Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009504

Physical Location & Seq

Genomic Coordinates Reverse (-)

30469916 .. 30471903

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1211000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAACTCTCTACTTCCTCAAGTTCTGGAAACCCAATGCCTCCACCGCCACACCTCCAAAATCTTCCGTAGCTAAAGAAAACGACGTCGAAGAAGAAGAAGAAGATTCTTTCTTCGACTTGGAATTAAGTTTCGACCTCATCCAAACCCCACAAGAAAACATCTTCGAATCCAAACCAAAATCAAACACCTCGGACAAAACAGCCGGCAAACCAACCCTTTCTGTGTCCACCTCCGATCCGATTTCCAAAAGAAAAATCCTCCCGATCGAGCCAGTTTCCAAGCCTCCTCAGTCCCCCATCGCTCTCCTTAAATCCGCCCCAAAGTTCGGAGCTTTAATGCTCAAAAAACCCAGACAGAAAACCGAGAAAAAAACAGGGGAAAAAGCAGAGCCGGAGGTTTCGATGGAGTCCCACAAGCAGAAAACCAAAGTAGTAATTGCGAAACAGCTCGCCGGAGAAGAGGCTCAAAACCCACCTAAGCTCACCCGAGAAAACAGCTCCATGAGAAGCGGAATCGGATTGCAGAATCCGAGGCTGGAAGACCCGAAAACAGAGAGATTTTCCAAGGATGTTTTGCAGAAGTACCTTAATCTGATCAAACCTCTGTACTCGAAGGTTTCCAGGAGGTCTACCGAGAAGGTGAAACCTTCTGTAGACTCACCGACGGCGTCGCCGGCGATGCCGATATTCTCTATGTGTTCGCCCAAAAAGGACAAACAGGGGAACTTTCCGGCGGGATTTAGAGTTGTCTCTAAGAACTTGGGGAAGAGCAAGTCGGCCACGGCGATGGTGGCGCCGCCGGTGCAACGGAGGGACGATTCCTTGCTGCTGCACAACGATGGGATTCAGAGCGCCATTCTGCATTGCAAGAGATCGTTCAACTCTAGAGATTCTTTGTCTTCGTTGTCACGATCAACCAGTGATTCCTCCTCTACGAAATCATATTCTACAGATTGTTCTCTGTTGTCGCGGTTTGCAAGTGAATCCCAGGACAAATCAGCAAGAAACTCGATCGAGGATGGGTACAGTGCTGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

38.35

Weight (kDa)

9.44

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52870 AT5G52870
fragaria_vesca	FvH4_7g30580 FvH4_7g30580 FvH4_7g30580
malus_domestica	MD01G1211000.v1.1 MD07G1281700.v1.1 MD07G1281800.v1.1
prunus_persica	Prupe.2G303400_v2.0.a1
pyrus_communis	pycom01g22150 pycom07g25570
rosa_chinensis	RchiOBHm_Chr1g0379481
rosa_laevigata	RLG00000026399
rosa_multiflora	Rmu_sc0006761.1_g000016
rosa_roxburghii	Rroxscaffold_4G00280170
rosa_rugosa	Rorug01G0412000 Rorug01G0412100
rosa_samantha	Rh1AG434600 Rh1BG392400 Rh1CG405000 Rh1DG423200
rosa_wichuraiana	Rw1G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	796
AccI	GTMKAC	2 cut(s)	632, 657
AccII	CGCG	1 cut(s)	973
AciI	CCGC	6 cut(s)	48, 318, 513, 737, 800, 973
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	780
AcyI	GRCGYC	3 cut(s)	87, 671, 797
AfaI	GTAC	3 cut(s)	587, 611, 1028
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	883
AjnI	CCWGG	2 cut(s)	623, 990
AluBI	AGCT	5 cut(s)	74, 335, 451, 484, 501
AluI	AGCT	5 cut(s)	74, 335, 451, 484, 501
Alw26I	GTCTC	1 cut(s)	757
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	2 cut(s)	829, 832
AspLEI	GCGC	2 cut(s)	799, 857
AsuHPI	GGTGA	3 cut(s)	478, 654, 655
AsuII	TTCGAA	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	2 cut(s)	549, 894
BbvI	GCAGC	2 cut(s)	816, 819
BccI	CCATC	5 cut(s)	308, 400, 784, 836, 1016
BceAI	ACGGC	2 cut(s)	684, 801
BcgI	CGANNNNNNTGC	2 cut(s)	993, 1027
BciT130I	CCWGG	2 cut(s)	625, 992
BclI	TGATCA	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	757
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	2 cut(s)	654, 951
BfoI	RGCGCY	2 cut(s)	800, 858
BisI	GCNGC	3 cut(s)	800, 830, 833
BlsI	GCNGC	3 cut(s)	801, 831, 834
Bme1390I	CCNGG	2 cut(s)	625, 992
BmeT110I	CYCGRG	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	798
BmrFI	CCNGG	2 cut(s)	625, 992
BmsI	GCATC	1 cut(s)	672
BpiI	GAAGAC	2 cut(s)	549, 894
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	5
BsaHI	GRCGYC	3 cut(s)	87, 671, 797
BsaJI	CCNNGG	5 cut(s)	192, 533, 567, 783, 990
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse118I	RCCGGY	3 cut(s)	206, 676, 802
Bse1I	ACTGG	2 cut(s)	275, 921
Bse3DI	GCAATG	1 cut(s)	865
BseBI	CCWGG	2 cut(s)	625, 992
BseDI	CCNNGG	5 cut(s)	192, 533, 567, 783, 990
BseGI	GGATG	3 cut(s)	141, 577, 1027
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	275, 921
BseRI	GAGGAG	2 cut(s)	279, 922
BseXI	GCAGC	2 cut(s)	816, 819
BsgI	GTGCAG	1 cut(s)	818
Bsh1236I	CGCG	1 cut(s)	973
Bsh1285I	CGRYCG	2 cut(s)	270, 1017
BshFI	GGCC	1 cut(s)	782
BshNI	GGYRCC	1 cut(s)	796
BsiEI	CGRYCG	2 cut(s)	270, 1017
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	6 cut(s)	207, 395, 456, 677, 734, 803
BslFI	GGGAC	3 cut(s)	280, 397, 830
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	757
BsmFI	GGGAC	3 cut(s)	280, 397, 830
BsnI	GGCC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	489
Bsp119I	TTCGAA	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
BspACI	CCGC	6 cut(s)	48, 318, 513, 737, 800, 973
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	973
BspLI	GGNNCC	1 cut(s)	798
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	764
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	796
BsrDI	GCAATG	1 cut(s)	865
BsrFI	RCCGGY	3 cut(s)	206, 676, 802
BsrI	ACTGG	2 cut(s)	275, 921
BssAI	RCCGGY	3 cut(s)	206, 676, 802
BssECI	CCNNGG	5 cut(s)	192, 533, 567, 783, 990
BssMI	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
BssNI	GRCGYC	3 cut(s)	87, 671, 797
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	625, 992
Bst4CI	ACNGT	1 cut(s)	1031
Bst6I	CTCTTC	2 cut(s)	456, 764
BstACI	GRCGYC	3 cut(s)	87, 671, 797
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	208, 453, 678
BstDEI	CTNAG	3 cut(s)	291, 480, 756
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	141, 577, 1027
BstFNI	CGCG	1 cut(s)	973
BstH2I	RGCGCY	2 cut(s)	800, 858
BstHHI	GCGC	2 cut(s)	799, 857
BstKTI	GATC	6 cut(s)	241, 270, 600, 878, 917, 1017
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
BstMCI	CGRYCG	2 cut(s)	270, 1017
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 677, 682, 794, 805
BstNI	CCWGG	2 cut(s)	625, 992
BstSCI	CCNGG	2 cut(s)	623, 990
BstSFI	CTRYAG	2 cut(s)	654, 951
BstUI	CGCG	1 cut(s)	973
BstV1I	GCAGC	2 cut(s)	816, 819
BstV2I	GAAGAC	2 cut(s)	549, 894
BstXI	CCANNNNNNTGG	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	783
BtgZI	GCGATG	3 cut(s)	286, 695, 803
BtsCI	GGATG	3 cut(s)	141, 577, 1027
BtsIMutI	CAGTG	2 cut(s)	928, 1036
Cac8I	GCNNGC	3 cut(s)	208, 453, 678
CfoI	GCGC	2 cut(s)	799, 857
Cfr10I	RCCGGY	3 cut(s)	206, 676, 802
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	3 cut(s)	586, 610, 1027
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	3 cut(s)	586, 610, 1027
DdeI	CTNAG	3 cut(s)	291, 480, 756
DinI	GGCGCC	1 cut(s)	798
DpnI	GATC	6 cut(s)	240, 269, 599, 877, 916, 1016
DpnII	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	456, 764
EarI	CTCTTC	2 cut(s)	456, 764
EciI	GGCGGA	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	623, 990
EcoT14I	CCWWGG	1 cut(s)	567
EgeI	GGCGCC	1 cut(s)	798
EheI	GGCGCC	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	1 cut(s)	508
FaiI	YATR	3 cut(s)	506, 698, 946
FaqI	GGGAC	3 cut(s)	280, 397, 830
FatI	CATG	1 cut(s)	504
FauI	CCCGC	1 cut(s)	730
FbaI	TGATCA	1 cut(s)	597
FblI	GTMKAC	2 cut(s)	632, 657
Fnu4HI	GCNGC	3 cut(s)	800, 830, 833
FokI	GGATG	3 cut(s)	128, 584, 1034
Fsp4HI	GCNGC	3 cut(s)	800, 830, 833
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	2 cut(s)	798, 856
GluI	GCNGC	3 cut(s)	800, 830, 833
HaeII	RGCGCY	2 cut(s)	800, 858
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	6 cut(s)	207, 395, 456, 677, 734, 803
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	2 cut(s)	799, 857
Hin1I	GRCGYC	3 cut(s)	87, 671, 797
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	797, 855
HinP1I	GCGC	2 cut(s)	797, 855
HpaII	CCGG	6 cut(s)	207, 395, 456, 677, 734, 803
HphI	GGTGA	3 cut(s)	478, 654, 655
Hpy166II	GTNNAC	3 cut(s)	231, 633, 658
Hpy188I	TCNGA	9 cut(s)	196, 238, 243, 332, 521, 534, 597, 852, 1043
Hpy188III	TCNNGA	4 cut(s)	28, 265, 888, 912
Hpy8I	GTNNAC	3 cut(s)	231, 633, 658
Hpy99I	CGWCG	4 cut(s)	89, 92, 670, 676
HpyAV	CCTTC	3 cut(s)	610, 634, 660
HpyCH4III	ACNGT	1 cut(s)	1031
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	7 cut(s)	526, 580, 808, 835, 865, 870, 980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 677, 682, 794, 805
HpyF3I	CTNAG	3 cut(s)	291, 480, 756
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	3 cut(s)	87, 671, 797
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	797, 855
KasI	GGCGCC	1 cut(s)	796
KroI	GCCGGC	2 cut(s)	206, 676
KroNI	GCCGGC	2 cut(s)	208, 678
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	2 cut(s)	332, 506
Lsp1109I	GCAGC	2 cut(s)	816, 819
LweI	GCATC	1 cut(s)	672
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	909
MalI	GATC	6 cut(s)	240, 269, 599, 877, 916, 1016
MboI	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
MluCI	AATT	2 cut(s)	125, 438
Mly113I	GGCGCC	1 cut(s)	797
MlyI	GAGTC	2 cut(s)	419, 653
MreI	CGCCGGCG	1 cut(s)	676
MroNI	GCCGGC	2 cut(s)	206, 676
MseI	TTAA	4 cut(s)	128, 312, 338, 591
MslI	CAYNNNNRTG	2 cut(s)	788, 840
MspI	CCGG	6 cut(s)	207, 395, 456, 677, 734, 803
MspR9I	CCNGG	2 cut(s)	625, 992
MvaI	CCWGG	2 cut(s)	625, 992
MvnI	CGCG	1 cut(s)	973
MwoI	GCNNNNNNNGC	5 cut(s)	47, 677, 682, 794, 805
NaeI	GCCGGC	2 cut(s)	208, 678
NarI	GGCGCC	1 cut(s)	797
NdeII	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
NgoMIV	GCCGGC	2 cut(s)	206, 676
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	798
NmuCI	GTSAC	1 cut(s)	909
NspV	TTCGAA	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	1 cut(s)	785
PdiI	GCCGGC	2 cut(s)	208, 678
PfeI	GAWTC	9 cut(s)	107, 170, 516, 529, 821, 847, 893, 926, 986
PflFI	GACNNNGTC	1 cut(s)	670
PfoI	TCCNGGA	1 cut(s)	623
PkrI	GCNGC	3 cut(s)	801, 831, 834
Ple19I	CGATCG	2 cut(s)	270, 1017
PleI	GAGTC	2 cut(s)	418, 653
PluTI	GGCGCC	1 cut(s)	800
PpsI	GAGTC	2 cut(s)	418, 653
Psp6I	CCWGG	2 cut(s)	623, 990
PspGI	CCWGG	2 cut(s)	623, 990
PspN4I	GGNNCC	1 cut(s)	798
PsyI	GACNNNGTC	1 cut(s)	670
PvuI	CGATCG	2 cut(s)	270, 1017
RsaI	GTAC	3 cut(s)	587, 611, 1028
RsaNI	GTAC	3 cut(s)	586, 610, 1027
RseI	CAYNNNNRTG	2 cut(s)	788, 840
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	4 cut(s)	128, 312, 338, 591
SatI	GCNGC	3 cut(s)	800, 830, 833
Sau3AI	GATC	6 cut(s)	238, 267, 597, 875, 914, 1014
SchI	GAGTC	2 cut(s)	419, 653
ScrFI	CCNGG	2 cut(s)	625, 992
SfaNI	GCATC	1 cut(s)	672
SfcI	CTRYAG	2 cut(s)	654, 951
SfoI	GGCGCC	1 cut(s)	798
SfuI	TTCGAA	1 cut(s)	168
SgrAI	CRCCGGYG	2 cut(s)	676, 802
SmiMI	CAYNNNNRTG	2 cut(s)	788, 840
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	125, 438
SsiI	CCGC	6 cut(s)	48, 318, 513, 737, 800, 973
SspDI	GGCGCC	1 cut(s)	796
SspMI	CTAG	1 cut(s)	888
StyD4I	CCNGG	2 cut(s)	623, 990
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	1031
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	9 cut(s)	90, 117, 135, 168, 270, 404, 614, 1013, 1017
TasI	AATT	2 cut(s)	125, 438
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	802
TfiI	GAWTC	9 cut(s)	107, 170, 516, 529, 821, 847, 893, 926, 986
Tru1I	TTAA	4 cut(s)	128, 312, 338, 591
Tru9I	TTAA	4 cut(s)	128, 312, 338, 591
TscAI	CASTG	2 cut(s)	928, 1036
TseFI	GTSAC	1 cut(s)	909
TseI	GCWGC	2 cut(s)	829, 832
Tsp45I	GTSAC	1 cut(s)	909
TspGWI	ACGGA	2 cut(s)	58, 826
TspRI	CASTG	2 cut(s)	928, 1036
Tth111I	GACNNNGTC	1 cut(s)	670
XbaI	TCTAGA	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmiI	GTMKAC	2 cut(s)	632, 657
XspI	CTAG	1 cut(s)	888
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.