Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009504

Physical Location & Seq

Genomic Coordinates Reverse (-)

65571588 .. 65573306

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGACTCTGTACTTTCTTAAGTTCTGGAAACCCAATCCTTCTCCCATTGCAATTCCCAGTCCTTTGGTAGAAACAGACAACGAATTTGAGGTGGAAGAGGAGGAAGAGGAAGACTCGTTCTTCGATTTGGAGATTAGTACAGAATCAAACACCAAAACCCACGAGGAAAGTTCGAAGCTTTACTCAAAAGAAGCCAAAACAGAACCAACCCTTTCTGTTCCTCCTCCTCCTTCTGATCCAATTTCCAAAAGGAAAATCCTCCCAATTGAACCCATTTCCAAGCCTCAGTCCCCCATTGCTCTACTCAAATCAGCTCCAAAGTTTGGGGTGTCGATTTTCAAAAAACCCAAATCAGCTTCAACTAAGAAGACAGAGAAAACAGGGGAAACAGAGTCCAGCATTTTGATGGAGACCCAGAAGCAGAAAAAGCCAGAAGCCATAAGCAATGAAGCTTCATGCCCTTCTAAGCTGACCAGGGACAACAGTTCGAGAAAAACTGGAAGGATATTGCAGAGCCAGAGCTCCGATGATTCGAAAACAGAGCGGTTTTCAAAGGATGTGATAAACAAGTACCTGAAGCTAATCAAGCCTCTGTACTTGAAAGTTTCCAGGAGGTACAGTGACAAGGTGAAGGTTTCCGGCGACTTGCCGATGGCATCGCCGACGTCGTCGCCGGCGGTGTCTATGTACTCCCCTAGGAAGGAGAGGCAGGGGAATATTCCTGCCGGGATTCGAGTTGTTTGTAAGCATCTTGGGAAGAGCAAGTCGGCCACGGCGGCGATGGCGGTGGTGCCGCCGGTGAACCGGAGAGACGACTCGCTGGTGCTTCAAGCAGATGGGATTCAGAGCGCCATTCTGCATTGCAAGAGATCATTCAATTCTAGAGATTCTTCTTGCCTATCAAGATCAACAAGTTGGACTAGTTCGTCCATGAACTCATATTCTAGTGGTAAGAATCACTCTCCTTGTTTACAAATTTCAAAACAGATGTGTGATTACAGCAAGAAAAAGTCTCTTATTTTTTTTATTTCATTTGCAGATTCTTCTATGCTATCACGGTTTGCGATCGAATCCCATGAGAGATCTGCGAGAAGCTCCATAGAGGAAGAGCTAGCATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

41.76

Weight (kDa)

9.21

Isoelectric Point (pI)

76.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52870 AT5G52870
fragaria_vesca	FvH4_7g30580 FvH4_7g30580 FvH4_7g30580
malus_domestica	MD01G1211000.v1.1 MD07G1281700.v1.1 MD07G1281800.v1.1
prunus_persica	Prupe.2G303400_v2.0.a1
pyrus_communis	pycom01g22150 pycom07g25570
rosa_chinensis	RchiOBHm_Chr1g0379481
rosa_laevigata	RLG00000026399
rosa_multiflora	Rmu_sc0006761.1_g000016
rosa_roxburghii	Rroxscaffold_4G00280170
rosa_rugosa	Rorug01G0412000 Rorug01G0412100
rosa_samantha	Rh1AG434600 Rh1BG392400 Rh1CG405000 Rh1DG423200
rosa_wichuraiana	Rw1G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	928
AatII	GACGTC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	793
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	547
AciI	CCGC	5 cut(s)	547, 680, 779, 788, 797
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	2 cut(s)	86, 978
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	6 cut(s)	14, 142, 575, 599, 620, 692
AfiI	CCNNNNNNNGG	2 cut(s)	326, 703
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	8 cut(s)	272, 343, 363, 555, 604, 833, 880, 984
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	2 cut(s)	476, 611
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	9 cut(s)	181, 317, 359, 455, 472, 525, 583, 1098, 1114
AluI	AGCT	9 cut(s)	181, 317, 359, 455, 472, 525, 583, 1098, 1114
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	3 cut(s)	407, 807, 1020
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	771
ApoI	RAATTY	2 cut(s)	86, 978
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 103, 107, 139
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	854
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	2 cut(s)	643, 814
AsuII	TTCGAA	2 cut(s)	176, 536
AsuNHI	GCTAGC	1 cut(s)	1114
AvrII	CCTAGG	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	793
BanII	GRGCYC	1 cut(s)	527
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	2 cut(s)	120, 377
Bbv12I	GWGCWC	1 cut(s)	527
BccI	CCATC	4 cut(s)	403, 649, 778, 833
BceAI	ACGGC	1 cut(s)	792
BciT130I	CCWGG	2 cut(s)	478, 613
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	3 cut(s)	407, 807, 1020
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	5 cut(s)	699, 885, 924, 948, 1115
BfoI	RGCGCY	1 cut(s)	855
BfrI	CTTAAG	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	779
BglII	AGATCT	1 cut(s)	1085
BisI	GCNGC	2 cut(s)	780, 797
BlnI	CCTAGG	1 cut(s)	698
BlsI	GCNGC	2 cut(s)	781, 798
Bme1390I	CCNGG	3 cut(s)	478, 613, 730
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	3 cut(s)	478, 613, 730
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	668, 760
BmtI	GCTAGC	1 cut(s)	1118
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	2 cut(s)	120, 377
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu14I	TTCGAA	2 cut(s)	176, 536
BpuMI	CCSGG	1 cut(s)	730
BsaHI	GRCGYC	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	477, 698, 774
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 607, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 703
Bse118I	RCCGGY	2 cut(s)	676, 799
Bse1I	ACTGG	2 cut(s)	60, 505
Bse3DI	GCAATG	4 cut(s)	48, 297, 454, 862
BseBI	CCWGG	2 cut(s)	478, 613
BseDI	CCNNGG	3 cut(s)	477, 698, 774
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	326, 703
BseMI	GCAATG	4 cut(s)	48, 297, 454, 862
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	60, 505
BseRI	GAGGAG	3 cut(s)	116, 216, 219
Bsh1285I	CGRYCG	1 cut(s)	1071
BshFI	GGCC	1 cut(s)	773
BshNI	GGYRCC	1 cut(s)	793
BsiEI	CGRYCG	1 cut(s)	1071
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	5 cut(s)	642, 677, 729, 800, 808
BslFI	GGGAC	2 cut(s)	277, 494
BslI	CCNNNNNNNGG	2 cut(s)	326, 703
BsmAI	GTCTC	3 cut(s)	407, 807, 1020
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	2 cut(s)	277, 494
BsnI	GGCC	1 cut(s)	773
Bso31I	GGTCTC	1 cut(s)	407
Bsp119I	TTCGAA	2 cut(s)	176, 536
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	5 cut(s)	238, 872, 908, 1068, 1085
BspACI	CCGC	5 cut(s)	547, 680, 779, 788, 797
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	795
BspOI	GCTAGC	1 cut(s)	1118
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	2 cut(s)	755, 1104
BspT104I	TTCGAA	2 cut(s)	176, 536
BspT107I	GGYRCC	1 cut(s)	793
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	547
BsrDI	GCAATG	4 cut(s)	48, 297, 454, 862
BsrFI	RCCGGY	2 cut(s)	676, 799
BsrI	ACTGG	2 cut(s)	60, 505
BssAI	RCCGGY	2 cut(s)	676, 799
BssECI	CCNNGG	3 cut(s)	477, 698, 774
BssMI	GATC	5 cut(s)	238, 872, 908, 1068, 1085
BssNI	GRCGYC	1 cut(s)	668
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	698
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	478, 613
Bst4CI	ACNGT	3 cut(s)	488, 623, 1062
Bst6I	CTCTTC	4 cut(s)	93, 102, 755, 1104
BstACI	GRCGYC	1 cut(s)	668
BstAFI	CTTAAG	1 cut(s)	20
BstBI	TTCGAA	2 cut(s)	176, 536
BstC8I	GCNNGC	3 cut(s)	678, 1116, 1120
BstDEI	CTNAG	3 cut(s)	288, 366, 468
BstDSI	CCRYGG	1 cut(s)	774
BstF5I	GGATG	1 cut(s)	565
BstH2I	RGCGCY	1 cut(s)	855
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	5 cut(s)	241, 875, 911, 1071, 1088
BstMAI	GTCTC	3 cut(s)	407, 807, 1020
BstMBI	GATC	5 cut(s)	238, 872, 908, 1068, 1085
BstMCI	CGRYCG	1 cut(s)	1071
BstMWI	GCNNNNNNNGC	4 cut(s)	430, 589, 779, 785
BstNI	CCWGG	2 cut(s)	478, 613
BstNSI	RCATGY	1 cut(s)	1122
BstSCI	CCNGG	3 cut(s)	476, 611, 728
BstV2I	GAAGAC	2 cut(s)	120, 377
BstX2I	RGATCY	1 cut(s)	1085
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	1085
BsuRI	GGCC	1 cut(s)	773
BtgI	CCRYGG	1 cut(s)	774
BtgZI	GCGATG	2 cut(s)	645, 797
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	678, 1116, 1120
CfoI	GCGC	1 cut(s)	854
Cfr10I	RCCGGY	2 cut(s)	676, 799
Csp6I	GTAC	6 cut(s)	13, 141, 574, 598, 619, 691
CviAII	CATG	4 cut(s)	459, 934, 1079, 1119
CviQI	GTAC	6 cut(s)	13, 141, 574, 598, 619, 691
DdeI	CTNAG	3 cut(s)	288, 366, 468
DpnI	GATC	5 cut(s)	240, 874, 910, 1070, 1087
DpnII	GATC	5 cut(s)	238, 872, 908, 1068, 1085
DrdI	GACNNNNNNGTC	1 cut(s)	928
DseDI	GACNNNNNNGTC	1 cut(s)	928
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	4 cut(s)	93, 102, 755, 1104
EarI	CTCTTC	4 cut(s)	93, 102, 755, 1104
Ecl136II	GAGCTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	476, 611
EcoT14I	CCWWGG	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	698
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	4 cut(s)	462, 937, 1082, 1122
FaiI	YATR	9 cut(s)	443, 460, 689, 935, 943, 1052, 1080, 1103, 1120
FaqI	GGGAC	2 cut(s)	277, 494
FatI	CATG	4 cut(s)	458, 933, 1078, 1118
Fnu4HI	GCNGC	2 cut(s)	780, 797
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	2 cut(s)	780, 797
FspBI	CTAG	5 cut(s)	699, 885, 924, 948, 1115
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	2 cut(s)	780, 797
HaeII	RGCGCY	1 cut(s)	855
HaeIII	GGCC	1 cut(s)	773
HapII	CCGG	5 cut(s)	642, 677, 729, 800, 808
HhaI	GCGC	1 cut(s)	854
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	462, 937, 1082, 1122
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HindIII	AAGCTT	2 cut(s)	179, 453
HpaII	CCGG	5 cut(s)	642, 677, 729, 800, 808
HphI	GGTGA	2 cut(s)	643, 814
Hpy166II	GTNNAC	2 cut(s)	805, 974
Hpy188I	TCNGA	4 cut(s)	238, 529, 849, 1127
Hpy188III	TCNNGA	4 cut(s)	28, 492, 885, 906
Hpy8I	GTNNAC	2 cut(s)	805, 974
Hpy99I	CGWCG	3 cut(s)	670, 673, 676
HpyAV	CCTTC	6 cut(s)	51, 243, 474, 498, 628, 697
HpyCH4III	ACNGT	3 cut(s)	488, 623, 1062
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	5 cut(s)	53, 514, 862, 867, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	430, 589, 779, 785
HpyF3I	CTNAG	3 cut(s)	288, 366, 468
HpySE526I	ACGT	1 cut(s)	668
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	4 cut(s)	462, 937, 1082, 1122
HspAI	GCGC	1 cut(s)	852
KroI	GCCGGC	1 cut(s)	676
KroNI	GCCGGC	1 cut(s)	678
Kzo9I	GATC	5 cut(s)	238, 872, 908, 1068, 1085
LguI	GCTCTTC	2 cut(s)	755, 1104
LmnI	GCTCC	3 cut(s)	322, 530, 1103
LweI	GCATC	2 cut(s)	668, 760
MaeI	CTAG	5 cut(s)	699, 885, 924, 948, 1115
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	5 cut(s)	240, 874, 910, 1070, 1087
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	5 cut(s)	238, 872, 908, 1068, 1085
MboII	GAAGA	9 cut(s)	110, 115, 119, 125, 382, 772, 885, 1038, 1121
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	1085
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	6 cut(s)	54, 86, 243, 267, 880, 978
MlyI	GAGTC	3 cut(s)	110, 404, 812
MmeI	TCCRAC	1 cut(s)	899
MreI	CGCCGGCG	1 cut(s)	676
MroNI	GCCGGC	1 cut(s)	676
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	5 cut(s)	642, 677, 729, 800, 808
MspR9I	CCNGG	3 cut(s)	478, 613, 730
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	478, 613
MwoI	GCNNNNNNNGC	4 cut(s)	430, 589, 779, 785
NaeI	GCCGGC	1 cut(s)	678
NciI	CCSGG	1 cut(s)	730
NdeII	GATC	5 cut(s)	238, 872, 908, 1068, 1085
NgoMIV	GCCGGC	1 cut(s)	676
NheI	GCTAGC	1 cut(s)	1114
NlaIII	CATG	4 cut(s)	462, 937, 1082, 1122
NlaIV	GGNNCC	1 cut(s)	795
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	1 cut(s)	1122
NspV	TTCGAA	2 cut(s)	176, 536
PaeI	GCATGC	1 cut(s)	1122
PciSI	GCTCTTC	2 cut(s)	755, 1104
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	678
PfeI	GAWTC	8 cut(s)	146, 533, 733, 844, 890, 958, 1043, 1073
PflFI	GACNNNGTC	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	781, 798
Ple19I	CGATCG	1 cut(s)	1071
PleI	GAGTC	3 cut(s)	110, 403, 812
PpsI	GAGTC	3 cut(s)	110, 403, 812
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	476, 611
PspGI	CCWGG	2 cut(s)	476, 611
PspN4I	GGNNCC	1 cut(s)	795
PsuI	RGATCY	1 cut(s)	1085
PsyI	GACNNNGTC	1 cut(s)	670
PvuI	CGATCG	1 cut(s)	1071
RsaI	GTAC	6 cut(s)	14, 142, 575, 599, 620, 692
RsaNI	GTAC	6 cut(s)	13, 141, 574, 598, 619, 691
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	527
SapI	GCTCTTC	2 cut(s)	755, 1104
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	2 cut(s)	780, 797
Sau3AI	GATC	5 cut(s)	238, 872, 908, 1068, 1085
SchI	GAGTC	3 cut(s)	110, 404, 812
ScrFI	CCNGG	3 cut(s)	478, 613, 730
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	668, 760
SfuI	TTCGAA	2 cut(s)	176, 536
SgrAI	CRCCGGYG	2 cut(s)	676, 799
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	923
SphI	GCATGC	1 cut(s)	1122
Sse9I	AATT	6 cut(s)	54, 86, 243, 267, 880, 978
SsiI	CCGC	5 cut(s)	547, 680, 779, 788, 797
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	5 cut(s)	699, 885, 924, 948, 1115
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	3 cut(s)	476, 611, 728
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	3 cut(s)	488, 623, 1062
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	7 cut(s)	126, 176, 335, 491, 536, 736, 1071
TasI	AATT	6 cut(s)	54, 86, 243, 267, 880, 978
TatI	WGTACW	4 cut(s)	12, 140, 597, 690
TauI	GCSGC	2 cut(s)	782, 799
TfiI	GAWTC	8 cut(s)	146, 533, 733, 844, 890, 958, 1043, 1073
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	4 cut(s)	447, 465, 950, 1023
TspRI	CASTG	1 cut(s)	628
Tth111I	GACNNNGTC	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	20
XapI	RAATTY	2 cut(s)	86, 978
XbaI	TCTAGA	1 cut(s)	884
XceI	RCATGY	1 cut(s)	1122
XcmI	CCANNNNNNNNNTGG	2 cut(s)	406, 781
XmaJI	CCTAGG	1 cut(s)	698
XspI	CTAG	5 cut(s)	699, 885, 924, 948, 1115
ZraI	GACGTC	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.