AT5G52790

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007729
Physical Location & Seq
Reverse (-)
21391566 .. 21395016
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52790.3

Sequence Viewer

Length: 1503 bp
ATGGCTGCAAATGATGTCCCTTGCTGTGAGACTATGTTCTGGGTGTACCTACTCGTATGTGTTGCTCTAGTGGTTTTCGCAGGTTTGATGTCAGGACTGACTCTTGGGCTCATGTCCCTTAGTATTGTCGAGCTCGAGGTCATGATCAAAGCCGGTGAACCCCATGACCGCAAAAATGCAGAGAAGATTCTGCCCCTCGTTAAAAACCAGCACCTTCTCTTGTGTACACTCCTTATAGGCAATGCTTTGGCAATGGAGGCTCTACCGATCTTTGTCGATTCCCTGCTTCCAGCCTGGGGTGCTATTCTGATATCCGTCACTCTCATACTTGCCTTTGGCGAGATTATACCTCAAGCTGTATGCTCTAGATACGGACTGAGCATCGGGGCAAAGCTATCATTTTTGGTTCGGTTGATTATTATAGTCTTCTTCCCATTATCTTATCCAATCAGCAAGCTACTCGATTTGTTGCTTGGAAAAAGACATTCCACACTCTTAGGACGAGCAGAGCTCAAGTCACTTGTGTATATGCACGGAAACGAGGCAGGAAAAGGCGGGGAACTAACTCACGATGAAACAACAATCATATCAGGAGCTCTGGACATGTCACAGAAAAGTGCTAAAGACGCAATGACACCAGTCTCTCAGATCTTTTCACTCGATATAAATTTTAAGCTCGACGAAAAGACAATGGGATTAATAGCAAGTGCAGGCCATAGCCGAATACCTATATACTCTGTAAATCCTAATGTTATCATTGGATTTATTCTGGTAAAGAACTTGATCAAAGTCCGTCCTGAAGATGAGACATCGATCAGAGATCTCCCTATCAGAAGAATGCCCAAGGTCGATTTGAATTTACCTCTCTACGACATCCTCAACATCTTCCAAACAGGTCGAAGCCACATGGCTGCTGTCGTTGGGACCAAGAACCACACTAATACCAACACTCCAGTCCATGAAAAGAGCATCAATGGATCGCCTAATAAAGACGCCAACGTTTTTCTGAGTATTCCCGCGTTGAACTCCAGCGAAACTAGTCATCAAAGTCCAATCCGATACATTGATAGTATTTCTGATGAAGATGAAGAAGTCATTGGGATTATAACTCTGGAAGATGTTATGGAGGAACTTATACAGGAAGAAATATATGATGAGACGGACCAGTACGTCGAACTTCATAAAAGGATAACAATAAACATGCCAATGTCGGGAAATTCGCCGGAAACTGCCACTTGGGCTTCGGAGCTGGCATCTCCTATCTCGCCGTATCGCTCAAGTCTTCTGTCGCCGAGCATCATGATCTCTACGCTGCTGCGGTCACCAATAAATTCACCTTACCGTCACTCTCTGTTACTCCGACCAACACTCCACGCTTCTCCACCAGCGCAATCTCCTTCCATACTCTCTCCGGACAGTAATAATGAGCGTTATTATTACTTGTCTCCTAGTAGGGTGTTGAGGAAATCGTATGAAAAGCTATCAAGATCAAATGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

500

Amino Acids

55.13

Weight (kDa)

5.93

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 19 - 190 2.4e-34 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1106
AasI GACNNNNNNGTC 1 cut(s) 1169
Acc36I ACCTGC 1 cut(s) 71
AccII CGCG 1 cut(s) 1019
AccIII TCCGGA 1 cut(s) 1411
AciI CCGC 4 cut(s) 169, 555, 1017, 1318
AclI AACGTT 1 cut(s) 999
AclWI GGATC 1 cut(s) 985
AcsI RAATTY 4 cut(s) 667, 856, 1216, 1330
AcuI CTGAAG 1 cut(s) 819
AcyI GRCGYC 1 cut(s) 993
AfaI GTAC 3 cut(s) 47, 226, 1169
AfiI CCNNNNNNNGG 2 cut(s) 296, 1211
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 2 cut(s) 856, 1024
AhlI ACTAGT 1 cut(s) 1037
AjnI CCWGG 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 1080, 1112
AluBI AGCT 9 cut(s) 133, 356, 394, 457, 511, 596, 676, 1249, 1480
AluI AGCT 9 cut(s) 133, 356, 394, 457, 511, 596, 676, 1249, 1480
Alw21I GWGCWC 3 cut(s) 135, 513, 598
Alw26I GTCTC 5 cut(s) 23, 646, 800, 1151, 1449
AlwI GGATC 1 cut(s) 985
Ama87I CYCGRG 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 1411
AoxI GGCC 1 cut(s) 712
ApeKI GCWGC 4 cut(s) 5, 911, 1312, 1315
ApoI RAATTY 4 cut(s) 667, 856, 1216, 1330
AseI ATTAAT 1 cut(s) 698
AspLEI GCGC 1 cut(s) 1390
AspS9I GGNCC 2 cut(s) 924, 1162
AsuHPI GGTGA 3 cut(s) 167, 1314, 1326
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 2 cut(s) 924, 1162
BanII GRGCYC 4 cut(s) 111, 135, 513, 598
BbsI GAAGAC 2 cut(s) 418, 1274
Bbv12I GWGCWC 3 cut(s) 135, 513, 598
BbvI GCAGC 3 cut(s) 898, 1299, 1302
BceAI ACGGC 1 cut(s) 1252
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 1 cut(s) 295
BclI TGATCA 2 cut(s) 144, 783
BcoDI GTCTC 5 cut(s) 23, 646, 800, 1151, 1449
BcuI ACTAGT 1 cut(s) 1037
BfaI CTAG 4 cut(s) 68, 366, 1038, 1449
BfuAI ACCTGC 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 1238
BglII AGATCT 2 cut(s) 648, 820
BisI GCNGC 4 cut(s) 6, 912, 1313, 1316
BlsI GCNGC 4 cut(s) 7, 913, 1314, 1317
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 2 cut(s) 924, 1162
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 924, 1162
BmiI GGNNCC 2 cut(s) 925, 1498
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 4 cut(s) 390, 978, 1262, 1305
BoxI GACNNNNGTC 1 cut(s) 638
BpiI GAAGAC 2 cut(s) 418, 1274
BplI GAGNNNNNCTC 2 cut(s) 495, 527
BpmI CTGGAG 2 cut(s) 936, 1012
BpuEI CTTGAG 3 cut(s) 336, 497, 1261
Bsa29I ATCGAT 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 993
BsaJI CCNNGG 2 cut(s) 294, 843
BsaWI WCCGGW 1 cut(s) 1411
BsaXI ACNNNNNCTCC 4 cut(s) 934, 964, 1353, 1383
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 1211
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 638, 953, 1165
Bse3DI GCAATG 3 cut(s) 247, 258, 636
BseAI TCCGGA 1 cut(s) 1411
BseBI CCWGG 1 cut(s) 295
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 2 cut(s) 294, 843
BseGI GGATG 1 cut(s) 873
BseLI CCNNNNNNNGG 2 cut(s) 296, 1211
BseMI GCAATG 3 cut(s) 247, 258, 636
BseMII CTCAG 3 cut(s) 368, 659, 998
BseNI ACTGG 3 cut(s) 638, 953, 1165
BseXI GCAGC 3 cut(s) 898, 1299, 1302
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 1019
BshFI GGCC 1 cut(s) 714
BshVI ATCGAT 1 cut(s) 812
BsiHKAI GWGCWC 3 cut(s) 135, 513, 598
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 153, 1223, 1412
BslFI GGGAC 3 cut(s) 2, 100, 937
BslI CCNNNNNNNGG 2 cut(s) 296, 1211
BsmAI GTCTC 5 cut(s) 23, 646, 800, 1151, 1449
BsmBI CGTCTC 1 cut(s) 1151
BsmFI GGGAC 3 cut(s) 2, 100, 937
BsmI GAATGC 1 cut(s) 843
BsnI GGCC 1 cut(s) 714
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 4 cut(s) 111, 135, 513, 598
Bsp13I TCCGGA 1 cut(s) 1411
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
BspACI CCGC 4 cut(s) 169, 555, 1017, 1318
BspANI GGCC 1 cut(s) 714
BspCNI CTCAG 3 cut(s) 369, 658, 999
BspDI ATCGAT 1 cut(s) 812
BspEI TCCGGA 1 cut(s) 1411
BspFNI CGCG 1 cut(s) 1019
BspHI TCATGA 2 cut(s) 141, 1299
BspLI GGNNCC 2 cut(s) 925, 1498
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 985
BsrDI GCAATG 3 cut(s) 247, 258, 636
BsrFI RCCGGY 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 3 cut(s) 638, 953, 1165
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 294, 843
BssMI GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
BssNI GRCGYC 1 cut(s) 993
BssT1I CCWWGG 1 cut(s) 843
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 1343, 1418
BstACI GRCGYC 1 cut(s) 993
BstAUI TGTACA 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 455, 712, 1251
BstDEI CTNAG 5 cut(s) 119, 377, 496, 645, 1007
BstEII GGTNACC 1 cut(s) 1320
BstF5I GGATG 1 cut(s) 873
BstFNI CGCG 1 cut(s) 1019
BstHHI GCGC 1 cut(s) 1390
BstKTI GATC 9 cut(s) 147, 270, 651, 786, 816, 823, 980, 1305, 1490
BstMAI GTCTC 5 cut(s) 23, 646, 800, 1151, 1449
BstMBI GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
BstMWI GCNNNNNNNGC 4 cut(s) 257, 299, 626, 1238
BstNI CCWGG 1 cut(s) 295
BstNSI RCATGY 2 cut(s) 607, 1204
BstPAI GACNNNNGTC 1 cut(s) 638
BstPI GGTNACC 1 cut(s) 1320
BstSCI CCNGG 1 cut(s) 293
BstUI CGCG 1 cut(s) 1019
BstV1I GCAGC 3 cut(s) 898, 1299, 1302
BstV2I GAAGAC 2 cut(s) 418, 1274
BstX2I RGATCY 2 cut(s) 648, 820
BstYI RGATCY 2 cut(s) 648, 820
Bsu15I ATCGAT 1 cut(s) 812
BsuRI GGCC 1 cut(s) 714
BsuTUI ATCGAT 1 cut(s) 812
BtsCI GGATG 1 cut(s) 873
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 455, 712, 1251
CciI TCATGA 2 cut(s) 141, 1299
CfoI GCGC 1 cut(s) 1390
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 924, 1162
ClaI ATCGAT 1 cut(s) 812
CseI GACGC 2 cut(s) 635, 1001
Csp6I GTAC 3 cut(s) 46, 225, 1168
CviAII CATG 8 cut(s) 112, 142, 164, 604, 907, 959, 1201, 1300
CviQI GTAC 3 cut(s) 46, 225, 1168
DdeI CTNAG 5 cut(s) 119, 377, 496, 645, 1007
DpnI GATC 9 cut(s) 146, 269, 650, 785, 815, 822, 979, 1304, 1489
DpnII GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
DrdI GACNNNNNNGTC 1 cut(s) 1169
DseDI GACNNNNNNGTC 1 cut(s) 1169
Ecl136II GAGCTC 3 cut(s) 133, 511, 596
Eco130I CCWWGG 1 cut(s) 843
Eco24I GRGCYC 4 cut(s) 111, 135, 513, 598
Eco32I GATATC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 924, 1162
Eco53kI GAGCTC 3 cut(s) 133, 511, 596
Eco57I CTGAAG 1 cut(s) 819
Eco88I CYCGRG 1 cut(s) 134
Eco91I GGTNACC 1 cut(s) 1320
EcoICRI GAGCTC 3 cut(s) 133, 511, 596
EcoO65I GGTNACC 1 cut(s) 1320
EcoRII CCWGG 1 cut(s) 293
EcoRV GATATC 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 843
EcoT38I GRGCYC 4 cut(s) 111, 135, 513, 598
ErhI CCWWGG 1 cut(s) 843
Esp3I CGTCTC 1 cut(s) 1151
FaeI CATG 8 cut(s) 115, 145, 167, 607, 910, 962, 1204, 1303
FaqI GGGAC 3 cut(s) 2, 100, 937
FatI CATG 8 cut(s) 111, 141, 163, 603, 906, 958, 1200, 1299
FauI CCCGC 2 cut(s) 548, 1024
FbaI TGATCA 2 cut(s) 144, 783
Fnu4HI GCNGC 4 cut(s) 6, 912, 1313, 1316
FokI GGATG 1 cut(s) 860
FriOI GRGCYC 4 cut(s) 111, 135, 513, 598
Fsp4HI GCNGC 4 cut(s) 6, 912, 1313, 1316
FspBI CTAG 4 cut(s) 68, 366, 1038, 1449
GlaI GCGC 1 cut(s) 1389
GluI GCNGC 4 cut(s) 6, 912, 1313, 1316
GsuI CTGGAG 2 cut(s) 936, 1012
HaeIII GGCC 1 cut(s) 714
HapII CCGG 3 cut(s) 153, 1223, 1412
HgaI GACGC 2 cut(s) 635, 1001
HhaI GCGC 1 cut(s) 1390
Hin1I GRCGYC 1 cut(s) 993
Hin1II CATG 8 cut(s) 115, 145, 167, 607, 910, 962, 1204, 1303
Hin6I GCGC 1 cut(s) 1388
HinP1I GCGC 1 cut(s) 1388
HinfI GANTC 3 cut(s) 100, 187, 278
HpaII CCGG 3 cut(s) 153, 1223, 1412
HphI GGTGA 3 cut(s) 167, 1314, 1326
Hpy166II GTNNAC 4 cut(s) 46, 158, 225, 227
Hpy188I TCNGA 9 cut(s) 309, 648, 818, 833, 1008, 1058, 1078, 1246, 1361
Hpy8I GTNNAC 4 cut(s) 46, 158, 225, 227
Hpy99I CGWCG 2 cut(s) 683, 1175
HpyAV CCTTC 2 cut(s) 224, 1407
HpyCH4III ACNGT 2 cut(s) 1343, 1418
HpyCH4IV ACGT 2 cut(s) 999, 1170
HpyCH4V TGCA 4 cut(s) 8, 179, 532, 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 299, 626, 1238
HpyF3I CTNAG 5 cut(s) 119, 377, 496, 645, 1007
HpySE526I ACGT 2 cut(s) 999, 1170
Hsp92I GRCGYC 1 cut(s) 993
Hsp92II CATG 8 cut(s) 115, 145, 167, 607, 910, 962, 1204, 1303
HspAI GCGC 1 cut(s) 1388
Kpn2I TCCGGA 1 cut(s) 1411
Ksp22I TGATCA 2 cut(s) 144, 783
Kzo9I GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
LmnI GCTCC 2 cut(s) 593, 1246
Lsp1109I GCAGC 3 cut(s) 898, 1299, 1302
LweI GCATC 4 cut(s) 390, 978, 1262, 1305
MaeI CTAG 4 cut(s) 68, 366, 1038, 1449
MaeII ACGT 2 cut(s) 999, 1170
MaeIII GTNAC 6 cut(s) 316, 516, 606, 1320, 1343, 1353
MalI GATC 9 cut(s) 146, 269, 650, 785, 815, 822, 979, 1304, 1489
MboI GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
MflI RGATCY 2 cut(s) 648, 820
MhlI GDGCHC 4 cut(s) 111, 135, 513, 598
MluCI AATT 4 cut(s) 667, 856, 1216, 1330
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 1384
MnlI CCTC 9 cut(s) 130, 206, 250, 360, 535, 873, 887, 1120, 1455
MroI TCCGGA 1 cut(s) 1411
MseI TTAA 3 cut(s) 201, 672, 698
MslI CAYNNNNRTG 1 cut(s) 1205
MspI CCGG 3 cut(s) 153, 1223, 1412
MspR9I CCNGG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 843
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 1019
MwoI GCNNNNNNNGC 4 cut(s) 257, 299, 626, 1238
NdeII GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
NlaIII CATG 8 cut(s) 115, 145, 167, 607, 910, 962, 1204, 1303
NlaIV GGNNCC 2 cut(s) 925, 1498
NmeAIII GCCGAG 1 cut(s) 1317
NmuCI GTSAC 5 cut(s) 316, 516, 606, 1320, 1343
NspI RCATGY 2 cut(s) 607, 1204
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 2 cut(s) 141, 1299
PciI ACATGT 1 cut(s) 603
PctI GAATGC 1 cut(s) 843
PfeI GAWTC 2 cut(s) 187, 278
PkrI GCNGC 4 cut(s) 7, 913, 1314, 1317
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PscI ACATGT 1 cut(s) 603
PshAI GACNNNNGTC 1 cut(s) 638
PshBI ATTAAT 1 cut(s) 698
PsiI TTATAA 1 cut(s) 1106
Psp124BI GAGCTC 3 cut(s) 135, 513, 598
Psp1406I AACGTT 1 cut(s) 999
Psp6I CCWGG 1 cut(s) 293
PspEI GGTNACC 1 cut(s) 1320
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 925, 1498
PspPI GGNCC 2 cut(s) 924, 1162
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 2 cut(s) 648, 820
RsaI GTAC 3 cut(s) 47, 226, 1169
RsaNI GTAC 3 cut(s) 46, 225, 1168
RseI CAYNNNNRTG 1 cut(s) 1205
SacI GAGCTC 3 cut(s) 135, 513, 598
SaqAI TTAA 3 cut(s) 201, 672, 698
SatI GCNGC 4 cut(s) 6, 912, 1313, 1316
Sau3AI GATC 9 cut(s) 144, 267, 648, 783, 813, 820, 977, 1302, 1487
Sau96I GGNCC 2 cut(s) 924, 1162
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 4 cut(s) 111, 135, 513, 598
SfaNI GCATC 4 cut(s) 390, 978, 1262, 1305
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 2 cut(s) 924, 1162
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 1205
SmlI CTYRAG 4 cut(s) 134, 351, 512, 1276
SmoI CTYRAG 4 cut(s) 134, 351, 512, 1276
SpeI ACTAGT 1 cut(s) 1037
Sse9I AATT 4 cut(s) 667, 856, 1216, 1330
SsiI CCGC 4 cut(s) 169, 555, 1017, 1318
SspMI CTAG 4 cut(s) 68, 366, 1038, 1449
SstI GAGCTC 3 cut(s) 135, 513, 598
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 843
TaaI ACNGT 2 cut(s) 1343, 1418
TaiI ACGT 2 cut(s) 1002, 1173
TasI AATT 4 cut(s) 667, 856, 1216, 1330
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 2 cut(s) 187, 278
Tru1I TTAA 3 cut(s) 201, 672, 698
Tru9I TTAA 3 cut(s) 201, 672, 698
TseFI GTSAC 5 cut(s) 316, 516, 606, 1320, 1343
TseI GCWGC 4 cut(s) 5, 911, 1312, 1315
Tsp45I GTSAC 5 cut(s) 316, 516, 606, 1320, 1343
TspDTI ATGAA 6 cut(s) 588, 975, 1095, 1101, 1169, 1488
TspGWI ACGGA 5 cut(s) 304, 387, 549, 782, 1175
VpaK11BI GGWCC 2 cut(s) 924, 1162
VspI ATTAAT 1 cut(s) 698
XapI RAATTY 4 cut(s) 667, 856, 1216, 1330
XbaI TCTAGA 1 cut(s) 365
XceI RCATGY 2 cut(s) 607, 1204
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 4 cut(s) 68, 366, 1038, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.