Rh1DG419500

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007729
Physical Location & Seq
Reverse (-)
63431823 .. 63432584
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG419500.1

Sequence Viewer

Length: 471 bp
ATGAGAGAGGATGATGTTCCGTGTTGCCAGGTCGATTTCTGGGTGTTTATAGTGATTAGCTTGATCCTTGCGTCACTTGCTGGTATTGCATCAGGCCTTGCATTAGGACTCTTGTCCTTCAGCAAAGTTGATCTTGAGGTTCTCATTAGGTCCGGTCAACCCAAAGACCAGAAGAATGCAGCAACGATTCTGCCACTTGTTAAGAATGAGCATCTACTGTTATGTACTCTCCTCATATGCAAATCATTGGCCTTGGAGGCACTTCCCATTTTCGTGGACTCAATTCTCCCAGTTTGGGCTGCCATTCTTGTGTCTGGCACGATTGTAGTTGCAGTTACAGAGATCATTCCTCAAGCTGTATGTTCCCGATATGGACTAAGTCTTGGTGCAAAAGGATCTTACTTGGTACGATTACTTCTGGTGGTTTTTTTCCCCATAGCATACCCTTTCAGTAAGGTAATACATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

156

Amino Acids

16.83

Weight (kDa)

6.7

Isoelectric Point (pI)

25.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 19 - 154 6e-20 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 58, 403
AcuI CTGAAG 1 cut(s) 103
AfaI GTAC 2 cut(s) 226, 408
AfiI CCNNNNNNNGG 1 cut(s) 295
AflIII ACRYGT 1 cut(s) 463
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 60, 356
AluI AGCT 2 cut(s) 60, 356
AlwI GGATC 2 cut(s) 58, 403
AoxI GGCC 2 cut(s) 94, 249
ApeKI GCWGC 2 cut(s) 179, 299
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
BbvI GCAGC 2 cut(s) 191, 286
BciT130I CCWGG 1 cut(s) 29
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 2 cut(s) 180, 300
BlsI GCNGC 2 cut(s) 181, 301
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 98, 220
BmuI ACTGGG 1 cut(s) 284
BoxI GACNNNNGTC 1 cut(s) 112
BpuEI CTTGAG 2 cut(s) 155, 336
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 191, 286
BshFI GGCC 2 cut(s) 96, 251
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 295
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 2 cut(s) 96, 251
Bsp143I GATC 4 cut(s) 63, 130, 342, 395
BspANI GGCC 2 cut(s) 96, 251
BspPI GGATC 2 cut(s) 58, 403
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 4 cut(s) 63, 130, 342, 395
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 4 cut(s) 66, 133, 345, 398
BstMBI GATC 4 cut(s) 63, 130, 342, 395
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 257
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 467
BstPAI GACNNNNGTC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 191, 286
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 2 cut(s) 96, 251
BtsCI GGATG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 225, 407
CviAII CATG 1 cut(s) 464
CviJI RGCY 5 cut(s) 60, 96, 251, 299, 356
CviKI_1 RGCY 5 cut(s) 60, 96, 251, 299, 356
CviQI GTAC 2 cut(s) 225, 407
DdeI CTNAG 1 cut(s) 377
DpnI GATC 4 cut(s) 65, 132, 344, 397
DpnII GATC 4 cut(s) 63, 130, 342, 395
Eco130I CCWWGG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 1 cut(s) 467
FaiI YATR 9 cut(s) 50, 223, 236, 238, 361, 372, 437, 442, 465
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 1 cut(s) 463
FauNDI CATATG 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 180, 300
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 180, 300
GluI GCNGC 2 cut(s) 180, 300
HaeIII GGCC 2 cut(s) 96, 251
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 467
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 3 cut(s) 108, 187, 278
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 2 cut(s) 158, 277
Hpy188III TCNNGA 2 cut(s) 134, 366
Hpy8I GTNNAC 2 cut(s) 158, 277
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 6 cut(s) 89, 101, 179, 240, 332, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 257
HpyF3I CTNAG 1 cut(s) 377
Hsp92II CATG 1 cut(s) 467
Kzo9I GATC 4 cut(s) 63, 130, 342, 395
Lsp1109I GCAGC 2 cut(s) 191, 286
LweI GCATC 2 cut(s) 98, 220
MaeIII GTNAC 2 cut(s) 72, 334
MalI GATC 4 cut(s) 65, 132, 344, 397
MboI GATC 4 cut(s) 63, 130, 342, 395
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 395
MluCI AATT 1 cut(s) 282
MlyI GAGTC 2 cut(s) 102, 272
MnlI CCTC 4 cut(s) 130, 242, 250, 360
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 2 cut(s) 272, 308
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 257
NdeI CATATG 1 cut(s) 236
NdeII GATC 4 cut(s) 63, 130, 342, 395
NlaIII CATG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 72
NspI RCATGY 1 cut(s) 467
PceI AGGCCT 1 cut(s) 96
PciI ACATGT 1 cut(s) 463
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 378
PkrI GCNGC 2 cut(s) 181, 301
PleI GAGTC 2 cut(s) 102, 272
PpsI GAGTC 2 cut(s) 102, 272
PscI ACATGT 1 cut(s) 463
PshAI GACNNNNGTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 395
PsyI GACNNNGTC 1 cut(s) 378
RsaI GTAC 2 cut(s) 226, 408
RsaNI GTAC 2 cut(s) 225, 407
RseI CAYNNNNRTG 2 cut(s) 272, 308
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 180, 300
Sau3AI GATC 4 cut(s) 63, 130, 342, 395
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 102, 272
ScrFI CCNGG 1 cut(s) 29
SetI ASST 6 cut(s) 33, 62, 141, 152, 358, 459
SfaNI GCATC 2 cut(s) 98, 220
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 272, 308
SmlI CTYRAG 2 cut(s) 134, 351
SmoI CTYRAG 2 cut(s) 134, 351
Sse9I AATT 1 cut(s) 282
SseBI AGGCCT 1 cut(s) 96
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 2 cut(s) 179, 299
Tsp45I GTSAC 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 9
Tth111I GACNNNGTC 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.