Rroxscaffold_4G00292890

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008794
Physical Location & Seq
Forward (+)
13091725 .. 13097093
5369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292890.1

Sequence Viewer

Length: 1206 bp
ATGGAGAACCCAGAAGCAAATCAGCTTCCTGAAGTGGATTCATTGCCAGATGGATTTGTTGAGAGCTCTACAGAGCCACTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGGGGATGATAATGCCTCAGAGATGGATCGTTCGAAGGAGCGTGTGGATGAATTGGGTGCAAATGAGTTGCAAACGAACCAGGATAAGGGAGAGAAGACACCGAAGCTGAGAACCTTTCCTGTTCCATTATCGGAAACTGATAATTTTGATGCTTCAGTTGAGTCAGTTGAAGTTCCGAAGAAGGCTTCTACAGAGCAGACAGCAGAAGGTTCAGTAGTTGTGCCTGGGTCGGCTGATTCTGCGTCTGAGGCTGCAATTCAGGCATCTGGTTGCAGTGAAGTAAAGGAACAAGTTGAAGCAAAATGTGAAAGTTCAGAGAGACCCATTGCTGTTCGAGATAAGCTTGAGTCGTTGTGTAGAGAGTTACAACGCCAGAACAAAATGCTAATGGATGAATGTCGACAGGTGTCAACAGAGGGCCAAAACTTGAGATTAGAGTTATCAACCAAGTTCCAAGATGCAATAAAGGATGTGAGCAAAAAGCTAGATGAGCAGAAGGATGAATGTATCGCTCAGCTAAAGGAGAATGAAATGTTAAGTACCAAACTACAGCAGCTCACCCATCAGTATGTTCATTCTGAACAGCAATATGAAACGAAGTTGAAGCAAAAATCATTGGAGCTTCAAATTGCTGATTTGAAGATTAGGCAGCATGAAGAGAAATTACTCCAGGAACAGTCCCAGATGAAATTATATGCAGAACAGGTGTCACAATTACTATCAACTGAAAAGAATTTGCGGTTACAGTTGACGGCTGATGGGGAAAAATTCCAACAATTCCAGGATGCATTGTTGAAAAGCAATGAAGTTTTTGAAACATTCAAACAGGAGATTGAAAAGATGGCAAAGTCTATCAAGGACCTCAAGAAGGAAAATGTGTTCTTGAAGAGCAAATGTGATAAGACAGATGTTACTCTTATAGAACTCGTAGATGAGCGTGAGCGGTTGAAGAAACAGTTAGAGAAAACAAAGAATCAGAAAGAAAAGCTCGAATCCTTATGCCGCTCGCTTCAAGCAGAAAGGAAACAGAACTCTACCGAGAGCAACACCTCCGATGCACTTCCAGTTTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

401

Amino Acids

45.47

Weight (kDa)

4.93

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 139 - 383 2.6e-71 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 1072, 1134
AccI GTMKAC 1 cut(s) 529
AciI CCGC 3 cut(s) 868, 1072, 1132
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 2 cut(s) 862, 896
AcuI CTGAAG 2 cut(s) 51, 267
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 214, 997
AjnI CCWGG 4 cut(s) 207, 352, 798, 909
AloI GAACNNNNNNTCC 2 cut(s) 992, 1024
AluBI AGCT 9 cut(s) 25, 66, 235, 472, 613, 646, 685, 751, 1117
AluI AGCT 9 cut(s) 25, 66, 235, 472, 613, 646, 685, 751, 1117
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 3 cut(s) 380, 682, 778
ApoI RAATTY 2 cut(s) 862, 896
AspS9I GGNCC 2 cut(s) 547, 988
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 679
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 988
BanII GRGCYC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 777, 809
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 367, 694, 790
BccI CCATC 5 cut(s) 44, 145, 699, 881, 964
BceAI ACGGC 1 cut(s) 897
BciT130I CCWGG 4 cut(s) 209, 354, 800, 911
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 3 cut(s) 69, 318, 677
BisI GCNGC 4 cut(s) 381, 683, 779, 1132
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 4 cut(s) 382, 684, 780, 1133
Bme1390I CCNGG 5 cut(s) 120, 209, 354, 800, 911
Bme18I GGWCC 1 cut(s) 988
BmgT120I GGNCC 2 cut(s) 547, 988
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 5 cut(s) 120, 209, 354, 800, 911
BmsI GCATC 5 cut(s) 268, 401, 577, 904, 1174
BoxI GACNNNNGTC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 782
Bpu1102I GCTNAGC 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 3 cut(s) 494, 577, 977
BpuMI CCSGG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 997
Bse1I ACTGG 2 cut(s) 84, 1193
Bse3DI GCAATG 3 cut(s) 41, 453, 937
BseBI CCWGG 4 cut(s) 209, 354, 800, 911
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 6 cut(s) 139, 181, 526, 604, 634, 919
BseLI CCNNNNNNNGG 2 cut(s) 214, 997
BseMI GCAATG 3 cut(s) 41, 453, 937
BseMII CTCAG 4 cut(s) 159, 227, 366, 656
BseNI ACTGG 2 cut(s) 84, 1193
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 367, 694, 790
BshFI GGCC 1 cut(s) 549
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 2 cut(s) 214, 997
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 793
BsnI GGCC 1 cut(s) 549
Bso31I GGTCTC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 154
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 3 cut(s) 868, 1072, 1132
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 4 cut(s) 158, 228, 367, 655
BspHI TCATGA 1 cut(s) 1202
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 1010
BspT104I TTCGAA 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 442
BsrBI CCGCTC 2 cut(s) 1072, 1134
BsrDI GCAATG 3 cut(s) 41, 453, 937
BsrI ACTGG 2 cut(s) 84, 1193
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 1 cut(s) 154
Bst2UI CCWGG 4 cut(s) 209, 354, 800, 911
Bst4CI ACNGT 3 cut(s) 807, 876, 1086
Bst6I CTCTTC 2 cut(s) 780, 1010
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 1136
BstDEI CTNAG 4 cut(s) 145, 236, 375, 642
BstENI CCTNNNNNAGG 1 cut(s) 995
BstF5I GGATG 6 cut(s) 139, 181, 526, 604, 634, 919
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 619
BstNI CCWGG 4 cut(s) 209, 354, 800, 911
BstPAI GACNNNNGTC 1 cut(s) 535
BstSCI CCNGG 5 cut(s) 118, 207, 352, 798, 909
BstSFI CTRYAG 3 cut(s) 69, 318, 677
BstV1I GCAGC 3 cut(s) 367, 694, 790
BstV2I GAAGAC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 549
BtsCI GGATG 6 cut(s) 139, 181, 526, 604, 634, 919
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 77, 409
Cac8I GCNNGC 1 cut(s) 1136
CciI TCATGA 1 cut(s) 1202
Cfr13I GGNCC 2 cut(s) 547, 988
CseI GACGC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 669
CviAII CATG 2 cut(s) 782, 1203
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 4 cut(s) 145, 236, 375, 642
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 780, 1010
EarI CTCTTC 2 cut(s) 780, 1010
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 988
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 51, 267
EcoICRI GAGCTC 1 cut(s) 66
EcoNI CCTNNNNNAGG 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 988
EcoRII CCWGG 4 cut(s) 207, 352, 798, 909
EcoT22I ATGCAT 1 cut(s) 919
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 2 cut(s) 785, 1206
FaiI YATR 8 cut(s) 699, 720, 783, 823, 825, 1049, 1129, 1204
FaqI GGGAC 1 cut(s) 793
FatI CATG 2 cut(s) 781, 1202
FblI GTMKAC 1 cut(s) 529
Fnu4HI GCNGC 4 cut(s) 381, 683, 779, 1132
FokI GGATG 6 cut(s) 146, 188, 533, 611, 641, 926
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 4 cut(s) 381, 683, 779, 1132
FspBI CTAG 1 cut(s) 614
GluI GCNGC 4 cut(s) 381, 683, 779, 1132
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 1 cut(s) 549
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 785, 1206
HincII GTYRAC 3 cut(s) 530, 540, 879
HindII GTYRAC 3 cut(s) 530, 540, 879
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 6 cut(s) 38, 290, 365, 476, 1102, 1121
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 679
Hpy166II GTNNAC 3 cut(s) 530, 540, 879
Hpy188I TCNGA 8 cut(s) 148, 262, 306, 376, 445, 709, 1107, 1183
Hpy188III TCNNGA 5 cut(s) 29, 464, 994, 1012, 1203
Hpy8I GTNNAC 3 cut(s) 530, 540, 879
HpyAV CCTTC 5 cut(s) 157, 304, 329, 619, 991
HpyCH4III ACNGT 3 cut(s) 807, 876, 1086
HpyCH4V TGCA 8 cut(s) 188, 199, 383, 402, 590, 827, 917, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 619
HpyF3I CTNAG 4 cut(s) 145, 236, 375, 642
Hsp92II CATG 2 cut(s) 785, 1206
Kzo9I GATC 1 cut(s) 154
LguI GCTCTTC 1 cut(s) 1010
LmnI GCTCC 3 cut(s) 88, 166, 748
Lsp1109I GCAGC 3 cut(s) 367, 694, 790
LweI GCATC 5 cut(s) 268, 401, 577, 904, 1174
MaeI CTAG 1 cut(s) 614
MaeIII GTNAC 4 cut(s) 492, 837, 870, 1039
MalI GATC 1 cut(s) 156
MbiI CCGCTC 2 cut(s) 1072, 1134
MboI GATC 1 cut(s) 154
MboII GAAGA 6 cut(s) 235, 319, 781, 797, 1027, 1090
MhlI GDGCHC 1 cut(s) 68
MlyI GAGTC 2 cut(s) 299, 485
MmeI TCCRAC 2 cut(s) 113, 925
MnlI CCTC 7 cut(s) 96, 126, 154, 370, 538, 1001, 1189
Mph1103I ATGCAT 1 cut(s) 919
MseI TTAA 1 cut(s) 665
MslI CAYNNNNRTG 2 cut(s) 132, 696
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 5 cut(s) 120, 209, 354, 800, 911
MvaI CCWGG 4 cut(s) 209, 354, 800, 911
MwoI GCNNNNNNNGC 4 cut(s) 368, 377, 389, 619
NciI CCSGG 1 cut(s) 120
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 785, 1206
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 837
NsiI ATGCAT 1 cut(s) 919
NspV TTCGAA 1 cut(s) 161
PagI TCATGA 1 cut(s) 1202
PciSI GCTCTTC 1 cut(s) 1010
PfeI GAWTC 4 cut(s) 38, 365, 1102, 1121
PfoI TCCNGGA 2 cut(s) 798, 909
PkrI GCNGC 4 cut(s) 382, 684, 780, 1133
PleI GAGTC 2 cut(s) 298, 484
PpsI GAGTC 2 cut(s) 298, 484
PpuMI RGGWCCY 1 cut(s) 988
PshAI GACNNNNGTC 1 cut(s) 535
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 988
Psp6I CCWGG 4 cut(s) 207, 352, 798, 909
PspGI CCWGG 4 cut(s) 207, 352, 798, 909
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 547, 988
PspPPI RGGWCCY 1 cut(s) 988
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 2 cut(s) 132, 696
SacI GAGCTC 1 cut(s) 68
SalI GTCGAC 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 1010
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 4 cut(s) 381, 683, 779, 1132
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 547, 988
SchI GAGTC 2 cut(s) 299, 485
ScrFI CCNGG 5 cut(s) 120, 209, 354, 800, 911
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 5 cut(s) 268, 401, 577, 904, 1174
SfcI CTRYAG 3 cut(s) 69, 318, 677
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 1 cut(s) 988
SmiMI CAYNNNNRTG 2 cut(s) 132, 696
SmlI CTYRAG 3 cut(s) 473, 556, 992
SmoI CTYRAG 3 cut(s) 473, 556, 992
SsiI CCGC 3 cut(s) 868, 1072, 1132
SspMI CTAG 1 cut(s) 614
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 5 cut(s) 118, 207, 352, 798, 909
TaaI ACNGT 3 cut(s) 807, 876, 1086
TaqI TCGA 4 cut(s) 161, 463, 529, 1119
TauI GCSGC 1 cut(s) 1134
TfiI GAWTC 4 cut(s) 38, 365, 1102, 1121
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TscAI CASTG 2 cut(s) 84, 409
TseFI GTSAC 1 cut(s) 837
TseI GCWGC 3 cut(s) 380, 682, 778
Tsp45I GTSAC 1 cut(s) 837
TspRI CASTG 2 cut(s) 84, 409
VpaK11BI GGWCC 1 cut(s) 988
XagI CCTNNNNNAGG 1 cut(s) 995
XapI RAATTY 2 cut(s) 862, 896
XmiI GTMKAC 1 cut(s) 529
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.