Rh1AG430500

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0007729
Physical Location & Seq
Reverse (-)
65716028 .. 65719503
3476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG430500.1

Sequence Viewer

Length: 1455 bp
ATGAAGGCATATGGAAGACGTGTTTCCGGCTCATTTAGCTCAGCATCTTCTACCTTTGGCAGAGTTGCATACTTCATCAAACATCAAATCACAATGAGAGAGGATGATGTTCCGTGTTGCCAGGTCGATTTCTGGGTGTTTATAGTCATTAGCTTGATCCTTGCGTCACTTGCTAGTATTGCATCAGGCCTTGCATTAGGACTCTTGTCCTTCAGCAAAGTTGATCTTGAGGTTCTCATTAGGTCCGGTCAACCCAAAGACCAGAAGAATGCAGCAACGATTCTGCCACTTGTTAAGAATGAGCATCTACTGTTATGTACTCTCCTCATATGCAAATCATTGGCCTTGGAGGCACTTCCCATTTTCGTGGACTCAATTCTCCCAGTTTGGGCTGCCATTCTTGTGTCTGGCACGATTGTAGTTGCAGTTACAGAGCTCATTGCTGTCCTTAGGAATACACTGGGTTCAATAATGAGCAGAGGTCATAGTCGCATACCAATCTATTCAGGAAACCCAAACAATATCATTGGCCTTATTTTGGCAAAGAATTTGATCTTCTGTCGCCCTGAAGATGAAACCCCAGTTAAGTACATGACAATCAGAAAAATTCCAAGGGTTTATGGCAACTGGCCTTTATATGATATCCTGAATCAGTTCCGGAAAGGCTACAGTCACATGGCTGCTGTGGTGAGGAATAAAAAGGACATTAATGGACAGAAGGAAAAAGATGCTAGGAGTTCAAGATTAGATTCAACACGAGCGGAGAGCAAAGGTTTAAATTCTCCGATCAATGGGAAAGAGCATCTGAGTAACACCATCGACACATCCCCTGTGTACTTGAGTACTGATACAGAATACTGCACTCCGCTATCAGAGCATGTCATGGAGCAAGATGAAGATCTTAAGCAGATGCAAAACAAGCGCCATAAAAAGCAGGGAGGTGGAAATGTATCAAATGAAAGTGTAGGATCTATTCAAAGTCACTTGGACGAGGAGGTAATTGGTATCATAACAATGGAGGATGTTATGGAGGAACTGCTACAGGAAGACATACTGGATGAAACAGATGAGTATGTGGATGTGCATAACAAAATCAAAATCAACCTGCTACCTTCAAGAAGATCATCACCCTCAAAATCTCCTAGAACAAAGTCTCTATCTCAAATTTATTGGAGAACTCCGGAGCCCTCTCCCCTGCCTTCGAAATACAATAGTCCTATACTCCGTTCTCCCATTAATCCCGCATACATTCAACCACCTCCTTTCCTCATCACCAGACCTACTTTGTATCCTTCCCCTGCTAAATCATTACTCAATATCAGTTCTCCACAAGCTGGACCATTTGCAGGTCCTATTCGCGCCTCACCGTCCTCACATCGAGCCTCAAGAAAGTCATATGAGAAGCTACGACAACCCAGTGGACGTAAACCTACAAGAAGCTACTCGCTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

484

Amino Acids

53.8

Weight (kDa)

9.32

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 50 - 149 1.2e-07 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1113, 1337
AccB7I CCANNNNNTGG 1 cut(s) 1334
AccBSI CCGCTC 1 cut(s) 761
AccII CGCG 1 cut(s) 1359
AccIII TCCGGA 2 cut(s) 657, 1180
AciI CCGC 3 cut(s) 761, 866, 1242
AclWI GGATC 2 cut(s) 151, 976
AcsI RAATTY 4 cut(s) 547, 606, 778, 1164
AcuI CTGAAG 2 cut(s) 196, 588
AfaI GTAC 4 cut(s) 319, 590, 836, 844
AfiI CCNNNNNNNGG 5 cut(s) 388, 538, 791, 1334, 1346
AflII CTTAAG 1 cut(s) 902
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 6 cut(s) 468, 741, 753, 977, 1116, 1253
AjiI CACGTC 1 cut(s) 20
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 6 cut(s) 39, 153, 436, 1334, 1405, 1440
AluI AGCT 6 cut(s) 39, 153, 436, 1334, 1405, 1440
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 1158
AlwI GGATC 2 cut(s) 151, 976
Aor13HI TCCGGA 2 cut(s) 657, 1180
AoxI GGCC 4 cut(s) 187, 342, 529, 629
ApeKI GCWGC 3 cut(s) 272, 392, 680
ApoI RAATTY 4 cut(s) 547, 606, 778, 1164
AseI ATTAAT 2 cut(s) 708, 1236
Asp700I GAANNNNTTC 1 cut(s) 653
AspLEI GCGC 2 cut(s) 924, 1361
AspS9I GGNCC 3 cut(s) 243, 1337, 1349
AsuHPI GGTGA 4 cut(s) 700, 1119, 1264, 1356
AsuII TTCGAA 1 cut(s) 1202
AvaII GGWCC 3 cut(s) 243, 1337, 1349
AxyI CCTNAGG 1 cut(s) 449
BanII GRGCYC 2 cut(s) 438, 1188
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 22, 1053
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 3 cut(s) 284, 379, 667
BccI CCATC 1 cut(s) 824
BciT130I CCWGG 1 cut(s) 122
BciVI GTATCC 1 cut(s) 1299
BcoDI GTCTC 1 cut(s) 1158
BfaI CTAG 3 cut(s) 174, 732, 1143
BfmI CTRYAG 2 cut(s) 667, 1040
BfoI RGCGCY 1 cut(s) 925
BfrI CTTAAG 1 cut(s) 902
BfuAI ACCTGC 2 cut(s) 1113, 1337
BfuI GTATCC 1 cut(s) 1299
BglI GCCNNNNNGGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 898
BisI GCNGC 3 cut(s) 273, 393, 681
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 3 cut(s) 274, 394, 682
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 3 cut(s) 243, 1337, 1349
BmgBI CACGTC 1 cut(s) 20
BmgT120I GGNCC 3 cut(s) 243, 1337, 1349
BmiI GGNNCC 1 cut(s) 1185
BmrFI CCNGG 1 cut(s) 122
BmrI ACTGGG 4 cut(s) 377, 470, 575, 1410
BmsI GCATC 6 cut(s) 53, 191, 313, 718, 811, 900
BmuI ACTGGG 4 cut(s) 377, 470, 575, 1410
BoxI GACNNNNGTC 1 cut(s) 205
BpiI GAAGAC 2 cut(s) 22, 1053
Bpu1102I GCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 1202
BpuEI CTTGAG 3 cut(s) 248, 859, 1369
BsaBI GATNNNNATC 1 cut(s) 897
BsaJI CCNNGG 2 cut(s) 345, 611
BsaWI WCCGGW 3 cut(s) 245, 657, 1180
Bsc4I CCNNNNNNNGG 5 cut(s) 388, 538, 791, 1334, 1346
Bse1I ACTGG 6 cut(s) 383, 465, 581, 632, 1059, 1416
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 897
BseAI TCCGGA 2 cut(s) 657, 1180
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 345, 611
BseGI GGATG 5 cut(s) 109, 824, 1027, 1063, 1084
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 5 cut(s) 388, 538, 791, 1334, 1346
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 3 cut(s) 54, 797, 1439
BseNI ACTGG 6 cut(s) 383, 465, 581, 632, 1059, 1416
BseRI GAGGAG 2 cut(s) 314, 1007
BseXI GCAGC 3 cut(s) 284, 379, 667
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 1359
BshFI GGCC 4 cut(s) 189, 344, 531, 631
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 4 cut(s) 27, 246, 658, 1181
BslI CCNNNNNNNGG 5 cut(s) 388, 538, 791, 1334, 1346
BsmAI GTCTC 1 cut(s) 1158
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 4 cut(s) 189, 344, 531, 631
Bsp119I TTCGAA 1 cut(s) 1202
Bsp1286I GDGCHC 2 cut(s) 438, 1188
Bsp13I TCCGGA 2 cut(s) 657, 1180
Bsp143I GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
Bsp1720I GCTNAGC 1 cut(s) 40
BspACI CCGC 3 cut(s) 761, 866, 1242
BspANI GGCC 4 cut(s) 189, 344, 531, 631
BspCNI CTCAG 3 cut(s) 53, 798, 1440
BspEI TCCGGA 2 cut(s) 657, 1180
BspFNI CGCG 1 cut(s) 1359
BspLI GGNNCC 1 cut(s) 1185
BspMI ACCTGC 2 cut(s) 1113, 1337
BspPI GGATC 2 cut(s) 151, 976
BspT104I TTCGAA 1 cut(s) 1202
BspTI CTTAAG 1 cut(s) 902
BsrBI CCGCTC 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 6 cut(s) 383, 465, 581, 632, 1059, 1416
BssECI CCNNGG 2 cut(s) 345, 611
BssMI GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 2 cut(s) 345, 611
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 3 cut(s) 312, 671, 1368
BstAFI CTTAAG 1 cut(s) 902
BstBI TTCGAA 1 cut(s) 1202
BstDEI CTNAG 4 cut(s) 40, 449, 806, 1448
BstF5I GGATG 5 cut(s) 109, 824, 1027, 1063, 1084
BstFNI CGCG 1 cut(s) 1359
BstH2I RGCGCY 1 cut(s) 925
BstHHI GCGC 2 cut(s) 924, 1361
BstKTI GATC 7 cut(s) 159, 226, 555, 789, 901, 971, 1124
BstMAI GTCTC 1 cut(s) 1158
BstMBI GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
BstMWI GCNNNNNNNGC 6 cut(s) 36, 170, 179, 350, 874, 919
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 881
BstPAI GACNNNNGTC 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 2 cut(s) 667, 1040
BstUI CGCG 1 cut(s) 1359
BstV1I GCAGC 3 cut(s) 284, 379, 667
BstV2I GAAGAC 2 cut(s) 22, 1053
BstX2I RGATCY 2 cut(s) 898, 968
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 2 cut(s) 898, 968
Bsu36I CCTNAGG 1 cut(s) 449
BsuI GTATCC 1 cut(s) 1299
BsuRI GGCC 4 cut(s) 189, 344, 531, 631
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 5 cut(s) 109, 824, 1027, 1063, 1084
BtsIMutI CAGTG 2 cut(s) 458, 1423
BveI ACCTGC 2 cut(s) 1113, 1337
CfoI GCGC 2 cut(s) 924, 1361
Cfr13I GGNCC 3 cut(s) 243, 1337, 1349
CseI GACGC 1 cut(s) 153
Csp6I GTAC 4 cut(s) 318, 589, 835, 843
CviAII CATG 4 cut(s) 592, 676, 878, 883
CviQI GTAC 4 cut(s) 318, 589, 835, 843
DdeI CTNAG 4 cut(s) 40, 449, 806, 1448
DpnI GATC 7 cut(s) 158, 225, 554, 788, 900, 970, 1123
DpnII GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
DraI TTTAAA 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 345, 611
Eco147I AGGCCT 1 cut(s) 189
Eco24I GRGCYC 2 cut(s) 438, 1188
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 3 cut(s) 243, 1337, 1349
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 196, 588
Eco81I CCTNAGG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 1349
EcoRII CCWGG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 345, 611
EcoT38I GRGCYC 2 cut(s) 438, 1188
ErhI CCWWGG 2 cut(s) 345, 611
FaeI CATG 4 cut(s) 595, 679, 881, 886
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 4 cut(s) 591, 675, 877, 882
FauI CCCGC 1 cut(s) 1249
FauNDI CATATG 3 cut(s) 10, 329, 1396
Fnu4HI GCNGC 3 cut(s) 273, 393, 681
FokI GGATG 5 cut(s) 116, 811, 1034, 1070, 1091
FriOI GRGCYC 2 cut(s) 438, 1188
Fsp4HI GCNGC 3 cut(s) 273, 393, 681
FspBI CTAG 3 cut(s) 174, 732, 1143
GlaI GCGC 2 cut(s) 923, 1360
GluI GCNGC 3 cut(s) 273, 393, 681
HaeII RGCGCY 1 cut(s) 925
HaeIII GGCC 4 cut(s) 189, 344, 531, 631
HapII CCGG 4 cut(s) 27, 246, 658, 1181
HgaI GACGC 1 cut(s) 153
HhaI GCGC 2 cut(s) 924, 1361
Hin1II CATG 4 cut(s) 595, 679, 881, 886
Hin6I GCGC 2 cut(s) 922, 1359
HinP1I GCGC 2 cut(s) 922, 1359
HincII GTYRAC 1 cut(s) 251
HindII GTYRAC 1 cut(s) 251
HinfI GANTC 5 cut(s) 201, 280, 371, 649, 749
HpaII CCGG 4 cut(s) 27, 246, 658, 1181
HphI GGTGA 4 cut(s) 700, 1119, 1264, 1356
Hpy166II GTNNAC 5 cut(s) 251, 370, 835, 1421, 1427
Hpy188I TCNGA 4 cut(s) 602, 786, 807, 874
Hpy188III TCNNGA 8 cut(s) 227, 507, 646, 658, 741, 1116, 1181, 1386
Hpy8I GTNNAC 5 cut(s) 251, 370, 835, 1421, 1427
HpyAV CCTTC 5 cut(s) 220, 712, 1122, 1209, 1302
HpyCH4III ACNGT 3 cut(s) 312, 671, 1368
HpyCH4IV ACGT 2 cut(s) 19, 1423
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 170, 179, 350, 874, 919
HpyF3I CTNAG 4 cut(s) 40, 449, 806, 1448
HpySE526I ACGT 2 cut(s) 19, 1423
Hsp92II CATG 4 cut(s) 595, 679, 881, 886
HspAI GCGC 2 cut(s) 922, 1359
Kpn2I TCCGGA 2 cut(s) 657, 1180
Kzo9I GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
LmnI GCTCC 2 cut(s) 886, 1183
Lsp1109I GCAGC 3 cut(s) 284, 379, 667
LweI GCATC 6 cut(s) 53, 191, 313, 718, 811, 900
MaeI CTAG 3 cut(s) 174, 732, 1143
MaeII ACGT 2 cut(s) 19, 1423
MaeIII GTNAC 5 cut(s) 165, 427, 671, 809, 980
MalI GATC 7 cut(s) 158, 225, 554, 788, 900, 970, 1123
MbiI CCGCTC 1 cut(s) 761
MboI GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
MboII GAAGA 8 cut(s) 27, 39, 277, 547, 581, 908, 1058, 1131
MflI RGATCY 2 cut(s) 898, 968
MhlI GDGCHC 2 cut(s) 438, 1188
MluCI AATT 6 cut(s) 375, 547, 606, 778, 999, 1164
MlyI GAGTC 2 cut(s) 195, 365
MroI TCCGGA 2 cut(s) 657, 1180
MroXI GAANNNNTTC 1 cut(s) 653
MseI TTAA 7 cut(s) 294, 585, 708, 776, 903, 1236, 1453
MslI CAYNNNNRTG 3 cut(s) 365, 401, 1013
MspCI CTTAAG 1 cut(s) 902
MspI CCGG 4 cut(s) 27, 246, 658, 1181
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 1359
MwoI GCNNNNNNNGC 6 cut(s) 36, 170, 179, 350, 874, 919
NdeI CATATG 3 cut(s) 10, 329, 1396
NdeII GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
NlaIII CATG 4 cut(s) 595, 679, 881, 886
NlaIV GGNNCC 1 cut(s) 1185
NmuCI GTSAC 3 cut(s) 165, 671, 980
NspI RCATGY 1 cut(s) 881
NspV TTCGAA 1 cut(s) 1202
PceI AGGCCT 1 cut(s) 189
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 3 cut(s) 280, 649, 749
PflMI CCANNNNNTGG 1 cut(s) 1334
PkrI GCNGC 3 cut(s) 274, 394, 682
PleI GAGTC 2 cut(s) 195, 365
PpsI GAGTC 2 cut(s) 195, 365
PpuMI RGGWCCY 1 cut(s) 1349
PshAI GACNNNNGTC 1 cut(s) 205
PshBI ATTAAT 2 cut(s) 708, 1236
Psp124BI GAGCTC 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 1349
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 1185
PspPI GGNCC 3 cut(s) 243, 1337, 1349
PspPPI RGGWCCY 1 cut(s) 1349
PsuI RGATCY 2 cut(s) 898, 968
RsaI GTAC 4 cut(s) 319, 590, 836, 844
RsaNI GTAC 4 cut(s) 318, 589, 835, 843
RseI CAYNNNNRTG 3 cut(s) 365, 401, 1013
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 7 cut(s) 294, 585, 708, 776, 903, 1236, 1453
SatI GCNGC 3 cut(s) 273, 393, 681
Sau3AI GATC 7 cut(s) 156, 223, 552, 786, 898, 968, 1121
Sau96I GGNCC 3 cut(s) 243, 1337, 1349
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 2 cut(s) 195, 365
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 438, 1188
SfaNI GCATC 6 cut(s) 53, 191, 313, 718, 811, 900
SfcI CTRYAG 2 cut(s) 667, 1040
SfuI TTCGAA 1 cut(s) 1202
SinI GGWCC 3 cut(s) 243, 1337, 1349
SmiMI CAYNNNNRTG 3 cut(s) 365, 401, 1013
SmlI CTYRAG 4 cut(s) 227, 838, 902, 1384
SmoI CTYRAG 4 cut(s) 227, 838, 902, 1384
Sse9I AATT 6 cut(s) 375, 547, 606, 778, 999, 1164
SseBI AGGCCT 1 cut(s) 189
SsiI CCGC 3 cut(s) 761, 866, 1242
SspMI CTAG 3 cut(s) 174, 732, 1143
SstI GAGCTC 1 cut(s) 438
StuI AGGCCT 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 345, 611
TaaI ACNGT 3 cut(s) 312, 671, 1368
TaiI ACGT 2 cut(s) 22, 1426
TaqI TCGA 4 cut(s) 126, 819, 1202, 1378
TasI AATT 6 cut(s) 375, 547, 606, 778, 999, 1164
TatI WGTACW 4 cut(s) 317, 588, 834, 842
TfiI GAWTC 3 cut(s) 280, 649, 749
Tru1I TTAA 7 cut(s) 294, 585, 708, 776, 903, 1236, 1453
Tru9I TTAA 7 cut(s) 294, 585, 708, 776, 903, 1236, 1453
TscAI CASTG 2 cut(s) 465, 1423
TseFI GTSAC 3 cut(s) 165, 671, 980
TseI GCWGC 3 cut(s) 272, 392, 680
Tsp45I GTSAC 3 cut(s) 165, 671, 980
TspDTI ATGAA 6 cut(s) 17, 64, 588, 909, 972, 1074
TspGWI ACGGA 2 cut(s) 102, 1214
TspRI CASTG 2 cut(s) 465, 1423
Van91I CCANNNNNTGG 1 cut(s) 1334
Vha464I CTTAAG 1 cut(s) 902
VpaK11BI GGWCC 3 cut(s) 243, 1337, 1349
VspI ATTAAT 2 cut(s) 708, 1236
XapI RAATTY 4 cut(s) 547, 606, 778, 1164
XceI RCATGY 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 3 cut(s) 174, 732, 1143
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.