Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009504

Physical Location & Seq

Genomic Coordinates Reverse (-)

21427827 .. 21429495

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAAGCTCTTACCTTTATGAAATTCTGGTTAACCAACAACACAACCATCAAACCTCGCCGTGAAATCAGAATCTCAGAATCCGCCGTCGATTCCACCACCGGATCAGAAGATCCCGACCTTGACCTCTGCGAAGGAGAGGATTCCTTCTTCGAGCTCAAGATCTCTCTCTCGGATTTCAAAACACCTAAAGAAAAACAGAGACTCGAAACAACAACAACAACAACAACGTACTCTGTTTCTAACAAAAGCAAAGTCCTTCCTTTCGTTGATATCTCTTCAAAACCCCAACAATCTCCGACCACTCTTTTGAAATCCGGTCAAAAGTTTCGTGCTTTCTCATTCAAGAAGTCAGAAAAGTCAACGACGACTGAGAAGAAGAAAGAAGAAAACAACCGAACTAGTCTCAACGTAAGATTCAGAGTCGACGATGAAACAACAACAACAAGTTTCAGAAAAACAGCAAGCATTGCGAGATCACAACAAACAGACGACACGATGTTCGACGACTCTGTTTCAAAGAGATTCTTCAGTCTCATTAAACCTTTGTACACTAAATCAACGAAGAAGCAGTCATCGTCGACGATTACATCTCCGACGTCTTCACCGGCGACGAGAGAGAAACAGAGGAGTAATATTCCGTCGGGGATGAGAAGTGTGAGGAGACAACTTGGGAAGAGTCGGTCAGCTTCTGCGGCGATCGGAGGAATGTCTCCGGCGAACAGAATCGATGAGTCTTTACAAGTTCAACAAGATGGGATTCAAAGTGCGATTCTTCATTGCAAGAAATCGTTTCATGGCTCGAGAGAATCTTCTCTGTTATCACGATCTACGAGTGAATCTTCTTCACAAGAGAAACTTAGTACTTCGTCGTCTGAAGATTCTTATTTGTTTTCAAGGATTTCAAGTGATTCAATTTCGGAGAAATCAATGGATAGCTTGACTTCAATTAAGGAACAGAGGGAGAAGATTAGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

36.49

Weight (kDa)

9.52

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52870 AT5G52870
fragaria_vesca	FvH4_7g30580 FvH4_7g30580 FvH4_7g30580
malus_domestica	MD01G1211000.v1.1 MD07G1281700.v1.1 MD07G1281800.v1.1
prunus_persica	Prupe.2G303400_v2.0.a1
pyrus_communis	pycom01g22150 pycom07g25570
rosa_chinensis	RchiOBHm_Chr1g0379481
rosa_laevigata	RLG00000026399
rosa_multiflora	Rmu_sc0006761.1_g000016
rosa_roxburghii	Rroxscaffold_4G00280170
rosa_rugosa	Rorug01G0412000 Rorug01G0412100
rosa_samantha	Rh1AG434600 Rh1BG392400 Rh1CG405000 Rh1DG423200
rosa_wichuraiana	Rw1G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	602
AccI	GTMKAC	2 cut(s)	426, 581
AciI	CCGC	2 cut(s)	84, 695
AclWI	GGATC	2 cut(s)	107, 112
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	2 cut(s)	514, 897
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	3 cut(s)	233, 551, 865
AhlI	ACTAGT	1 cut(s)	401
AluBI	AGCT	4 cut(s)	8, 157, 689, 939
AluI	AGCT	4 cut(s)	8, 157, 689, 939
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	5 cut(s)	196, 410, 539, 658, 717
AlwI	GGATC	2 cut(s)	107, 112
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	802
ApoI	RAATTY	1 cut(s)	23
ArsI	GACNNNNNNTTYG	8 cut(s)	240, 272, 292, 324, 485, 517, 557, 589
AsuHPI	GGTGA	1 cut(s)	597
AvaI	CYCGRG	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	2 cut(s)	56, 749
BceAI	ACGGC	2 cut(s)	45, 71
BcoDI	GTCTC	5 cut(s)	196, 410, 539, 658, 717
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	1 cut(s)	402
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
BmcAI	AGTACT	1 cut(s)	865
BmeT110I	CYCGRG	1 cut(s)	802
BpiI	GAAGAC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	599
BsaWI	WCCGGW	2 cut(s)	101, 317
Bse118I	RCCGGY	1 cut(s)	607
Bse3DI	GCAATG	2 cut(s)	468, 778
BseCI	ATCGAT	1 cut(s)	729
BseGI	GGATG	1 cut(s)	654
BseMI	GCAATG	2 cut(s)	468, 778
BseMII	CTCAG	2 cut(s)	90, 363
BseRI	GAGGAG	2 cut(s)	643, 676
Bsh1285I	CGRYCG	1 cut(s)	702
BshVI	ATCGAT	1 cut(s)	729
BsiEI	CGRYCG	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	802
BsiSI	CCGG	4 cut(s)	102, 318, 608, 716
BsmAI	GTCTC	5 cut(s)	196, 410, 539, 658, 717
BsoBI	CYCGRG	1 cut(s)	802
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
BspACI	CCGC	2 cut(s)	84, 695
BspCNI	CTCAG	2 cut(s)	89, 364
BspDI	ATCGAT	1 cut(s)	729
BspPI	GGATC	2 cut(s)	107, 112
BsrDI	GCAATG	2 cut(s)	468, 778
BsrFI	RCCGGY	1 cut(s)	607
BsrGI	TGTACA	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	607
BssMI	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
BssNI	GRCGYC	1 cut(s)	599
Bst6I	CTCTTC	2 cut(s)	283, 671
BstACI	GRCGYC	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	76, 372, 860
BstF5I	GGATG	1 cut(s)	654
BstKTI	GATC	6 cut(s)	107, 115, 165, 479, 702, 830
BstMAI	GTCTC	5 cut(s)	196, 410, 539, 658, 717
BstMBI	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
BstMCI	CGRYCG	1 cut(s)	702
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 695
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	2 cut(s)	112, 162
BstYI	RGATCY	2 cut(s)	112, 162
Bsu15I	ATCGAT	1 cut(s)	729
BsuTUI	ATCGAT	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	654
Cac8I	GCNNGC	1 cut(s)	466
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr10I	RCCGGY	1 cut(s)	607
ClaI	ATCGAT	1 cut(s)	729
Csp6I	GTAC	3 cut(s)	232, 550, 864
CviAII	CATG	1 cut(s)	797
CviJI	RGCY	5 cut(s)	8, 157, 689, 801, 939
CviKI_1	RGCY	5 cut(s)	8, 157, 689, 801, 939
CviQI	GTAC	3 cut(s)	232, 550, 864
DdeI	CTNAG	3 cut(s)	76, 372, 860
DpnI	GATC	6 cut(s)	106, 114, 164, 478, 701, 829
DpnII	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
Eam1104I	CTCTTC	2 cut(s)	283, 671
EarI	CTCTTC	2 cut(s)	283, 671
EciI	GGCGGA	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	514, 897
Eco88I	CYCGRG	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	800
FaiI	YATR	2 cut(s)	20, 798
FalI	AAGNNNNNCTT	4 cut(s)	512, 544, 843, 875
FatI	CATG	1 cut(s)	796
FblI	GTMKAC	2 cut(s)	426, 581
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	696
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	1 cut(s)	696
HapII	CCGG	4 cut(s)	102, 318, 608, 716
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	1 cut(s)	800
HincII	GTYRAC	4 cut(s)	33, 363, 427, 582
HindII	GTYRAC	4 cut(s)	33, 363, 427, 582
HpaI	GTTAAC	1 cut(s)	33
HpaII	CCGG	4 cut(s)	102, 318, 608, 716
HphI	GGTGA	1 cut(s)	597
Hpy166II	GTNNAC	5 cut(s)	33, 363, 427, 552, 582
Hpy188III	TCNNGA	5 cut(s)	116, 160, 346, 804, 825
Hpy8I	GTNNAC	5 cut(s)	33, 363, 427, 552, 582
HpyAV	CCTTC	3 cut(s)	128, 157, 269
HpyCH4IV	ACGT	3 cut(s)	230, 411, 599
HpyCH4V	TGCA	1 cut(s)	783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 695
HpyF3I	CTNAG	3 cut(s)	76, 372, 860
HpySE526I	ACGT	3 cut(s)	230, 411, 599
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	1 cut(s)	800
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
LpnPI	CCDG	5 cut(s)	13, 115, 331, 621, 729
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	3 cut(s)	230, 411, 599
MalI	GATC	6 cut(s)	106, 114, 164, 478, 701, 829
MboI	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
MflI	RGATCY	2 cut(s)	112, 162
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	23, 915, 948
MlyI	GAGTC	5 cut(s)	198, 432, 503, 688, 743
MmeI	TCCRAC	2 cut(s)	323, 620
MnlI	CCTC	7 cut(s)	66, 133, 137, 621, 654, 698, 954
MseI	TTAA	3 cut(s)	32, 540, 951
MspI	CCGG	4 cut(s)	102, 318, 608, 716
MwoI	GCNNNNNNNGC	2 cut(s)	470, 695
NdeII	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
NlaIII	CATG	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	802
PkrI	GCNGC	1 cut(s)	697
Ple19I	CGATCG	1 cut(s)	702
PleI	GAGTC	5 cut(s)	198, 431, 503, 687, 742
PpsI	GAGTC	5 cut(s)	198, 431, 503, 687, 742
Psp124BI	GAGCTC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	112, 162
PvuI	CGATCG	1 cut(s)	702
RsaI	GTAC	3 cut(s)	233, 551, 865
RsaNI	GTAC	3 cut(s)	232, 550, 864
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	2 cut(s)	425, 580
SaqAI	TTAA	3 cut(s)	32, 540, 951
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	6 cut(s)	104, 112, 162, 476, 699, 827
ScaI	AGTACT	1 cut(s)	865
SchI	GAGTC	5 cut(s)	198, 432, 503, 688, 743
SduI	GDGCHC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	802
SgrAI	CRCCGGYG	1 cut(s)	607
SgrDI	CGTCGACG	1 cut(s)	580
SlaI	CTCGAG	1 cut(s)	802
SmlI	CTYRAG	2 cut(s)	158, 802
SmoI	CTYRAG	2 cut(s)	158, 802
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	3 cut(s)	23, 915, 948
SsiI	CCGC	2 cut(s)	84, 695
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	159
TaiI	ACGT	3 cut(s)	233, 414, 602
TaqI	TCGA	8 cut(s)	90, 153, 207, 426, 504, 581, 729, 803
TaqII	GACCGA	1 cut(s)	672
TasI	AATT	3 cut(s)	23, 915, 948
TatI	WGTACW	2 cut(s)	549, 863
TauI	GCSGC	1 cut(s)	698
Tru1I	TTAA	3 cut(s)	32, 540, 951
Tru9I	TTAA	3 cut(s)	32, 540, 951
TspDTI	ATGAA	4 cut(s)	35, 447, 767, 785
TspGWI	ACGGA	1 cut(s)	630
XapI	RAATTY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	802
XmiI	GTMKAC	2 cut(s)	426, 581
XspI	CTAG	1 cut(s)	402
ZraI	GACGTC	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.