1135
BseMII CTCAG 3 cut(s) 159, 227, 854
BseNI ACTGG 2 cut(s) 84, 1391
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 3 cut(s) 367, 892, 988
BshFI GGCC 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 2 cut(s) 354, 1330
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 3 cut(s) 214, 1195, 1329
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 1 cut(s) 747
Bso31I GGTCTC 1 cut(s) 442
BsoBI CYCGRG 1 cut(s) 353
Bsp119I TTCGAA 2 cut(s) 161, 1140
Bsp1286I GDGCHC 2 cut(s) 68, 354
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 3 cut(s) 574, 1066, 1270
BspANI GGCC 1 cut(s) 747
BspCNI CTCAG 3 cut(s) 158, 228, 853
BspHI TCATGA 1 cut(s) 1400
BspLI GGNNCC 2 cut(s) 84, 649
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 1208
BspT104I TTCGAA 2 cut(s) 161, 1140
BspTNI GGTCTC 1 cut(s) 442
BsrBI CCGCTC 1 cut(s) 1270
BsrDI GCAATG 3 cut(s) 41, 651, 1135
BsrFI RCCGGY 1 cut(s) 1329
BsrI ACTGG 2 cut(s) 84, 1391
BssAI RCCGGY 1 cut(s) 1329
BssECI CCNNGG 2 cut(s) 353, 1365
BssMI GATC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 209, 998, 1109
Bst4CI ACNGT 2 cut(s) 1005, 1284
Bst6I CTCTTC 2 cut(s) 978, 1208
BstBI TTCGAA 2 cut(s) 161, 1140
BstDEI CTNAG 3 cut(s) 145, 236, 840
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstF5I GGATG 6 cut(s) 139, 475, 724, 802, 832, 1117
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 817
BstNI CCWGG 3 cut(s) 209, 998, 1109
BstPAI GACNNNNGTC 1 cut(s) 733
BstSCI CCNGG 5 cut(s) 207, 352, 353, 996, 1107
BstSFI CTRYAG 2 cut(s) 318, 875
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 367, 892, 988
BstV2I GAAGAC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 747
BtsCI GGATG 6 cut(s) 139, 475, 724, 802, 832, 1117
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 77, 409
CciI TCATGA 1 cut(s) 1400
Cfr10I RCCGGY 1 cut(s) 1329
Cfr13I GGNCC 3 cut(s) 576, 745, 1186
Cfr9I CCCGGG 1 cut(s) 353
Csp6I GTAC 1 cut(s) 867
CviAII CATG 2 cut(s) 980, 1401
CviQI GTAC 1 cut(s) 867
DdeI CTNAG 3 cut(s) 145, 236, 840
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraI TTTAAA 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 978, 1208
EarI CTCTTC 2 cut(s) 978, 1208
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 576, 1186
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 51, 267
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 66
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO109I RGGNCCY 1 cut(s) 1186
EcoRII CCWGG 3 cut(s) 207, 996, 1107
EcoT22I ATGCAT 1 cut(s) 1117
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 2 cut(s) 983, 1404
FaiI YATR 9 cut(s) 602, 897, 918, 981, 1021, 1023, 1247, 1327, 1402
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 991
FatI CATG 2 cut(s) 979, 1400
FblI GTMKAC 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 381, 881, 977
FokI GGATG 6 cut(s) 146, 482, 731, 809, 839, 1124
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 381, 881, 977
FspBI CTAG 1 cut(s) 812
GluI GCNGC 3 cut(s) 381, 881, 977
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 1 cut(s) 747
HapII CCGG 2 cut(s) 354, 1330
Hin1II CATG 2 cut(s) 983, 1404
HincII GTYRAC 2 cut(s) 738, 1077
HindII GTYRAC 2 cut(s) 738, 1077
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 6 cut(s) 38, 290, 365, 674, 1300, 1319
HpaII CCGG 2 cut(s) 354, 1330
HphI GGTGA 1 cut(s) 877
Hpy166II GTNNAC 4 cut(s) 609, 728, 738, 1077
Hpy188III TCNNGA 6 cut(s) 29, 128, 662, 1192, 1210, 1401
Hpy8I GTNNAC 4 cut(s) 609, 728, 738, 1077
HpyAV CCTTC 6 cut(s) 157, 304, 329, 586, 817, 1189
HpyCH4III ACNGT 2 cut(s) 1005, 1284
HpyCH4IV ACGT 1 cut(s) 697
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 817
HpyF3I CTNAG 3 cut(s) 145, 236, 840
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 2 cut(s) 983, 1404
Kzo9I GATC 1 cut(s) 154
LguI GCTCTTC 1 cut(s) 1208
LmnI GCTCC 5 cut(s) 88, 166, 484, 647, 946
Lsp1109I GCAGC 3 cut(s) 367, 892, 988
LweI GCATC 6 cut(s) 268, 401, 460, 775, 1102, 1372
MaeI CTAG 1 cut(s) 812
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 4 cut(s) 690, 1035, 1237, 1332
MalI GATC 1 cut(s) 156
MbiI CCGCTC 1 cut(s) 1270
MboI GATC 1 cut(s) 154
MboII GAAGA 5 cut(s) 235, 979, 995, 1225, 1288
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 68, 354
MlyI GAGTC 2 cut(s) 299, 683
MmeI TCCRAC 2 cut(s) 113, 1123
MnlI CCTC 8 cut(s) 96, 124, 126, 370, 736, 1199, 1360, 1387
Mph1103I ATGCAT 1 cut(s) 1117
MseI TTAA 4 cut(s) 582, 863, 992, 1121
MslI CAYNNNNRTG 2 cut(s) 132, 894
MspI CCGG 2 cut(s) 354, 1330
MspR9I CCNGG 5 cut(s) 209, 354, 355, 998, 1109
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 3 cut(s) 209, 998, 1109
MwoI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 817
NciI CCSGG 2 cut(s) 354, 355
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 983, 1404
NlaIV GGNNCC 2 cut(s) 84, 649
NmuCI GTSAC 2 cut(s) 1035, 1332
NsiI ATGCAT 1 cut(s) 1117
NspV TTCGAA 2 cut(s) 161, 1140
PagI TCATGA 1 cut(s) 1400
PciSI GCTCTTC 1 cut(s) 1208
PfeI GAWTC 4 cut(s) 38, 365, 1300, 1319
PfoI TCCNGGA 2 cut(s) 996, 1107
PkrI GCNGC 3 cut(s) 382, 882, 978
PleI GAGTC 2 cut(s) 298, 682
PpsI GAGTC 2 cut(s) 298, 682
PpuMI RGGWCCY 1 cut(s) 1186
PshAI GACNNNNGTC 1 cut(s) 733
PshBI ATTAAT 1 cut(s) 992
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 1186
Psp6I CCWGG 3 cut(s) 207, 996, 1107
PspGI CCWGG 3 cut(s) 207, 996, 1107
PspN4I GGNNCC 2 cut(s) 84, 649
PspPI GGNCC 3 cut(s) 576, 745, 1186
PspPPI RGGWCCY 1 cut(s) 1186
RsaI GTAC 1 cut(s) 868
RsaNI GTAC 1 cut(s) 867
RseI CAYNNNNRTG 2 cut(s) 132, 894
SacI GAGCTC 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 1208
SaqAI TTAA 4 cut(s) 582, 863, 992, 1121
SatI GCNGC 3 cut(s) 381, 881, 977
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 3 cut(s) 576, 745, 1186
SchI GAGTC 2 cut(s) 299, 683
ScrFI CCNGG 5 cut(s) 209, 354, 355, 998, 1109
SduI GDGCHC 2 cut(s) 68, 354
SfaNI GCATC 6 cut(s) 268, 401, 460, 775, 1102, 1372
SfcI CTRYAG 2 cut(s) 318, 875
SfuI TTCGAA 2 cut(s) 161, 1140
SinI GGWCC 2 cut(s) 576, 1186
SmaI CCCGGG 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 132, 894
SmlI CTYRAG 3 cut(s) 671, 754, 1190
SmoI CTYRAG 3 cut(s) 671, 754, 1190
SsiI CCGC 3 cut(s) 574, 1066, 1270
SspMI CTAG 1 cut(s) 812
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 5 cut(s) 207, 352, 353, 996, 1107
TaaI ACNGT 2 cut(s) 1005, 1284
TaiI ACGT 1 cut(s) 700
TaqI TCGA 4 cut(s) 161, 174, 661, 1140
TfiI GAWTC 4 cut(s) 38, 365, 1300, 1319
Tru1I TTAA 4 cut(s) 582, 863, 992, 1121
Tru9I TTAA 4 cut(s) 582, 863, 992, 1121
TscAI CASTG 2 cut(s) 84, 409
TseFI GTSAC 2 cut(s) 1035, 1332
TseI GCWGC 3 cut(s) 380, 880, 976
Tsp45I GTSAC 2 cut(s) 1035, 1332
TspGWI ACGGA 1 cut(s) 574
TspMI CCCGGG 1 cut(s) 353
TspRI CASTG 2 cut(s) 84, 409
VpaK11BI GGWCC 2 cut(s) 576, 1186
VspI ATTAAT 1 cut(s) 992
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 2 cut(s) 1060, 1094
XmaI CCCGGG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 727
XspI CTAG 1 cut(s) 812
Zsp2I ATGCAT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.