Rmu_sc0003562.1_g000007

DUF21 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003562.1
Physical Location & Seq
Reverse (-)
15785 .. 18737
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003562.1_g000007.1.cds

Sequence Viewer

Length: 1320 bp
atgagagaggatgatgttccgtgttgccaggtcgatttctgggtgtttatagtgattagcttgatccttgcgtcacttgctggtattgcatcaggccttgcattaggactcttgtccttcagcaaagttgatcttgaggttctcattaggtccggtcaacccaaagaccagaagaatgcagggataggtggagagttgtcgcatcatgaaactacagttattggtggtgctttggatttgacgcgaaagactgctgaagatgcaatgactccaatatcagaaactttttcccttgacataaactccaaacttgacatgaatacactgggttcaataatgagcagaggtcatagtcgtataccaatctattcaggaaacccaaacaatatcattggccttattttggcaaagaatttgatcttctgtcgccctgaagatgaaaccccagttaagtacatgacaatcagaaaaattccaagggtttatggcaactggcctttatatgatatcctgaatcagttccggaaaggctacagtcacatggctgctgtggtgaggaataaaaaggacgttaatggacagaaggaaaaagatgctaggagttcaagattagattcaacacgagcggagagcaaaggtttaaattctccgatcaatgggaaagagcatctgagtaacaccatagacacatcccctgtgtactcgagtactgatacagaatactgcactccgctatcagagcatgtcatggagcaagatgaagatcttaagcagatgcataacaagcgccataaaaagcagggaggtggaaatgtatcaaatgaaagtgtaggatctattcaaagtcacttggacgaggaggtaattggtatcataacaatggaggatgttatggaggaactgctacaggaagacatactggatgaaacagatgagtatgtggatgtgcataacaaaatcaaaatcaacctgctaccttcaagaagatcatcaccctcaaaatctcctagaacaaagtctctatctcaaatttattggagaactccggagccctctcccctgccttcgaaatacaatagtcctatactccattctcccattaatcccgcatacattcaaccacctcctttcctcatcaccagacctactttgtatccttcccctgctaaatcattactcaatatcagttctccacaagctggaccatttgcaggtcctattcgcgcctcaccatcctcacatcgagcctcaagaaagtcatatgagaagctacgacaacccagtggacgtaaacctacaagaagctactcgctgagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

48.77

Weight (kDa)

8.46

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 978, 1202
AccB7I CCANNNNNTGG 1 cut(s) 1199
AccBSI CCGCTC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 358
AccII CGCG 2 cut(s) 244, 1224
AccIII TCCGGA 2 cut(s) 522, 1045
AciI CCGC 3 cut(s) 626, 731, 1107
AclWI GGATC 2 cut(s) 58, 841
AcsI RAATTY 4 cut(s) 412, 471, 643, 1029
AcuI CTGAAG 3 cut(s) 103, 276, 453
AfaI GTAC 3 cut(s) 455, 701, 709
AfiI CCNNNNNNNGG 4 cut(s) 403, 656, 1199, 1211
AflII CTTAAG 1 cut(s) 767
AgsI TTSAA 6 cut(s) 333, 606, 618, 842, 981, 1118
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 4 cut(s) 60, 1199, 1270, 1305
AluI AGCT 4 cut(s) 60, 1199, 1270, 1305
Alw26I GTCTC 1 cut(s) 1023
AlwI GGATC 2 cut(s) 58, 841
Ama87I CYCGRG 1 cut(s) 703
Aor13HI TCCGGA 2 cut(s) 522, 1045
AoxI GGCC 3 cut(s) 94, 394, 494
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 4 cut(s) 412, 471, 643, 1029
AseI ATTAAT 1 cut(s) 1101
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 2 cut(s) 789, 1226
AspS9I GGNCC 3 cut(s) 150, 1202, 1214
AsuHPI GGTGA 4 cut(s) 565, 984, 1129, 1221
AsuII TTCGAA 1 cut(s) 1067
AvaI CYCGRG 1 cut(s) 703
AvaII GGWCC 3 cut(s) 150, 1202, 1214
BanII GRGCYC 1 cut(s) 1053
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 918
BbvI GCAGC 1 cut(s) 532
BccI CCATC 1 cut(s) 1240
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 1164
BcoDI GTCTC 1 cut(s) 1023
BfaI CTAG 2 cut(s) 597, 1008
BfmI CTRYAG 3 cut(s) 213, 532, 905
BfoI RGCGCY 1 cut(s) 790
BfrI CTTAAG 1 cut(s) 767
BfuAI ACCTGC 2 cut(s) 978, 1202
BfuI GTATCC 1 cut(s) 1164
BglII AGATCT 1 cut(s) 763
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 3 cut(s) 150, 1202, 1214
BmeT110I CYCGRG 1 cut(s) 703
BmgT120I GGNCC 3 cut(s) 150, 1202, 1214
BmiI GGNNCC 1 cut(s) 1050
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 3 cut(s) 335, 440, 1275
BmsI GCATC 6 cut(s) 98, 211, 250, 583, 676, 765
BmuI ACTGGG 3 cut(s) 335, 440, 1275
BoxI GACNNNNGTC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 1067
BpuEI CTTGAG 2 cut(s) 155, 1234
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 476
BsaWI WCCGGW 3 cut(s) 152, 522, 1045
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 403, 656, 1199, 1211
Bse1I ACTGG 5 cut(s) 330, 446, 497, 924, 1281
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 762
BseAI TCCGGA 2 cut(s) 522, 1045
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 476
BseGI GGATG 6 cut(s) 16, 689, 892, 928, 949, 1232
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 4 cut(s) 403, 656, 1199, 1211
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 662, 1304
BseNI ACTGG 5 cut(s) 330, 446, 497, 924, 1281
BseRI GAGGAG 1 cut(s) 872
BseXI GCAGC 1 cut(s) 532
BsgI GTGCAG 1 cut(s) 709
Bsh1236I CGCG 2 cut(s) 244, 1224
BshFI GGCC 3 cut(s) 96, 396, 496
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 3 cut(s) 153, 523, 1046
BslI CCNNNNNNNGG 4 cut(s) 403, 656, 1199, 1211
BsmAI GTCTC 1 cut(s) 1023
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 3 cut(s) 96, 396, 496
BsoBI CYCGRG 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 1067
Bsp1286I GDGCHC 1 cut(s) 1053
Bsp13I TCCGGA 2 cut(s) 522, 1045
Bsp143I GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
BspACI CCGC 3 cut(s) 626, 731, 1107
BspANI GGCC 3 cut(s) 96, 396, 496
BspCNI CTCAG 2 cut(s) 663, 1305
BspEI TCCGGA 2 cut(s) 522, 1045
BspFNI CGCG 2 cut(s) 244, 1224
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 1050
BspMI ACCTGC 2 cut(s) 978, 1202
BspPI GGATC 2 cut(s) 58, 841
BspT104I TTCGAA 1 cut(s) 1067
BspTI CTTAAG 1 cut(s) 767
BsrBI CCGCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 5 cut(s) 330, 446, 497, 924, 1281
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
BssNAI GTATAC 1 cut(s) 359
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 476
Bst1107I GTATAC 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 217, 536
BstAFI CTTAAG 1 cut(s) 767
BstBI TTCGAA 1 cut(s) 1067
BstDEI CTNAG 2 cut(s) 671, 1313
BstF5I GGATG 6 cut(s) 16, 689, 892, 928, 949, 1232
BstFNI CGCG 2 cut(s) 244, 1224
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 2 cut(s) 789, 1226
BstKTI GATC 7 cut(s) 66, 133, 420, 654, 766, 836, 989
BstMAI GTCTC 1 cut(s) 1023
BstMBI GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
BstMWI GCNNNNNNNGC 5 cut(s) 77, 86, 260, 739, 784
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 746
BstPAI GACNNNNGTC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 3 cut(s) 213, 532, 905
BstUI CGCG 2 cut(s) 244, 1224
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 918
BstX2I RGATCY 2 cut(s) 763, 833
BstYI RGATCY 2 cut(s) 763, 833
BstZ17I GTATAC 1 cut(s) 359
BsuI GTATCC 1 cut(s) 1164
BsuRI GGCC 3 cut(s) 96, 396, 496
BtsCI GGATG 6 cut(s) 16, 689, 892, 928, 949, 1232
BtsIMutI CAGTG 2 cut(s) 323, 1288
BveI ACCTGC 2 cut(s) 978, 1202
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 789, 1226
Cfr13I GGNCC 3 cut(s) 150, 1202, 1214
CseI GACGC 2 cut(s) 60, 250
Csp6I GTAC 3 cut(s) 454, 700, 708
CviAII CATG 6 cut(s) 206, 316, 457, 541, 743, 748
CviQI GTAC 3 cut(s) 454, 700, 708
DdeI CTNAG 2 cut(s) 671, 1313
DpnI GATC 7 cut(s) 65, 132, 419, 653, 765, 835, 988
DpnII GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
DraI TTTAAA 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 476
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 1053
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 3 cut(s) 150, 1202, 1214
Eco57I CTGAAG 3 cut(s) 103, 276, 453
Eco88I CYCGRG 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 1214
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 476
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 1 cut(s) 1053
ErhI CCWWGG 1 cut(s) 476
FaeI CATG 6 cut(s) 209, 319, 460, 544, 746, 751
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 6 cut(s) 205, 315, 456, 540, 742, 747
FauI CCCGC 1 cut(s) 1114
FauNDI CATATG 1 cut(s) 1261
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 6 cut(s) 23, 676, 899, 935, 956, 1219
FriOI GRGCYC 1 cut(s) 1053
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 2 cut(s) 597, 1008
GlaI GCGC 2 cut(s) 788, 1225
GluI GCNGC 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 3 cut(s) 96, 396, 496
HapII CCGG 3 cut(s) 153, 523, 1046
HgaI GACGC 2 cut(s) 60, 250
HhaI GCGC 2 cut(s) 789, 1226
Hin1II CATG 6 cut(s) 209, 319, 460, 544, 746, 751
Hin6I GCGC 2 cut(s) 787, 1224
HinP1I GCGC 2 cut(s) 787, 1224
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 4 cut(s) 108, 268, 514, 614
HpaII CCGG 3 cut(s) 153, 523, 1046
HphI GGTGA 4 cut(s) 565, 984, 1129, 1221
Hpy166II GTNNAC 5 cut(s) 158, 359, 700, 1286, 1292
Hpy188I TCNGA 5 cut(s) 280, 467, 651, 672, 739
Hpy188III TCNNGA 9 cut(s) 134, 206, 372, 511, 523, 606, 981, 1046, 1251
Hpy8I GTNNAC 5 cut(s) 158, 359, 700, 1286, 1292
HpyAV CCTTC 5 cut(s) 127, 577, 987, 1074, 1167
HpyCH4III ACNGT 2 cut(s) 217, 536
HpyCH4IV ACGT 2 cut(s) 570, 1288
HpyCH4V TGCA 8 cut(s) 89, 101, 179, 263, 726, 778, 949, 1211
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 86, 260, 739, 784
HpyF3I CTNAG 2 cut(s) 671, 1313
HpySE526I ACGT 2 cut(s) 570, 1288
Hsp92II CATG 6 cut(s) 209, 319, 460, 544, 746, 751
HspAI GCGC 2 cut(s) 787, 1224
Kpn2I TCCGGA 2 cut(s) 522, 1045
Kzo9I GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
LmnI GCTCC 2 cut(s) 751, 1048
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 6 cut(s) 98, 211, 250, 583, 676, 765
MaeI CTAG 2 cut(s) 597, 1008
MaeII ACGT 2 cut(s) 570, 1288
MaeIII GTNAC 4 cut(s) 72, 536, 674, 845
MalI GATC 7 cut(s) 65, 132, 419, 653, 765, 835, 988
MbiI CCGCTC 1 cut(s) 626
MboI GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
MboII GAAGA 7 cut(s) 184, 269, 412, 446, 773, 923, 996
MflI RGATCY 2 cut(s) 763, 833
MhlI GDGCHC 1 cut(s) 1053
MluCI AATT 5 cut(s) 412, 471, 643, 864, 1029
MlyI GAGTC 2 cut(s) 102, 262
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 2 cut(s) 522, 1045
MroXI GAANNNNTTC 1 cut(s) 518
MseI TTAA 6 cut(s) 450, 573, 641, 768, 1101, 1318
MslI CAYNNNNRTG 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 767
MspI CCGG 3 cut(s) 153, 523, 1046
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 2 cut(s) 244, 1224
MwoI GCNNNNNNNGC 5 cut(s) 77, 86, 260, 739, 784
NdeI CATATG 1 cut(s) 1261
NdeII GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
NlaIII CATG 6 cut(s) 209, 319, 460, 544, 746, 751
NlaIV GGNNCC 1 cut(s) 1050
NmuCI GTSAC 3 cut(s) 72, 536, 845
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 1 cut(s) 746
NspV TTCGAA 1 cut(s) 1067
PaeR7I CTCGAG 1 cut(s) 703
PagI TCATGA 1 cut(s) 205
PceI AGGCCT 1 cut(s) 96
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 514, 614
PflMI CCANNNNNTGG 1 cut(s) 1199
PkrI GCNGC 1 cut(s) 547
PleI GAGTC 2 cut(s) 102, 262
PpsI GAGTC 2 cut(s) 102, 262
PpuMI RGGWCCY 1 cut(s) 1214
PshAI GACNNNNGTC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 1214
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 1050
PspPI GGNCC 3 cut(s) 150, 1202, 1214
PspPPI RGGWCCY 1 cut(s) 1214
PspXI VCTCGAGB 1 cut(s) 703
PsuI RGATCY 2 cut(s) 763, 833
RsaI GTAC 3 cut(s) 455, 701, 709
RsaNI GTAC 3 cut(s) 454, 700, 708
RseI CAYNNNNRTG 1 cut(s) 878
SaqAI TTAA 6 cut(s) 450, 573, 641, 768, 1101, 1318
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 7 cut(s) 63, 130, 417, 651, 763, 833, 986
Sau96I GGNCC 3 cut(s) 150, 1202, 1214
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 2 cut(s) 102, 262
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 1053
SfaNI GCATC 6 cut(s) 98, 211, 250, 583, 676, 765
SfcI CTRYAG 3 cut(s) 213, 532, 905
Sfr274I CTCGAG 1 cut(s) 703
SfuI TTCGAA 1 cut(s) 1067
SinI GGWCC 3 cut(s) 150, 1202, 1214
SlaI CTCGAG 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 4 cut(s) 134, 703, 767, 1249
SmoI CTYRAG 4 cut(s) 134, 703, 767, 1249
Sse9I AATT 5 cut(s) 412, 471, 643, 864, 1029
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 3 cut(s) 626, 731, 1107
SspMI CTAG 2 cut(s) 597, 1008
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 2 cut(s) 217, 536
TaiI ACGT 2 cut(s) 573, 1291
TaqI TCGA 4 cut(s) 33, 704, 1067, 1243
TasI AATT 5 cut(s) 412, 471, 643, 864, 1029
TatI WGTACW 3 cut(s) 453, 699, 707
TfiI GAWTC 2 cut(s) 514, 614
Tru1I TTAA 6 cut(s) 450, 573, 641, 768, 1101, 1318
Tru9I TTAA 6 cut(s) 450, 573, 641, 768, 1101, 1318
TscAI CASTG 2 cut(s) 330, 1288
TseFI GTSAC 3 cut(s) 72, 536, 845
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 3 cut(s) 72, 536, 845
TspDTI ATGAA 6 cut(s) 222, 332, 453, 774, 837, 939
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 2 cut(s) 330, 1288
Van91I CCANNNNNTGG 1 cut(s) 1199
Vha464I CTTAAG 1 cut(s) 767
VpaK11BI GGWCC 3 cut(s) 150, 1202, 1214
VspI ATTAAT 1 cut(s) 1101
XapI RAATTY 4 cut(s) 412, 471, 643, 1029
XceI RCATGY 1 cut(s) 746
XhoI CTCGAG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 2 cut(s) 597, 1008
ZrmI AGTACT 1 cut(s) 709
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.