Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007729

Physical Location & Seq

Genomic Coordinates Reverse (-)

63429639 .. 63431446

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG419400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGACTCCAATATCAGAAACTTTTTCCCTTGACATAAACTCCAAACTTGACATGAATACACTGGGTTCAATAATGAGCAGAGGTCATAGTCGTATACCAATCTATTCAGGAAACCCAAACAATATCATTGGCCTTATTTTGGCAAAGAATTTGATCTTCTGTCGCCCTGAAGATGAAACCCCAGTTAAGTACATGACAATCAGAAAAATTCCAAGGGTTTATGGCAACTGGCCTTTATATGATATCCTGAATCAGTTCCGGAAAGGCTACAGTCACATGGCTGCTGTGGTGAGGAATAAAAAGGACGTTAATGGACAGAAGGAAAAAGATGCTAGGAGTTCAAGATTAGATTCAACACGAGCGGAGAGCAAAGGTTTAAATTCTCCGATCAATGGGAAAGAGCATCTGAGTAACACCATAGACACATCCCCTGTGTACTCGAGTACTGATACAGAATATTGCACTCCGCTATCAGAGCATGTCATGGAGCAAGATGAAGATCTTAAGCAGATGCATAACAAGCGCCATAAAAAGCAGGGAGGTGGAAATGTATCAAATGAAAGTGTAGGAAGTCACTTGGACGAGGAGGTAATTGGTATCATAACAATGGAGGATGTTATGGAGGAACTGCTACAGGAAGACATACTGGATGAAACAGATGAGTATGTGGATGTGCATAAAAAAATCAAAATCAACCTGCTGCCTTCAAGAAGATCATCACCCTCAAAATCTCCTATAACAAAGTCTCTATCTCAAATTTATTGGAGAACTCCGGAGCCCTCTCCCCTGCCTTCGAAATACAATAGTCCTATACTCCGTTCTCCCATTAATCCCGCATACATTCAACCACCTCCTTTCCTCATCACCAGACCTACTTTGTATCCTTCCCCTGCTAAATCATTACTCAATATCAGTTCTCCACAAGCTGGACCATTTGCAGGTCCTATTCGCGCCTCACCGTCCTCACATCGAGCCTCAAGAAAGTCATATGAGAAGCTACGACAATCCAGTGGACGTAAACCTACAAGAAGCTACTCGCTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

348

Amino Acids

39.12

Weight (kDa)

9.31

Isoelectric Point (pI)

70.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52790 AT5G52790 AT5G52790 AT5G52790 AT5G52790
fragaria_vesca	FvH4_2g02720 FvH4_7g30340 FvH4_7g30360
malus_domestica	MD01G1209400.v1.1 MD07G1279700.v1.1
prunus_persica	Prupe.2G301800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378481
rosa_laevigata	RLG00000026433
rosa_multiflora	Rmu_sc0003562.1_g000007 Rmu_sc0008712.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280430
rosa_rugosa	Rorug01G0409200 Rorug01G0409300
rosa_samantha	Rh1AG430500 Rh1BG388400 Rh1CG401800 Rh1DG419400 Rh1DG419500
rosa_wichuraiana	Rw1G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	705, 929
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccBSI	CCGCTC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	94
AccII	CGCG	1 cut(s)	951
AccIII	TCCGGA	2 cut(s)	258, 772
AciI	CCGC	3 cut(s)	362, 467, 834
AcsI	RAATTY	4 cut(s)	148, 207, 379, 756
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	3 cut(s)	191, 437, 445
AfiI	CCNNNNNNNGG	4 cut(s)	139, 392, 926, 938
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	69, 342, 354, 708, 845
AluBI	AGCT	3 cut(s)	926, 997, 1032
AluI	AGCT	3 cut(s)	926, 997, 1032
Alw26I	GTCTC	1 cut(s)	750
Ama87I	CYCGRG	1 cut(s)	439
Aor13HI	TCCGGA	2 cut(s)	258, 772
AoxI	GGCC	2 cut(s)	130, 230
ApeKI	GCWGC	2 cut(s)	281, 700
ApoI	RAATTY	4 cut(s)	148, 207, 379, 756
AseI	ATTAAT	1 cut(s)	828
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	525, 953
AspS9I	GGNCC	2 cut(s)	929, 941
AsuHPI	GGTGA	4 cut(s)	301, 711, 856, 948
AsuII	TTCGAA	1 cut(s)	794
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	929, 941
BanII	GRGCYC	1 cut(s)	780
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	268, 687
BciVI	GTATCC	1 cut(s)	891
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	268, 632
BfoI	RGCGCY	1 cut(s)	526
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	2 cut(s)	705, 929
BfuI	GTATCC	1 cut(s)	891
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	2 cut(s)	282, 701
BlsI	GCNGC	2 cut(s)	283, 702
BmcAI	AGTACT	1 cut(s)	445
Bme18I	GGWCC	2 cut(s)	929, 941
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	929, 941
BmiI	GGNNCC	1 cut(s)	777
BmrI	ACTGGG	2 cut(s)	71, 176
BmsI	GCATC	3 cut(s)	319, 412, 501
BmuI	ACTGGG	2 cut(s)	71, 176
BpiI	GAAGAC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	794
BpuEI	CTTGAG	1 cut(s)	961
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	2 cut(s)	258, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 392, 926, 938
Bse1I	ACTGG	5 cut(s)	66, 182, 233, 651, 1008
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	2 cut(s)	258, 772
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	4 cut(s)	425, 619, 655, 676
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	4 cut(s)	139, 392, 926, 938
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	5 cut(s)	66, 182, 233, 651, 1008
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	2 cut(s)	268, 687
Bsh1236I	CGCG	1 cut(s)	951
BshFI	GGCC	2 cut(s)	132, 232
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	2 cut(s)	259, 773
BslI	CCNNNNNNNGG	4 cut(s)	139, 392, 926, 938
BsmAI	GTCTC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	132, 232
BsoBI	CYCGRG	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp13I	TCCGGA	2 cut(s)	258, 772
Bsp143I	GATC	4 cut(s)	153, 387, 499, 713
BspACI	CCGC	3 cut(s)	362, 467, 834
BspANI	GGCC	2 cut(s)	132, 232
BspCNI	CTCAG	1 cut(s)	399
BspEI	TCCGGA	2 cut(s)	258, 772
BspFNI	CGCG	1 cut(s)	951
BspLI	GGNNCC	1 cut(s)	777
BspMI	ACCTGC	2 cut(s)	705, 929
BspT104I	TTCGAA	1 cut(s)	794
BspTI	CTTAAG	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	362
BsrI	ACTGG	5 cut(s)	66, 182, 233, 651, 1008
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	153, 387, 499, 713
BssNAI	GTATAC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	212
Bst1107I	GTATAC	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	272, 960
BstAFI	CTTAAG	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	794
BstDEI	CTNAG	2 cut(s)	407, 1040
BstF5I	GGATG	4 cut(s)	425, 619, 655, 676
BstFNI	CGCG	1 cut(s)	951
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	525, 953
BstKTI	GATC	4 cut(s)	156, 390, 502, 716
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	4 cut(s)	153, 387, 499, 713
BstMWI	GCNNNNNNNGC	2 cut(s)	475, 520
BstNSI	RCATGY	1 cut(s)	482
BstSFI	CTRYAG	2 cut(s)	268, 632
BstUI	CGCG	1 cut(s)	951
BstV1I	GCAGC	2 cut(s)	268, 687
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BstZ17I	GTATAC	1 cut(s)	95
BsuI	GTATCC	1 cut(s)	891
BsuRI	GGCC	2 cut(s)	132, 232
BtsCI	GGATG	4 cut(s)	425, 619, 655, 676
BtsIMutI	CAGTG	2 cut(s)	59, 1015
BveI	ACCTGC	2 cut(s)	705, 929
CfoI	GCGC	2 cut(s)	525, 953
Cfr13I	GGNCC	2 cut(s)	929, 941
Csp6I	GTAC	3 cut(s)	190, 436, 444
CviAII	CATG	5 cut(s)	52, 193, 277, 479, 484
CviJI	RGCY	9 cut(s)	132, 232, 267, 281, 778, 926, 974, 997, 1032
CviKI_1	RGCY	9 cut(s)	132, 232, 267, 281, 778, 926, 974, 997, 1032
CviQI	GTAC	3 cut(s)	190, 436, 444
DdeI	CTNAG	2 cut(s)	407, 1040
DpnI	GATC	4 cut(s)	155, 389, 501, 715
DpnII	GATC	4 cut(s)	153, 387, 499, 713
DraI	TTTAAA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	929, 941
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	5 cut(s)	55, 196, 280, 482, 487
FatI	CATG	5 cut(s)	51, 192, 276, 478, 483
FauI	CCCGC	1 cut(s)	841
FauNDI	CATATG	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	282, 701
FokI	GGATG	4 cut(s)	412, 626, 662, 683
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	2 cut(s)	282, 701
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	2 cut(s)	524, 952
GluI	GCNGC	2 cut(s)	282, 701
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	2 cut(s)	132, 232
HapII	CCGG	2 cut(s)	259, 773
HhaI	GCGC	2 cut(s)	525, 953
Hin1II	CATG	5 cut(s)	55, 196, 280, 482, 487
Hin6I	GCGC	2 cut(s)	523, 951
HinP1I	GCGC	2 cut(s)	523, 951
HinfI	GANTC	3 cut(s)	4, 250, 350
HpaII	CCGG	2 cut(s)	259, 773
HphI	GGTGA	4 cut(s)	301, 711, 856, 948
Hpy166II	GTNNAC	4 cut(s)	95, 436, 1013, 1019
Hpy188I	TCNGA	5 cut(s)	16, 203, 387, 408, 475
Hpy188III	TCNNGA	7 cut(s)	108, 247, 259, 342, 708, 773, 978
Hpy8I	GTNNAC	4 cut(s)	95, 436, 1013, 1019
HpyAV	CCTTC	4 cut(s)	313, 714, 801, 894
HpyCH4III	ACNGT	2 cut(s)	272, 960
HpyCH4IV	ACGT	2 cut(s)	306, 1015
HpyCH4V	TGCA	4 cut(s)	462, 514, 676, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	475, 520
HpyF3I	CTNAG	2 cut(s)	407, 1040
HpySE526I	ACGT	2 cut(s)	306, 1015
Hsp92II	CATG	5 cut(s)	55, 196, 280, 482, 487
HspAI	GCGC	2 cut(s)	523, 951
Kpn2I	TCCGGA	2 cut(s)	258, 772
Kzo9I	GATC	4 cut(s)	153, 387, 499, 713
LmnI	GCTCC	2 cut(s)	487, 775
Lsp1109I	GCAGC	2 cut(s)	268, 687
LweI	GCATC	3 cut(s)	319, 412, 501
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	2 cut(s)	306, 1015
MaeIII	GTNAC	3 cut(s)	272, 410, 572
MalI	GATC	4 cut(s)	155, 389, 501, 715
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	4 cut(s)	153, 387, 499, 713
MboII	GAAGA	5 cut(s)	148, 182, 509, 650, 723
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	780
MluCI	AATT	5 cut(s)	148, 207, 379, 591, 756
Mph1103I	ATGCAT	1 cut(s)	516
MroI	TCCGGA	2 cut(s)	258, 772
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	6 cut(s)	186, 309, 377, 504, 828, 1045
MslI	CAYNNNNRTG	1 cut(s)	605
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	2 cut(s)	259, 773
MvnI	CGCG	1 cut(s)	951
MwoI	GCNNNNNNNGC	2 cut(s)	475, 520
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	4 cut(s)	153, 387, 499, 713
NlaIII	CATG	5 cut(s)	55, 196, 280, 482, 487
NlaIV	GGNNCC	1 cut(s)	777
NmuCI	GTSAC	2 cut(s)	272, 572
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	794
PaeR7I	CTCGAG	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	250, 350
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	2 cut(s)	283, 702
PpuMI	RGGWCCY	1 cut(s)	941
PshBI	ATTAAT	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	941
PspN4I	GGNNCC	1 cut(s)	777
PspPI	GGNCC	2 cut(s)	929, 941
PspPPI	RGGWCCY	1 cut(s)	941
PspXI	VCTCGAGB	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	3 cut(s)	191, 437, 445
RsaNI	GTAC	3 cut(s)	190, 436, 444
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	6 cut(s)	186, 309, 377, 504, 828, 1045
SatI	GCNGC	2 cut(s)	282, 701
Sau3AI	GATC	4 cut(s)	153, 387, 499, 713
Sau96I	GGNCC	2 cut(s)	929, 941
ScaI	AGTACT	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	3 cut(s)	319, 412, 501
SfcI	CTRYAG	2 cut(s)	268, 632
Sfr274I	CTCGAG	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	794
SinI	GGWCC	2 cut(s)	929, 941
SlaI	CTCGAG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	3 cut(s)	439, 503, 976
SmoI	CTYRAG	3 cut(s)	439, 503, 976
Sse9I	AATT	5 cut(s)	148, 207, 379, 591, 756
SsiI	CCGC	3 cut(s)	362, 467, 834
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	272, 960
TaiI	ACGT	2 cut(s)	309, 1018
TaqI	TCGA	3 cut(s)	440, 794, 970
TasI	AATT	5 cut(s)	148, 207, 379, 591, 756
TatI	WGTACW	3 cut(s)	189, 435, 443
TfiI	GAWTC	2 cut(s)	250, 350
Tru1I	TTAA	6 cut(s)	186, 309, 377, 504, 828, 1045
Tru9I	TTAA	6 cut(s)	186, 309, 377, 504, 828, 1045
TscAI	CASTG	2 cut(s)	66, 1015
TseFI	GTSAC	2 cut(s)	272, 572
TseI	GCWGC	2 cut(s)	281, 700
Tsp45I	GTSAC	2 cut(s)	272, 572
TspDTI	ATGAA	5 cut(s)	68, 189, 510, 573, 666
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	2 cut(s)	66, 1015
Van91I	CCANNNNNTGG	1 cut(s)	926
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	2 cut(s)	929, 941
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	4 cut(s)	148, 207, 379, 756
XceI	RCATGY	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	445
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.