Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008712.1

Orthogroup ID

OG0007729

Physical Location & Seq

Genomic Coordinates Forward (+)

57707 .. 60656

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008712.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgagagaggatgatgttccgtgttgccaggtcgatttctgggtgtttatagtgattagcttgatccttgcgtcacttgctggtattgcatcaggccttgcattaggactcttgtccttcagcaaagttgatcttgaggttctcattaggtccggtcaacccaaagaccagaagaatgcagggataggtggagagttgtcgcatcatgaaactacagttattggtggtgctttggatttgacgcgaaagactgctgaagatgcaatgactccaatatcagaaactttttcccttgacataaactccaaacttgacatgaatacactgggttcaataatgagcagaggtcatagtcgtataccaatctattcaggaaacccaaacaatatcattggccttattttggcaaagaatttgatcttctgtcgccctgaagatgaaaccccagttaagtacatgacaatcagaaaaattccaagggtttatggcaactggcctttatatgatatcctgaatcagttccggaaaggctacagtcacatggctgctgtggtgaggaataaaaaggacgttaatggacagaaggaaaaagatgctaggagttcaagattagattcaacacgagcggagagcaaagatattacagctttaaattctccgatcaatgggaaagagcatctgagtaacaccatcgacacatcccctgtgtacttgagtactgatacagaatactgcactccgctatcagagcatgtcatggagcaagatgaagatcttaagcagatgcataacaagcgccataaaaagcagggaggtggaaatgtatcaaatgaaagtgtaggatctattcaaagtcacttggacgaggaggtaattggtatcataacaatggaggatgttatggaggaactgctacaggaagacatactggatgaaacagatgagtatgtggatgtgcataacaaaatcaaaatcaacctgctaccttcaagaagatcgtcaccctcaaaatctcctagaacaaagtctctatctcaaatttattggagaactccggagccctctcccctgccttcgaaatacaatagtcctatactccattctcccattaatcccgcatacattcaaccacctcctttcctcatcaccagacctactttgtatccttcccctgctaaatcattactcaatatcagttctccacaagctggaccatttgcaggtcctattcgcgcctcaccatcctcacatcgagcctcaagaaagtcatatgagaagctacgacaacccagtggacgtaaacctacaagaagctactcgctgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

442

Amino Acids

49.14

Weight (kDa)

8.18

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52790 AT5G52790 AT5G52790 AT5G52790 AT5G52790
fragaria_vesca	FvH4_2g02720 FvH4_7g30340 FvH4_7g30360
malus_domestica	MD01G1209400.v1.1 MD07G1279700.v1.1
prunus_persica	Prupe.2G301800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378481
rosa_laevigata	RLG00000026433
rosa_multiflora	Rmu_sc0003562.1_g000007 Rmu_sc0008712.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280430
rosa_rugosa	Rorug01G0409200 Rorug01G0409300
rosa_samantha	Rh1AG430500 Rh1BG388400 Rh1CG401800 Rh1DG419400 Rh1DG419500
rosa_wichuraiana	Rw1G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	987, 1211
AccB7I	CCANNNNNTGG	1 cut(s)	1208
AccBSI	CCGCTC	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	2 cut(s)	244, 1233
AccIII	TCCGGA	2 cut(s)	522, 1054
AciI	CCGC	3 cut(s)	626, 740, 1116
AclWI	GGATC	2 cut(s)	58, 850
AcsI	RAATTY	4 cut(s)	412, 471, 652, 1038
AcuI	CTGAAG	3 cut(s)	103, 276, 453
AfaI	GTAC	3 cut(s)	455, 710, 718
AfiI	CCNNNNNNNGG	4 cut(s)	403, 665, 1208, 1220
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	6 cut(s)	333, 606, 618, 851, 990, 1127
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	5 cut(s)	60, 647, 1208, 1279, 1314
AluI	AGCT	5 cut(s)	60, 647, 1208, 1279, 1314
Alw26I	GTCTC	1 cut(s)	1032
AlwI	GGATC	2 cut(s)	58, 850
Aor13HI	TCCGGA	2 cut(s)	522, 1054
AoxI	GGCC	3 cut(s)	94, 394, 494
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	4 cut(s)	412, 471, 652, 1038
AseI	ATTAAT	1 cut(s)	1110
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	798, 1235
AspS9I	GGNCC	3 cut(s)	150, 1211, 1223
AsuHPI	GGTGA	4 cut(s)	565, 993, 1138, 1230
AsuII	TTCGAA	1 cut(s)	1076
AvaII	GGWCC	3 cut(s)	150, 1211, 1223
BanII	GRGCYC	1 cut(s)	1062
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	927
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	2 cut(s)	698, 1249
BciT130I	CCWGG	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	1173
BcoDI	GTCTC	1 cut(s)	1032
BfaI	CTAG	2 cut(s)	597, 1017
BfmI	CTRYAG	3 cut(s)	213, 532, 914
BfoI	RGCGCY	1 cut(s)	799
BfrI	CTTAAG	1 cut(s)	776
BfuAI	ACCTGC	2 cut(s)	987, 1211
BfuI	GTATCC	1 cut(s)	1173
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	1 cut(s)	546
BlsI	GCNGC	1 cut(s)	547
BmcAI	AGTACT	1 cut(s)	718
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	3 cut(s)	150, 1211, 1223
BmgT120I	GGNCC	3 cut(s)	150, 1211, 1223
BmiI	GGNNCC	1 cut(s)	1059
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	3 cut(s)	335, 440, 1284
BmsI	GCATC	6 cut(s)	98, 211, 250, 583, 685, 774
BmuI	ACTGGG	3 cut(s)	335, 440, 1284
BoxI	GACNNNNGTC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	927
Bpu14I	TTCGAA	1 cut(s)	1076
BpuEI	CTTGAG	3 cut(s)	155, 733, 1243
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	3 cut(s)	152, 522, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 665, 1208, 1220
Bse1I	ACTGG	5 cut(s)	330, 446, 497, 933, 1290
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	771
BseAI	TCCGGA	2 cut(s)	522, 1054
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	6 cut(s)	16, 698, 901, 937, 958, 1241
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	4 cut(s)	403, 665, 1208, 1220
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	671, 1313
BseNI	ACTGG	5 cut(s)	330, 446, 497, 933, 1290
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	718
Bsh1236I	CGCG	2 cut(s)	244, 1233
BshFI	GGCC	3 cut(s)	96, 396, 496
BsiSI	CCGG	3 cut(s)	153, 523, 1055
BslI	CCNNNNNNNGG	4 cut(s)	403, 665, 1208, 1220
BsmAI	GTCTC	1 cut(s)	1032
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	96, 396, 496
Bsp119I	TTCGAA	1 cut(s)	1076
Bsp1286I	GDGCHC	1 cut(s)	1062
Bsp13I	TCCGGA	2 cut(s)	522, 1054
Bsp143I	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
BspACI	CCGC	3 cut(s)	626, 740, 1116
BspANI	GGCC	3 cut(s)	96, 396, 496
BspCNI	CTCAG	2 cut(s)	672, 1314
BspEI	TCCGGA	2 cut(s)	522, 1054
BspFNI	CGCG	2 cut(s)	244, 1233
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	1059
BspMI	ACCTGC	2 cut(s)	987, 1211
BspPI	GGATC	2 cut(s)	58, 850
BspT104I	TTCGAA	1 cut(s)	1076
BspTI	CTTAAG	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	5 cut(s)	330, 446, 497, 933, 1290
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
BssNAI	GTATAC	1 cut(s)	359
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	476
Bst1107I	GTATAC	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	217, 536
BstAFI	CTTAAG	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	1076
BstDEI	CTNAG	2 cut(s)	680, 1322
BstF5I	GGATG	6 cut(s)	16, 698, 901, 937, 958, 1241
BstFNI	CGCG	2 cut(s)	244, 1233
BstH2I	RGCGCY	1 cut(s)	799
BstHHI	GCGC	2 cut(s)	798, 1235
BstKTI	GATC	7 cut(s)	66, 133, 420, 663, 775, 845, 998
BstMAI	GTCTC	1 cut(s)	1032
BstMBI	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 86, 260, 748, 793
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	755
BstPAI	GACNNNNGTC	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	3 cut(s)	213, 532, 914
BstUI	CGCG	2 cut(s)	244, 1233
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	927
BstX2I	RGATCY	2 cut(s)	772, 842
BstYI	RGATCY	2 cut(s)	772, 842
BstZ17I	GTATAC	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	1173
BsuRI	GGCC	3 cut(s)	96, 396, 496
BtsCI	GGATG	6 cut(s)	16, 698, 901, 937, 958, 1241
BtsIMutI	CAGTG	2 cut(s)	323, 1297
BveI	ACCTGC	2 cut(s)	987, 1211
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	798, 1235
Cfr13I	GGNCC	3 cut(s)	150, 1211, 1223
CseI	GACGC	2 cut(s)	60, 250
Csp6I	GTAC	3 cut(s)	454, 709, 717
CviAII	CATG	6 cut(s)	206, 316, 457, 541, 752, 757
CviQI	GTAC	3 cut(s)	454, 709, 717
DdeI	CTNAG	2 cut(s)	680, 1322
DpnI	GATC	7 cut(s)	65, 132, 419, 662, 774, 844, 997
DpnII	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
DraI	TTTAAA	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	476
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	1062
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	150, 1211, 1223
Eco57I	CTGAAG	3 cut(s)	103, 276, 453
EcoO109I	RGGNCCY	1 cut(s)	1223
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	789
EcoT38I	GRGCYC	1 cut(s)	1062
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	6 cut(s)	209, 319, 460, 544, 755, 760
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	6 cut(s)	205, 315, 456, 540, 751, 756
FauI	CCCGC	1 cut(s)	1123
FauNDI	CATATG	1 cut(s)	1270
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	546
FokI	GGATG	6 cut(s)	23, 685, 908, 944, 965, 1228
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	1 cut(s)	546
FspBI	CTAG	2 cut(s)	597, 1017
GlaI	GCGC	2 cut(s)	797, 1234
GluI	GCNGC	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	799
HaeIII	GGCC	3 cut(s)	96, 396, 496
HapII	CCGG	3 cut(s)	153, 523, 1055
HgaI	GACGC	2 cut(s)	60, 250
HhaI	GCGC	2 cut(s)	798, 1235
Hin1II	CATG	6 cut(s)	209, 319, 460, 544, 755, 760
Hin6I	GCGC	2 cut(s)	796, 1233
HinP1I	GCGC	2 cut(s)	796, 1233
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HinfI	GANTC	4 cut(s)	108, 268, 514, 614
HpaII	CCGG	3 cut(s)	153, 523, 1055
HphI	GGTGA	4 cut(s)	565, 993, 1138, 1230
Hpy166II	GTNNAC	5 cut(s)	158, 359, 709, 1295, 1301
Hpy188I	TCNGA	5 cut(s)	280, 467, 660, 681, 748
Hpy188III	TCNNGA	9 cut(s)	134, 206, 372, 511, 523, 606, 990, 1055, 1260
Hpy8I	GTNNAC	5 cut(s)	158, 359, 709, 1295, 1301
HpyAV	CCTTC	5 cut(s)	127, 577, 996, 1083, 1176
HpyCH4III	ACNGT	2 cut(s)	217, 536
HpyCH4IV	ACGT	2 cut(s)	570, 1297
HpyCH4V	TGCA	8 cut(s)	89, 101, 179, 263, 735, 787, 958, 1220
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 86, 260, 748, 793
HpyF3I	CTNAG	2 cut(s)	680, 1322
HpySE526I	ACGT	2 cut(s)	570, 1297
Hsp92II	CATG	6 cut(s)	209, 319, 460, 544, 755, 760
HspAI	GCGC	2 cut(s)	796, 1233
Kpn2I	TCCGGA	2 cut(s)	522, 1054
Kzo9I	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
LmnI	GCTCC	2 cut(s)	760, 1057
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	6 cut(s)	98, 211, 250, 583, 685, 774
MaeI	CTAG	2 cut(s)	597, 1017
MaeII	ACGT	2 cut(s)	570, 1297
MaeIII	GTNAC	5 cut(s)	72, 536, 683, 854, 999
MalI	GATC	7 cut(s)	65, 132, 419, 662, 774, 844, 997
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
MboII	GAAGA	7 cut(s)	184, 269, 412, 446, 782, 932, 1005
MflI	RGATCY	2 cut(s)	772, 842
MhlI	GDGCHC	1 cut(s)	1062
MluCI	AATT	5 cut(s)	412, 471, 652, 873, 1038
MlyI	GAGTC	2 cut(s)	102, 262
Mph1103I	ATGCAT	1 cut(s)	789
MroI	TCCGGA	2 cut(s)	522, 1054
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	6 cut(s)	450, 573, 650, 777, 1110, 1327
MslI	CAYNNNNRTG	1 cut(s)	887
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	3 cut(s)	153, 523, 1055
MspR9I	CCNGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	2 cut(s)	244, 1233
MwoI	GCNNNNNNNGC	5 cut(s)	77, 86, 260, 748, 793
NdeI	CATATG	1 cut(s)	1270
NdeII	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
NlaIII	CATG	6 cut(s)	209, 319, 460, 544, 755, 760
NlaIV	GGNNCC	1 cut(s)	1059
NmuCI	GTSAC	4 cut(s)	72, 536, 854, 999
NsiI	ATGCAT	1 cut(s)	789
NspI	RCATGY	1 cut(s)	755
NspV	TTCGAA	1 cut(s)	1076
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	96
PctI	GAATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	514, 614
PflMI	CCANNNNNTGG	1 cut(s)	1208
PkrI	GCNGC	1 cut(s)	547
PleI	GAGTC	2 cut(s)	102, 262
PpsI	GAGTC	2 cut(s)	102, 262
PpuMI	RGGWCCY	1 cut(s)	1223
PshAI	GACNNNNGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	1110
Psp5II	RGGWCCY	1 cut(s)	1223
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	1059
PspPI	GGNCC	3 cut(s)	150, 1211, 1223
PspPPI	RGGWCCY	1 cut(s)	1223
PsuI	RGATCY	2 cut(s)	772, 842
RsaI	GTAC	3 cut(s)	455, 710, 718
RsaNI	GTAC	3 cut(s)	454, 709, 717
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	6 cut(s)	450, 573, 650, 777, 1110, 1327
SatI	GCNGC	1 cut(s)	546
Sau3AI	GATC	7 cut(s)	63, 130, 417, 660, 772, 842, 995
Sau96I	GGNCC	3 cut(s)	150, 1211, 1223
ScaI	AGTACT	1 cut(s)	718
SchI	GAGTC	2 cut(s)	102, 262
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	1062
SfaNI	GCATC	6 cut(s)	98, 211, 250, 583, 685, 774
SfcI	CTRYAG	3 cut(s)	213, 532, 914
SfuI	TTCGAA	1 cut(s)	1076
SinI	GGWCC	3 cut(s)	150, 1211, 1223
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	4 cut(s)	134, 712, 776, 1258
SmoI	CTYRAG	4 cut(s)	134, 712, 776, 1258
Sse9I	AATT	5 cut(s)	412, 471, 652, 873, 1038
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	3 cut(s)	626, 740, 1116
SspMI	CTAG	2 cut(s)	597, 1017
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	2 cut(s)	217, 536
TaiI	ACGT	2 cut(s)	573, 1300
TaqI	TCGA	4 cut(s)	33, 693, 1076, 1252
TasI	AATT	5 cut(s)	412, 471, 652, 873, 1038
TatI	WGTACW	3 cut(s)	453, 708, 716
TfiI	GAWTC	2 cut(s)	514, 614
Tru1I	TTAA	6 cut(s)	450, 573, 650, 777, 1110, 1327
Tru9I	TTAA	6 cut(s)	450, 573, 650, 777, 1110, 1327
TscAI	CASTG	2 cut(s)	330, 1297
TseFI	GTSAC	4 cut(s)	72, 536, 854, 999
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	4 cut(s)	72, 536, 854, 999
TspDTI	ATGAA	6 cut(s)	222, 332, 453, 783, 846, 948
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	330, 1297
Van91I	CCANNNNNTGG	1 cut(s)	1208
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	3 cut(s)	150, 1211, 1223
VspI	ATTAAT	1 cut(s)	1110
XapI	RAATTY	4 cut(s)	412, 471, 652, 1038
XceI	RCATGY	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	2 cut(s)	597, 1017
ZrmI	AGTACT	1 cut(s)	718
Zsp2I	ATGCAT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.