Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009504

Physical Location & Seq

Genomic Coordinates Reverse (-)

22234670 .. 22236595

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30580.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGACTCTGTACTTTCTTAAGTTCTGGAAACCCAATCCTTCCACCATTGCAATCCCCAGTCCTCTGGTAGAAACAGACAATGAGTTTGAGGTGGAAGAGGAGGAAGAAGAAGACTCGTTCTTCGATTTGGAGATTAGTACAGAACCAAACACCAAAACCCATGAAGAAAGTTCCAAGCTTTACTCAAAAGAAGCCAAAACAGAACCAACCCTTATTGTTCCTTCTCCTTCTGATTCAATCTCCAAAAGGAAAGTCCTCCCAATTGAACCCATTTCCAAGCCTCAGTCCCCCATTGCTCTACTCAAATCAGCTCCCAAGTTTGGGGTTTCGATTTTCAAAAAACCCAAATCAGCTTCAGCTAAGAAAGCAGAGAAAAGTACTCTGTTTTCTGAGAAAACAGGGGAAACAGAGTCCAGCATTTTGGTGGAGACCCAGAAGCAGAAACAGCCAGAGGTCAAAAGGAATGAAGCTTCAAGCCCTTCTAAGCTGACCAGAGAAAACAGTTCAAGGAAAATTGGAAGCAATATGCAGAACCAGAGCTCTGACTATTTGAAAACAGAGCGGTTTTCGAAAGATGTGATCAACAAGTACCTGAAGCTAATCAAGCCTCTGTACTTGAAAGTTTCCAAGAGGTACGGTGACAAGGTGAAAGTTTCCGGCGACTTGCCGATGGCATCGCCGGCGTCGTCGCCGGCAGTGTCTATGTGCTCGCCGAGGAAGGAGAAGCAGGGGAACATTCCTGCCGGGATTCGAGTTGTTTGTAAGCATCTTGGGAAGAGCAAGTCGGCCACGGCGGCGGTGGCTGTGGCGTCTCCGGTGAACCGGAGAGACGACTCGCTGTTACTTCAAGCAGATGGGATACAGAGCGCCATTCTTCATTGCAAGAGATCATTCAATTCTAGAGATTCTTCTTGCCTATCAAGATCAACCAGTTGGACTAGTTCATCCATCAACTCATATTCTAGTGATTCTTCTATGTTATCAAGGTTTGCGATCGAATCCCATGAGAGATCTGCCAGAAGCTCCATAGAGGAAGAGCTTGCATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

38.86

Weight (kDa)

9.11

Isoelectric Point (pI)

72.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52870 AT5G52870
fragaria_vesca	FvH4_7g30580 FvH4_7g30580 FvH4_7g30580
malus_domestica	MD01G1211000.v1.1 MD07G1281700.v1.1 MD07G1281800.v1.1
prunus_persica	Prupe.2G303400_v2.0.a1
pyrus_communis	pycom01g22150 pycom07g25570
rosa_chinensis	RchiOBHm_Chr1g0379481
rosa_laevigata	RLG00000026399
rosa_multiflora	Rmu_sc0006761.1_g000016
rosa_roxburghii	Rroxscaffold_4G00280170
rosa_rugosa	Rorug01G0412000 Rorug01G0412100
rosa_samantha	Rh1AG434600 Rh1BG392400 Rh1CG405000 Rh1DG423200
rosa_wichuraiana	Rw1G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	565
AciI	CCGC	3 cut(s)	565, 797, 800
AcoI	YGGCCR	1 cut(s)	789
AcuI	CTGAAG	2 cut(s)	342, 617
AcyI	GRCGYC	2 cut(s)	686, 812
AfaI	GTAC	6 cut(s)	14, 142, 382, 593, 617, 638
AfiI	CCNNNNNNNGG	2 cut(s)	323, 324
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	9 cut(s)	240, 269, 340, 477, 510, 556, 622, 851, 898
AhlI	ACTAGT	1 cut(s)	941
Alw21I	GWGCWC	2 cut(s)	545, 713
Alw26I	GTCTC	3 cut(s)	425, 819, 825
AoxI	GGCC	1 cut(s)	789
ArsI	GACNNNNNNTTYG	6 cut(s)	71, 103, 107, 139, 240, 272
AspLEI	GCGC	1 cut(s)	872
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	3 cut(s)	653, 661, 832
AsuII	TTCGAA	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	2 cut(s)	545, 713
BccI	CCATC	3 cut(s)	667, 851, 959
BceAI	ACGGC	1 cut(s)	810
BciVI	GTATCC	1 cut(s)	855
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	3 cut(s)	425, 819, 825
BcuI	ACTAGT	1 cut(s)	941
BfaI	CTAG	3 cut(s)	903, 942, 966
BfoI	RGCGCY	1 cut(s)	873
BfrI	CTTAAG	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	855
BglI	GCCNNNNNGGC	1 cut(s)	797
BglII	AGATCT	1 cut(s)	1013
BisI	GCNGC	1 cut(s)	798
BlsI	GCNGC	1 cut(s)	799
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	748
BmrFI	CCNGG	1 cut(s)	748
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	686, 778
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	748
BsaHI	GRCGYC	2 cut(s)	686, 812
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	2 cut(s)	716, 792
BsaWI	WCCGGW	2 cut(s)	817, 825
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 324
Bse118I	RCCGGY	2 cut(s)	682, 694
Bse1I	ACTGG	2 cut(s)	60, 933
Bse3DI	GCAATG	3 cut(s)	48, 294, 880
BseDI	CCNNGG	2 cut(s)	716, 792
BseGI	GGATG	1 cut(s)	947
BseLI	CCNNNNNNNGG	2 cut(s)	323, 324
BseMI	GCAATG	3 cut(s)	48, 294, 880
BseMII	CTCAG	2 cut(s)	299, 384
BseNI	ACTGG	2 cut(s)	60, 933
BseRI	GAGGAG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	999
BshFI	GGCC	1 cut(s)	791
BsiEI	CGRYCG	1 cut(s)	999
BsiHKAI	GWGCWC	2 cut(s)	545, 713
BsiSI	CCGG	6 cut(s)	660, 683, 695, 747, 818, 826
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	323, 324
BsmAI	GTCTC	3 cut(s)	425, 819, 825
BsmBI	CGTCTC	2 cut(s)	819, 825
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	791
Bso31I	GGTCTC	1 cut(s)	425
Bsp119I	TTCGAA	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	545, 713
Bsp143I	GATC	5 cut(s)	582, 890, 926, 996, 1013
BspACI	CCGC	3 cut(s)	565, 797, 800
BspANI	GGCC	1 cut(s)	791
BspCNI	CTCAG	2 cut(s)	298, 385
BspQI	GCTCTTC	2 cut(s)	773, 1032
BspT104I	TTCGAA	1 cut(s)	572
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	3 cut(s)	48, 294, 880
BsrFI	RCCGGY	2 cut(s)	682, 694
BsrI	ACTGG	2 cut(s)	60, 933
BssAI	RCCGGY	2 cut(s)	682, 694
BssECI	CCNNGG	2 cut(s)	716, 792
BssMI	GATC	5 cut(s)	582, 890, 926, 996, 1013
BssNI	GRCGYC	2 cut(s)	686, 812
Bst4CI	ACNGT	2 cut(s)	506, 641
Bst6I	CTCTTC	3 cut(s)	93, 773, 1032
BstACI	GRCGYC	2 cut(s)	686, 812
BstAFI	CTTAAG	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	5 cut(s)	684, 696, 713, 1044, 1048
BstDEI	CTNAG	4 cut(s)	285, 363, 393, 486
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	1 cut(s)	947
BstH2I	RGCGCY	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	5 cut(s)	585, 893, 929, 999, 1016
BstMAI	GTCTC	3 cut(s)	425, 819, 825
BstMBI	GATC	5 cut(s)	582, 890, 926, 996, 1013
BstMCI	CGRYCG	1 cut(s)	999
BstMWI	GCNNNNNNNGC	6 cut(s)	368, 448, 607, 683, 797, 803
BstNSI	RCATGY	1 cut(s)	1050
BstSCI	CCNGG	1 cut(s)	746
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	1013
BstXI	CCANNNNNNTGG	2 cut(s)	67, 424
BstYI	RGATCY	1 cut(s)	1013
BsuI	GTATCC	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	791
BtgI	CCRYGG	1 cut(s)	792
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	1 cut(s)	947
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	1 cut(s)	705
Cac8I	GCNNGC	5 cut(s)	684, 696, 713, 1044, 1048
CfoI	GCGC	1 cut(s)	872
Cfr10I	RCCGGY	2 cut(s)	682, 694
CseI	GACGC	2 cut(s)	675, 801
Csp6I	GTAC	6 cut(s)	13, 141, 381, 592, 616, 637
CviAII	CATG	3 cut(s)	164, 1007, 1047
CviQI	GTAC	6 cut(s)	13, 141, 381, 592, 616, 637
DdeI	CTNAG	4 cut(s)	285, 363, 393, 486
DpnI	GATC	5 cut(s)	584, 892, 928, 998, 1015
DpnII	GATC	5 cut(s)	582, 890, 926, 996, 1013
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	3 cut(s)	93, 773, 1032
EarI	CTCTTC	3 cut(s)	93, 773, 1032
Ecl136II	GAGCTC	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	543
Eco57I	CTGAAG	2 cut(s)	342, 617
EcoICRI	GAGCTC	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	545
Esp3I	CGTCTC	2 cut(s)	819, 825
FaeI	CATG	3 cut(s)	167, 1010, 1050
FaiI	YATR	8 cut(s)	165, 530, 707, 961, 980, 1008, 1031, 1048
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	3 cut(s)	163, 1006, 1046
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	1 cut(s)	798
FokI	GGATG	1 cut(s)	934
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	798
FspBI	CTAG	3 cut(s)	903, 942, 966
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	1 cut(s)	798
HaeII	RGCGCY	1 cut(s)	873
HaeIII	GGCC	1 cut(s)	791
HapII	CCGG	6 cut(s)	660, 683, 695, 747, 818, 826
HgaI	GACGC	2 cut(s)	675, 801
HhaI	GCGC	1 cut(s)	872
Hin1I	GRCGYC	2 cut(s)	686, 812
Hin1II	CATG	3 cut(s)	167, 1010, 1050
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HindIII	AAGCTT	2 cut(s)	179, 471
HinfI	GANTC	9 cut(s)	7, 116, 236, 413, 751, 836, 908, 971, 1001
HpaII	CCGG	6 cut(s)	660, 683, 695, 747, 818, 826
HphI	GGTGA	3 cut(s)	653, 661, 832
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	4 cut(s)	235, 394, 547, 1055
Hpy188III	TCNNGA	3 cut(s)	28, 903, 924
Hpy8I	GTNNAC	1 cut(s)	823
Hpy99I	CGWCG	2 cut(s)	691, 694
HpyAV	CCTTC	5 cut(s)	51, 234, 240, 492, 715
HpyCH4III	ACNGT	2 cut(s)	506, 641
HpyCH4V	TGCA	4 cut(s)	53, 532, 885, 1046
HpyF10VI	GCNNNNNNNGC	6 cut(s)	368, 448, 607, 683, 797, 803
HpyF3I	CTNAG	4 cut(s)	285, 363, 393, 486
Hsp92I	GRCGYC	2 cut(s)	686, 812
Hsp92II	CATG	3 cut(s)	167, 1010, 1050
HspAI	GCGC	1 cut(s)	870
KroI	GCCGGC	2 cut(s)	682, 694
KroNI	GCCGGC	2 cut(s)	684, 696
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	5 cut(s)	582, 890, 926, 996, 1013
LguI	GCTCTTC	2 cut(s)	773, 1032
LmnI	GCTCC	2 cut(s)	319, 1031
LweI	GCATC	2 cut(s)	686, 778
MaeI	CTAG	3 cut(s)	903, 942, 966
MaeIII	GTNAC	2 cut(s)	641, 843
MalI	GATC	5 cut(s)	584, 892, 928, 998, 1015
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	5 cut(s)	582, 890, 926, 996, 1013
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	1013
MhlI	GDGCHC	2 cut(s)	545, 713
MluCI	AATT	3 cut(s)	264, 516, 898
MlyI	GAGTC	3 cut(s)	110, 422, 830
MmeI	TCCRAC	1 cut(s)	917
MreI	CGCCGGCG	1 cut(s)	682
MroNI	GCCGGC	2 cut(s)	682, 694
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	6 cut(s)	660, 683, 695, 747, 818, 826
MspR9I	CCNGG	1 cut(s)	748
MunI	CAATTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	6 cut(s)	368, 448, 607, 683, 797, 803
NaeI	GCCGGC	2 cut(s)	684, 696
NciI	CCSGG	1 cut(s)	748
NdeII	GATC	5 cut(s)	582, 890, 926, 996, 1013
NgoMIV	GCCGGC	2 cut(s)	682, 694
NlaIII	CATG	3 cut(s)	167, 1010, 1050
NmeAIII	GCCGAG	1 cut(s)	741
NmuCI	GTSAC	1 cut(s)	641
NspI	RCATGY	1 cut(s)	1050
NspV	TTCGAA	1 cut(s)	572
PaeI	GCATGC	1 cut(s)	1050
PciSI	GCTCTTC	2 cut(s)	773, 1032
PcsI	WCGNNNNNNNCGW	1 cut(s)	686
PdiI	GCCGGC	2 cut(s)	684, 696
PfeI	GAWTC	5 cut(s)	236, 751, 908, 971, 1001
PkrI	GCNGC	1 cut(s)	799
Ple19I	CGATCG	1 cut(s)	999
PleI	GAGTC	3 cut(s)	110, 421, 830
PpsI	GAGTC	3 cut(s)	110, 421, 830
Psp124BI	GAGCTC	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	1013
PvuI	CGATCG	1 cut(s)	999
RsaI	GTAC	6 cut(s)	14, 142, 382, 593, 617, 638
RsaNI	GTAC	6 cut(s)	13, 141, 381, 592, 616, 637
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	545
SapI	GCTCTTC	2 cut(s)	773, 1032
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	798
Sau3AI	GATC	5 cut(s)	582, 890, 926, 996, 1013
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	3 cut(s)	110, 422, 830
ScrFI	CCNGG	1 cut(s)	748
SduI	GDGCHC	2 cut(s)	545, 713
SfaNI	GCATC	2 cut(s)	686, 778
SfuI	TTCGAA	1 cut(s)	572
SgrAI	CRCCGGYG	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	941
SphI	GCATGC	1 cut(s)	1050
Sse9I	AATT	3 cut(s)	264, 516, 898
SsiI	CCGC	3 cut(s)	565, 797, 800
SspMI	CTAG	3 cut(s)	903, 942, 966
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	746
TaaI	ACNGT	2 cut(s)	506, 641
TaqI	TCGA	5 cut(s)	126, 332, 572, 754, 999
TasI	AATT	3 cut(s)	264, 516, 898
TatI	WGTACW	4 cut(s)	12, 140, 380, 615
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	5 cut(s)	236, 751, 908, 971, 1001
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	705
TseFI	GTSAC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	4 cut(s)	180, 483, 869, 936
TspRI	CASTG	1 cut(s)	705
Vha464I	CTTAAG	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	902
XceI	RCATGY	1 cut(s)	1050
XcmI	CCANNNNNNNNNTGG	2 cut(s)	424, 799
XspI	CTAG	3 cut(s)	903, 942, 966
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.