Rw1G037710

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007729
Physical Location & Seq
Reverse (-)
65313601 .. 65317838
4238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037710.1

Sequence Viewer

Length: 1590 bp
ATGAGAGAGGATGATGTTCCGTGTTGCCAGGTCGATTTCTGGGTGTTTATAGTGATTAGCTTGATCCTTGCGTCACTTGCTAGTATTGCATCAGGCCTTGCATTAGGACTCTTGTCCTTCAGCAAAGTTGATCTTGAGGTTCTCATTAGGTCCGGTCAACCCAAAGACCAGAAGAATGCAGCAACGATTCTGCCACTTGTTAAGAATGAGCATCTACTGTTATGTACTCTCCTCATATGCAAATCATTGGCCTTGGAGGCACTTCCCATTTTCGTGGACTCAATTCTCCCAGTTTGGGCTGCCATTCTTGTGTCTGGCACGATTGTAGTTGCAGTTACAGAGATCATTCCTCAAGCTGTATGTTCCCGATATGGACTAAGCCTTGGTGCAAAAGGATCTTACTTGGTTCGATTACTTCTGGTGGTTTTTTTCCCCATAGCATACCCTTTCAGTAAGCTGTTGGATTGCCTCCTTGGAGAAGGGCATTCTGCTCTCCTAAGACGAGCAGAGCTAAAAACATTGGTGGATCTGCATGCAAATGAGGCAGGGATAGGTGGAGAGTTGTCGCATCATGAAACTACAGTTATTGGTGGTGCTTTGGATTTGACGCGAAAGACTGCTGAAGATGCAATGACTCCAATATCAGAAACTTTTTCCCTTGACATAAACTCCAAACTTGACATGAATACACTGGGTTCAATAATGAGCAGAGGTCATAGTCGTATACCAATCTATTCAGGAAACCCAAACAATATCATTGGCCTTATTTTGGCAAAGAATTTGATCTTCTGTCGCCCTGAAGATGAAACCCAGGTTTATGGCAACTGGCCTTTATATGATATCCTGAATCAGTTCCGGAAAGGCTACAGTCACATGGCTGCTGTGGTGAGGAATAAAAAGGACGTTAATGGACAGAAGGAAAAAGATGCTAGGAGTTCAAGATTAGATTCAACACGAGCGGAGAGCAAAGGGTTAATGTTGCACAGATATTACAGGTTTAAATTCTCCGATCAATGGGAAAGAGCATCTGATACTGATACAGAATACTGCACTCCGCTATCAGAGCATGTCATGGAGCAAGATGAAGATCTTAAGCAGATGCAAAACAAGCGCCATAAAAAGCAGGGAGGTGGAAATGTATCAAATGAAAGTGTAGGATCTATTCAAAGTCACTTGGACGAGGAGGTAATTGGTATCATAACAATGGAGGATGTTATGGAGGAACTGCTACAGGAAGACATACTGGATGAAACAGATGAGTATGTGGATGTGCATAACAATTTGTTTTCTCTTAATCTATTTCAGAATCAAATCAACCTGCTACCTTCAAGAAGATCATCACCCTCAAAATCTCCTAGAACAAAGTCTCTATCTCAAATTTATTGGAGAACTCCGGAGCCCTCTCCCCTGCCTTCGAAATACAATAGTCCTATACTCCGTTCTCCCATTAATCCCGCATACATTCAACCACCTCCTTTCCTCATCACCAGACCTACTTTGTATCCTTCCCCTGCTAAATCATTACTCAATATCAGTTCTCCACAAGCTGGACCATTTGTTGTGATAGATAGAAATATGCCCACTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

529

Amino Acids

58.91

Weight (kDa)

5.94

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 19 - 186 1.1e-25 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1326
AccB7I CCANNNNNTGG 1 cut(s) 1547
AccBSI CCGCTC 1 cut(s) 959
AccI GTMKAC 1 cut(s) 724
AccII CGCG 1 cut(s) 610
AccIII TCCGGA 2 cut(s) 855, 1393
AciI CCGC 3 cut(s) 959, 1055, 1455
AclWI GGATC 4 cut(s) 58, 403, 534, 1165
AcsI RAATTY 3 cut(s) 778, 1001, 1377
AcuI CTGAAG 3 cut(s) 103, 642, 819
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 4 cut(s) 295, 769, 1014, 1547
AflII CTTAAG 1 cut(s) 1091
AgsI TTSAA 6 cut(s) 699, 939, 951, 1166, 1329, 1466
AjnI CCWGG 2 cut(s) 27, 810
AluBI AGCT 5 cut(s) 60, 356, 457, 511, 1547
AluI AGCT 5 cut(s) 60, 356, 457, 511, 1547
Alw26I GTCTC 1 cut(s) 1371
AlwI GGATC 4 cut(s) 58, 403, 534, 1165
Aor13HI TCCGGA 2 cut(s) 855, 1393
AoxI GGCC 4 cut(s) 94, 249, 760, 827
ApeKI GCWGC 3 cut(s) 179, 299, 878
ApoI RAATTY 3 cut(s) 778, 1001, 1377
AseI ATTAAT 1 cut(s) 1449
Asp700I GAANNNNTTC 1 cut(s) 851
AspLEI GCGC 1 cut(s) 1113
AspS9I GGNCC 2 cut(s) 150, 1550
AsuHPI GGTGA 3 cut(s) 898, 1332, 1477
AsuII TTCGAA 1 cut(s) 1415
AvaII GGWCC 2 cut(s) 150, 1550
BanII GRGCYC 1 cut(s) 1401
BauI CACGAG 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 1242
BbvI GCAGC 3 cut(s) 191, 286, 865
BciT130I CCWGG 2 cut(s) 29, 812
BciVI GTATCC 1 cut(s) 1512
BcoDI GTCTC 1 cut(s) 1371
BfaI CTAG 3 cut(s) 81, 930, 1356
BfmI CTRYAG 3 cut(s) 579, 865, 1229
BfoI RGCGCY 1 cut(s) 1114
BfrI CTTAAG 1 cut(s) 1091
BfuAI ACCTGC 1 cut(s) 1326
BfuI GTATCC 1 cut(s) 1512
BglI GCCNNNNNGGC 1 cut(s) 257
BglII AGATCT 1 cut(s) 1087
BisI GCNGC 3 cut(s) 180, 300, 879
BlsI GCNGC 3 cut(s) 181, 301, 880
Bme1390I CCNGG 2 cut(s) 29, 812
Bme18I GGWCC 2 cut(s) 150, 1550
BmgT120I GGNCC 2 cut(s) 150, 1550
BmiI GGNNCC 1 cut(s) 1398
BmrFI CCNGG 2 cut(s) 29, 812
BmrI ACTGGG 2 cut(s) 284, 701
BmsI GCATC 7 cut(s) 98, 220, 577, 616, 916, 1034, 1089
BmuI ACTGGG 2 cut(s) 284, 701
BoxI GACNNNNGTC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 1242
Bpu14I TTCGAA 1 cut(s) 1415
BpuEI CTTGAG 2 cut(s) 155, 336
BsaBI GATNNNNATC 1 cut(s) 1086
BsaJI CCNNGG 4 cut(s) 252, 382, 472, 810
BsaWI WCCGGW 3 cut(s) 152, 855, 1393
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 769, 1014, 1547
Bse1I ACTGG 4 cut(s) 290, 696, 830, 1248
Bse3DI GCAATG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 1086
BseAI TCCGGA 2 cut(s) 855, 1393
BseBI CCWGG 2 cut(s) 29, 812
BseDI CCNNGG 4 cut(s) 252, 382, 472, 810
BseGI GGATG 4 cut(s) 16, 1216, 1252, 1273
BseJI GATNNNNATC 1 cut(s) 1086
BseLI CCNNNNNNNGG 4 cut(s) 295, 769, 1014, 1547
BseMI GCAATG 1 cut(s) 636
BseNI ACTGG 4 cut(s) 290, 696, 830, 1248
BseRI GAGGAG 2 cut(s) 221, 1196
BseXI GCAGC 3 cut(s) 191, 286, 865
BsgI GTGCAG 1 cut(s) 1033
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 4 cut(s) 96, 251, 762, 829
BsiSI CCGG 3 cut(s) 153, 856, 1394
BslI CCNNNNNNNGG 4 cut(s) 295, 769, 1014, 1547
BsmAI GTCTC 1 cut(s) 1371
BsmI GAATGC 2 cut(s) 181, 484
BsnI GGCC 4 cut(s) 96, 251, 762, 829
Bsp119I TTCGAA 1 cut(s) 1415
Bsp1286I GDGCHC 1 cut(s) 1401
Bsp13I TCCGGA 2 cut(s) 855, 1393
BspACI CCGC 3 cut(s) 959, 1055, 1455
BspANI GGCC 4 cut(s) 96, 251, 762, 829
BspEI TCCGGA 2 cut(s) 855, 1393
BspFNI CGCG 1 cut(s) 610
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 1398
BspMI ACCTGC 1 cut(s) 1326
BspPI GGATC 4 cut(s) 58, 403, 534, 1165
BspT104I TTCGAA 1 cut(s) 1415
BspTI CTTAAG 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 959
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 4 cut(s) 290, 696, 830, 1248
BssECI CCNNGG 4 cut(s) 252, 382, 472, 810
BssNAI GTATAC 1 cut(s) 725
BssSI CACGAG 1 cut(s) 954
BssT1I CCWWGG 3 cut(s) 252, 382, 472
Bst1107I GTATAC 1 cut(s) 725
Bst2BI CACGAG 1 cut(s) 954
Bst2UI CCWGG 2 cut(s) 29, 812
Bst4CI ACNGT 3 cut(s) 219, 583, 869
BstAFI CTTAAG 1 cut(s) 1091
BstBI TTCGAA 1 cut(s) 1415
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 377, 497
BstF5I GGATG 4 cut(s) 16, 1216, 1252, 1273
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 1114
BstHHI GCGC 1 cut(s) 1113
BstMAI GTCTC 1 cut(s) 1371
BstMWI GCNNNNNNNGC 7 cut(s) 77, 86, 257, 542, 626, 1063, 1108
BstNI CCWGG 2 cut(s) 29, 812
BstNSI RCATGY 2 cut(s) 536, 1070
BstPAI GACNNNNGTC 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 27, 810
BstSFI CTRYAG 3 cut(s) 579, 865, 1229
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 3 cut(s) 191, 286, 865
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 4 cut(s) 395, 526, 1087, 1157
BstXI CCANNNNNNTGG 2 cut(s) 274, 818
BstYI RGATCY 4 cut(s) 395, 526, 1087, 1157
BstZ17I GTATAC 1 cut(s) 725
BsuI GTATCC 1 cut(s) 1512
BsuRI GGCC 4 cut(s) 96, 251, 762, 829
BtsCI GGATG 4 cut(s) 16, 1216, 1252, 1273
BtsIMutI CAGTG 1 cut(s) 689
BveI ACCTGC 1 cut(s) 1326
Cac8I GCNNGC 1 cut(s) 534
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 1113
Cfr13I GGNCC 2 cut(s) 150, 1550
CseI GACGC 2 cut(s) 60, 616
Csp6I GTAC 1 cut(s) 225
CviAII CATG 6 cut(s) 533, 572, 682, 874, 1067, 1072
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 2 cut(s) 377, 497
DraI TTTAAA 1 cut(s) 1000
Eco130I CCWWGG 3 cut(s) 252, 382, 472
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 1401
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 2 cut(s) 150, 1550
Eco57I CTGAAG 3 cut(s) 103, 642, 819
EcoRII CCWGG 2 cut(s) 27, 810
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 3 cut(s) 252, 382, 472
EcoT38I GRGCYC 1 cut(s) 1401
ErhI CCWWGG 3 cut(s) 252, 382, 472
FaeI CATG 6 cut(s) 536, 575, 685, 877, 1070, 1075
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 6 cut(s) 532, 571, 681, 873, 1066, 1071
FauI CCCGC 1 cut(s) 1462
FauNDI CATATG 1 cut(s) 236
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 3 cut(s) 180, 300, 879
FokI GGATG 4 cut(s) 23, 1223, 1259, 1280
FriOI GRGCYC 1 cut(s) 1401
Fsp4HI GCNGC 3 cut(s) 180, 300, 879
FspBI CTAG 3 cut(s) 81, 930, 1356
GlaI GCGC 1 cut(s) 1112
GluI GCNGC 3 cut(s) 180, 300, 879
HaeII RGCGCY 1 cut(s) 1114
HaeIII GGCC 4 cut(s) 96, 251, 762, 829
HapII CCGG 3 cut(s) 153, 856, 1394
HgaI GACGC 2 cut(s) 60, 616
HhaI GCGC 1 cut(s) 1113
Hin1II CATG 6 cut(s) 536, 575, 685, 877, 1070, 1075
Hin6I GCGC 1 cut(s) 1111
HinP1I GCGC 1 cut(s) 1111
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 7 cut(s) 108, 187, 278, 634, 847, 947, 1306
HpaII CCGG 3 cut(s) 153, 856, 1394
HphI GGTGA 3 cut(s) 898, 1332, 1477
Hpy166II GTNNAC 3 cut(s) 158, 277, 725
Hpy188I TCNGA 5 cut(s) 646, 1009, 1030, 1063, 1305
Hpy188III TCNNGA 9 cut(s) 134, 366, 572, 738, 844, 856, 939, 1329, 1394
Hpy8I GTNNAC 3 cut(s) 158, 277, 725
HpyAV CCTTC 6 cut(s) 127, 473, 910, 1335, 1422, 1515
HpyCH4III ACNGT 3 cut(s) 219, 583, 869
HpyCH4IV ACGT 1 cut(s) 903
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 86, 257, 542, 626, 1063, 1108
HpyF3I CTNAG 2 cut(s) 377, 497
HpySE526I ACGT 1 cut(s) 903
Hsp92II CATG 6 cut(s) 536, 575, 685, 877, 1070, 1075
HspAI GCGC 1 cut(s) 1111
Kpn2I TCCGGA 2 cut(s) 855, 1393
LmnI GCTCC 2 cut(s) 1075, 1396
Lsp1109I GCAGC 3 cut(s) 191, 286, 865
LweI GCATC 7 cut(s) 98, 220, 577, 616, 916, 1034, 1089
MaeI CTAG 3 cut(s) 81, 930, 1356
MaeII ACGT 1 cut(s) 903
MaeIII GTNAC 4 cut(s) 72, 334, 869, 1169
MbiI CCGCTC 1 cut(s) 959
MboII GAAGA 7 cut(s) 184, 635, 778, 812, 1097, 1247, 1344
MflI RGATCY 4 cut(s) 395, 526, 1087, 1157
MhlI GDGCHC 1 cut(s) 1401
MluCI AATT 6 cut(s) 282, 778, 1001, 1188, 1279, 1377
MlyI GAGTC 3 cut(s) 102, 272, 628
MmeI TCCRAC 1 cut(s) 441
MroI TCCGGA 2 cut(s) 855, 1393
MroXI GAANNNNTTC 1 cut(s) 851
MseI TTAA 7 cut(s) 201, 906, 974, 999, 1092, 1293, 1449
MslI CAYNNNNRTG 4 cut(s) 272, 308, 537, 1202
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 3 cut(s) 153, 856, 1394
MspR9I CCNGG 2 cut(s) 29, 812
Mva1269I GAATGC 2 cut(s) 181, 484
MvaI CCWGG 2 cut(s) 29, 812
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 7 cut(s) 77, 86, 257, 542, 626, 1063, 1108
NdeI CATATG 1 cut(s) 236
NlaIII CATG 6 cut(s) 536, 575, 685, 877, 1070, 1075
NlaIV GGNNCC 1 cut(s) 1398
NmuCI GTSAC 3 cut(s) 72, 869, 1169
NspI RCATGY 2 cut(s) 536, 1070
NspV TTCGAA 1 cut(s) 1415
PaeI GCATGC 1 cut(s) 536
PagI TCATGA 1 cut(s) 571
PceI AGGCCT 1 cut(s) 96
PctI GAATGC 2 cut(s) 181, 484
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 4 cut(s) 187, 847, 947, 1306
PflMI CCANNNNNTGG 1 cut(s) 1547
PkrI GCNGC 3 cut(s) 181, 301, 880
PleI GAGTC 3 cut(s) 102, 272, 628
PpsI GAGTC 3 cut(s) 102, 272, 628
PshAI GACNNNNGTC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 1449
Psp6I CCWGG 2 cut(s) 27, 810
PspGI CCWGG 2 cut(s) 27, 810
PspN4I GGNNCC 1 cut(s) 1398
PspPI GGNCC 2 cut(s) 150, 1550
PsuI RGATCY 4 cut(s) 395, 526, 1087, 1157
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 4 cut(s) 272, 308, 537, 1202
SaqAI TTAA 7 cut(s) 201, 906, 974, 999, 1092, 1293, 1449
SatI GCNGC 3 cut(s) 180, 300, 879
Sau96I GGNCC 2 cut(s) 150, 1550
SchI GAGTC 3 cut(s) 102, 272, 628
ScrFI CCNGG 2 cut(s) 29, 812
SduI GDGCHC 1 cut(s) 1401
SfaNI GCATC 7 cut(s) 98, 220, 577, 616, 916, 1034, 1089
SfcI CTRYAG 3 cut(s) 579, 865, 1229
SfuI TTCGAA 1 cut(s) 1415
SinI GGWCC 2 cut(s) 150, 1550
SmiMI CAYNNNNRTG 4 cut(s) 272, 308, 537, 1202
SmlI CTYRAG 3 cut(s) 134, 351, 1091
SmoI CTYRAG 3 cut(s) 134, 351, 1091
SphI GCATGC 1 cut(s) 536
Sse9I AATT 6 cut(s) 282, 778, 1001, 1188, 1279, 1377
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 3 cut(s) 959, 1055, 1455
SspMI CTAG 3 cut(s) 81, 930, 1356
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 27, 810
StyI CCWWGG 3 cut(s) 252, 382, 472
TaaI ACNGT 3 cut(s) 219, 583, 869
TaiI ACGT 1 cut(s) 906
TaqI TCGA 3 cut(s) 33, 409, 1415
TasI AATT 6 cut(s) 282, 778, 1001, 1188, 1279, 1377
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 4 cut(s) 187, 847, 947, 1306
Tru1I TTAA 7 cut(s) 201, 906, 974, 999, 1092, 1293, 1449
Tru9I TTAA 7 cut(s) 201, 906, 974, 999, 1092, 1293, 1449
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 3 cut(s) 72, 869, 1169
TseI GCWGC 3 cut(s) 179, 299, 878
Tsp45I GTSAC 3 cut(s) 72, 869, 1169
TspDTI ATGAA 6 cut(s) 588, 698, 819, 1098, 1161, 1263
TspGWI ACGGA 2 cut(s) 9, 1427
TspRI CASTG 1 cut(s) 696
Van91I CCANNNNNTGG 1 cut(s) 1547
Vha464I CTTAAG 1 cut(s) 1091
VpaK11BI GGWCC 2 cut(s) 150, 1550
VspI ATTAAT 1 cut(s) 1449
XapI RAATTY 3 cut(s) 778, 1001, 1377
XceI RCATGY 2 cut(s) 536, 1070
XmiI GTMKAC 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 3 cut(s) 81, 930, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.