Rh1AG318600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008794
Physical Location & Seq
Reverse (-)
55288175 .. 55293657
5483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG318600.1

Sequence Viewer

Length: 1482 bp
ATGTCGAATAATAGAAATTGTAGGTTGAATACTTGTATCAGAGTTGCACATTTCCCTCCTGATATTACAATCTACCAGGTTAAAATGGAGAACCCAGAAGCAAATCAGCTTCCTGAAGTGGATTCATTGCCAGATGGATTTGTTGAGAGCTCGTCAGAGCCACTGGCTCCTCCAACTCCCACCTTGGAACAAGAGAAGCCTCCGGGCAATCACGAGGATGATAATGGCTCAGAGATGGATCGCTCGAAGGAGCGTGTCGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCAGGATAAGGGAGAGAAGACACCAAAGCTGAGAACCTTTCCTGTTCCATTATCGGAAACTGATAGTTTTGATGCTTCAGTTGAGTCAGTTGAAGTTCCGAAGAAGGCTTCTTCAGAGCAGACAGCAGAAGGTTCAGTAGTTCTGCCTGGGTCGGCTGATTCTGCGTCTGAGGCTGCAATTCAGGCATCTGGTTGCAGTGAAGTAAAGGAACAAGTTGAAGCAAAATGTGAAAGTTCAGAGAGACCAATTGAAGTAGGCTTGGATGCACCAACAACCAATCTAAAGGAAATATCTGCTTCGGAGAGTGTTGAAAAAACCAAAAAACCAGATACAACTGAAACCAAACGGAAAAATCCAAAGCGGACCTTTAAATCAGAGAAGGAGTTTATAGAGTTCACTTTGAAGTATCAACAAGTTCTTGCAGAGAGAGATGGAGCCATTGCTGTTCGAGATAAGCTTGAGTCGTTGTGTAGAGAGTTACAACGCCAGAACAAAATGCTAATGGATGAATGTAGACGGGTGTCAACAGAGGGCCAAAACTTGAGATTAGAGTTATCAACCAAGTTCCAAGATGCAATAAAGGATGTGAGCAAAAAGCTAGATGAGCAGAAGGATGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGTACCAAACTACAGCAGCTCACCCATCAGTATGCTCATTCTGAACAGCAATATGAAACGAAGTTGAAGCAAAAATCATTGGAGCTTCAAATTGCTGATTTGAAGATTAGGCAGCATGAAGAGAAATTAATCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAATTACTATCGACTGAAAAGAATTTGCGGTTGCAGTTGACGGCTGATGGGGAAAAATTCCAACAATTCCAGGATGCATTGTTGAAAAGCAATGAAGTTTTTGAAACATTCAAACAGGAGATTGAAAAGATGGCAAAGTCTATCAAGGACCTCAAGAAGGAAAATGTGTTCTTGAAGAGCAAATGTGATAAGACAGATGTTACTCTTATAGAACTCGTAGATGAGCGTGAGCGGTTGAAGAAACAGTTGGAGAAAACAAAGAATCAGAAAGAAAAGCTCGAATCCTTATGCCGGTCACTTCAAGCAGAAAGGAAACAGAACTCTACCGAGAGCAACACCTCCGATGCACTTCCAGTTTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

493

Amino Acids

56.01

Weight (kDa)

5.19

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 202 - 475 1.7e-74 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1348
AccI GTMKAC 1 cut(s) 805
AciI CCGC 3 cut(s) 652, 1144, 1348
AclWI GGATC 1 cut(s) 246
AcsI RAATTY 2 cut(s) 1138, 1172
AcuI CTGAAG 3 cut(s) 135, 351, 387
AfaI GTAC 1 cut(s) 946
AfiI CCNNNNNNNGG 3 cut(s) 298, 1273, 1407
AjnI CCWGG 5 cut(s) 75, 291, 436, 1074, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 1346, 1378
AloI GAACNNNNNNTCC 2 cut(s) 1268, 1300
AluBI AGCT 9 cut(s) 109, 150, 319, 748, 889, 922, 961, 1027, 1393
AluI AGCT 9 cut(s) 109, 150, 319, 748, 889, 922, 961, 1027, 1393
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 3 cut(s) 464, 958, 1054
ApoI RAATTY 2 cut(s) 1138, 1172
AseI ATTAAT 1 cut(s) 1070
AspS9I GGNCC 3 cut(s) 654, 823, 1264
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 955
AvaII GGWCC 2 cut(s) 654, 1264
BanII GRGCYC 1 cut(s) 152
BauI CACGAG 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 451, 970, 1066
BccI CCATC 6 cut(s) 128, 229, 716, 975, 1157, 1240
BceAI ACGGC 1 cut(s) 1173
BciT130I CCWGG 5 cut(s) 77, 293, 438, 1076, 1187
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 1 cut(s) 890
BfmI CTRYAG 1 cut(s) 953
BisI GCNGC 3 cut(s) 465, 959, 1055
BlsI GCNGC 3 cut(s) 466, 960, 1056
Bme1390I CCNGG 6 cut(s) 77, 204, 293, 438, 1076, 1187
Bme18I GGWCC 2 cut(s) 654, 1264
BmgT120I GGNCC 3 cut(s) 654, 823, 1264
BmiI GGNNCC 2 cut(s) 168, 727
BmrFI CCNGG 6 cut(s) 77, 204, 293, 438, 1076, 1187
BmsI GCATC 6 cut(s) 352, 485, 544, 853, 1180, 1450
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 1 cut(s) 314
BpuEI CTTGAG 3 cut(s) 770, 853, 1253
BpuMI CCSGG 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 183, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 1273, 1407
Bse118I RCCGGY 1 cut(s) 1407
Bse1I ACTGG 2 cut(s) 168, 1469
Bse3DI GCAATG 3 cut(s) 125, 729, 1213
BseBI CCWGG 5 cut(s) 77, 293, 438, 1076, 1187
BseDI CCNNGG 2 cut(s) 183, 437
BseGI GGATG 6 cut(s) 223, 559, 802, 880, 910, 1195
BseLI CCNNNNNNNGG 3 cut(s) 298, 1273, 1407
BseMI GCAATG 3 cut(s) 125, 729, 1213
BseMII CTCAG 4 cut(s) 243, 311, 450, 932
BseNI ACTGG 2 cut(s) 168, 1469
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 451, 970, 1066
BshFI GGCC 1 cut(s) 825
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 203, 1408
BslFI GGGAC 1 cut(s) 1069
BslI CCNNNNNNNGG 3 cut(s) 298, 1273, 1407
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 1069
BsnI GGCC 1 cut(s) 825
Bso31I GGTCTC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 3 cut(s) 652, 1144, 1348
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 4 cut(s) 242, 312, 451, 931
BspHI TCATGA 1 cut(s) 1478
BspLI GGNNCC 2 cut(s) 168, 727
BspPI GGATC 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 1286
BspTNI GGTCTC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 1348
BsrDI GCAATG 3 cut(s) 125, 729, 1213
BsrFI RCCGGY 1 cut(s) 1407
BsrI ACTGG 2 cut(s) 168, 1469
BssAI RCCGGY 1 cut(s) 1407
BssECI CCNNGG 2 cut(s) 183, 437
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 5 cut(s) 77, 293, 438, 1076, 1187
Bst4CI ACNGT 2 cut(s) 1083, 1362
Bst6I CTCTTC 2 cut(s) 1056, 1286
BstDEI CTNAG 4 cut(s) 229, 320, 459, 918
BstENI CCTNNNNNAGG 1 cut(s) 1271
BstF5I GGATG 6 cut(s) 223, 559, 802, 880, 910, 1195
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 4 cut(s) 452, 461, 473, 895
BstNI CCWGG 5 cut(s) 77, 293, 438, 1076, 1187
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 6 cut(s) 75, 202, 291, 436, 1074, 1185
BstSFI CTRYAG 1 cut(s) 953
BstV1I GCAGC 3 cut(s) 451, 970, 1066
BstV2I GAAGAC 1 cut(s) 314
BsuRI GGCC 1 cut(s) 825
BtsCI GGATG 6 cut(s) 223, 559, 802, 880, 910, 1195
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 161, 493
CciI TCATGA 1 cut(s) 1478
Cfr10I RCCGGY 1 cut(s) 1407
Cfr13I GGNCC 3 cut(s) 654, 823, 1264
CseI GACGC 1 cut(s) 444
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 945
CviAII CATG 2 cut(s) 1058, 1479
CviQI GTAC 1 cut(s) 945
DdeI CTNAG 4 cut(s) 229, 320, 459, 918
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DraI TTTAAA 1 cut(s) 661
Eam1104I CTCTTC 2 cut(s) 1056, 1286
EarI CTCTTC 2 cut(s) 1056, 1286
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 654, 1264
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 3 cut(s) 135, 351, 387
EcoICRI GAGCTC 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 1271
EcoO109I RGGNCCY 1 cut(s) 1264
EcoRII CCWGG 5 cut(s) 75, 291, 436, 1074, 1185
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 1195
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 1061, 1482
FaiI YATR 9 cut(s) 680, 975, 996, 1059, 1099, 1101, 1325, 1405, 1480
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 1 cut(s) 1069
FatI CATG 2 cut(s) 1057, 1478
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 3 cut(s) 465, 959, 1055
FokI GGATG 6 cut(s) 230, 566, 809, 887, 917, 1202
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 465, 959, 1055
FspBI CTAG 1 cut(s) 890
GluI GCNGC 3 cut(s) 465, 959, 1055
HaeIII GGCC 1 cut(s) 825
HapII CCGG 2 cut(s) 203, 1408
HgaI GACGC 1 cut(s) 444
Hin1II CATG 2 cut(s) 1061, 1482
HincII GTYRAC 2 cut(s) 816, 1155
HindII GTYRAC 2 cut(s) 816, 1155
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 6 cut(s) 122, 374, 449, 752, 1378, 1397
HpaII CCGG 2 cut(s) 203, 1408
HphI GGTGA 1 cut(s) 955
Hpy166II GTNNAC 4 cut(s) 687, 806, 816, 1155
Hpy188III TCNNGA 7 cut(s) 59, 113, 212, 740, 1270, 1288, 1479
Hpy8I GTNNAC 4 cut(s) 687, 806, 816, 1155
HpyAV CCTTC 6 cut(s) 241, 388, 413, 664, 895, 1267
HpyCH4III ACNGT 2 cut(s) 1083, 1362
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 461, 473, 895
HpyF3I CTNAG 4 cut(s) 229, 320, 459, 918
Hsp92II CATG 2 cut(s) 1061, 1482
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 1286
LmnI GCTCC 4 cut(s) 172, 250, 725, 1024
Lsp1109I GCAGC 3 cut(s) 451, 970, 1066
LweI GCATC 6 cut(s) 352, 485, 544, 853, 1180, 1450
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 1 cut(s) 890
MaeIII GTNAC 4 cut(s) 768, 1113, 1315, 1410
MalI GATC 1 cut(s) 240
MbiI CCGCTC 1 cut(s) 1348
MboI GATC 1 cut(s) 238
MboII GAAGA 7 cut(s) 319, 393, 403, 1057, 1073, 1303, 1366
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 152
MlyI GAGTC 2 cut(s) 383, 761
MmeI TCCRAC 3 cut(s) 197, 1201, 1344
MnlI CCTC 8 cut(s) 66, 180, 208, 210, 454, 814, 1277, 1465
Mph1103I ATGCAT 1 cut(s) 1195
MseI TTAA 4 cut(s) 81, 660, 941, 1070
MslI CAYNNNNRTG 2 cut(s) 216, 972
MspI CCGG 2 cut(s) 203, 1408
MspR9I CCNGG 6 cut(s) 77, 204, 293, 438, 1076, 1187
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 5 cut(s) 77, 293, 438, 1076, 1187
MwoI GCNNNNNNNGC 4 cut(s) 452, 461, 473, 895
NciI CCSGG 1 cut(s) 204
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 1061, 1482
NlaIV GGNNCC 2 cut(s) 168, 727
NmuCI GTSAC 2 cut(s) 1113, 1410
NsiI ATGCAT 1 cut(s) 1195
PagI TCATGA 1 cut(s) 1478
PciSI GCTCTTC 1 cut(s) 1286
PfeI GAWTC 4 cut(s) 122, 449, 1378, 1397
PfoI TCCNGGA 2 cut(s) 1074, 1185
PkrI GCNGC 3 cut(s) 466, 960, 1056
PleI GAGTC 2 cut(s) 382, 760
PpsI GAGTC 2 cut(s) 382, 760
PpuMI RGGWCCY 1 cut(s) 1264
PshAI GACNNNNGTC 1 cut(s) 811
PshBI ATTAAT 1 cut(s) 1070
Psp124BI GAGCTC 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 1264
Psp6I CCWGG 5 cut(s) 75, 291, 436, 1074, 1185
PspGI CCWGG 5 cut(s) 75, 291, 436, 1074, 1185
PspN4I GGNNCC 2 cut(s) 168, 727
PspPI GGNCC 3 cut(s) 654, 823, 1264
PspPPI RGGWCCY 1 cut(s) 1264
RsaI GTAC 1 cut(s) 946
RsaNI GTAC 1 cut(s) 945
RseI CAYNNNNRTG 2 cut(s) 216, 972
SacI GAGCTC 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 1286
SaqAI TTAA 4 cut(s) 81, 660, 941, 1070
SatI GCNGC 3 cut(s) 465, 959, 1055
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 3 cut(s) 654, 823, 1264
SchI GAGTC 2 cut(s) 383, 761
ScrFI CCNGG 6 cut(s) 77, 204, 293, 438, 1076, 1187
SduI GDGCHC 1 cut(s) 152
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 6 cut(s) 352, 485, 544, 853, 1180, 1450
SfcI CTRYAG 1 cut(s) 953
SinI GGWCC 2 cut(s) 654, 1264
SmiMI CAYNNNNRTG 2 cut(s) 216, 972
SmlI CTYRAG 3 cut(s) 749, 832, 1268
SmoI CTYRAG 3 cut(s) 749, 832, 1268
SsiI CCGC 3 cut(s) 652, 1144, 1348
SspMI CTAG 1 cut(s) 890
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 6 cut(s) 75, 202, 291, 436, 1074, 1185
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 1083, 1362
TaqI TCGA 6 cut(s) 5, 245, 258, 739, 1127, 1395
TfiI GAWTC 4 cut(s) 122, 449, 1378, 1397
Tru1I TTAA 4 cut(s) 81, 660, 941, 1070
Tru9I TTAA 4 cut(s) 81, 660, 941, 1070
TscAI CASTG 2 cut(s) 168, 493
TseFI GTSAC 2 cut(s) 1113, 1410
TseI GCWGC 3 cut(s) 464, 958, 1054
Tsp45I GTSAC 2 cut(s) 1113, 1410
TspGWI ACGGA 1 cut(s) 652
TspRI CASTG 2 cut(s) 168, 493
VpaK11BI GGWCC 2 cut(s) 654, 1264
VspI ATTAAT 1 cut(s) 1070
XagI CCTNNNNNAGG 1 cut(s) 1271
XapI RAATTY 2 cut(s) 1138, 1172
XmiI GTMKAC 1 cut(s) 805
XspI CTAG 1 cut(s) 890
Zsp2I ATGCAT 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.