Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009504

Physical Location & Seq

Genomic Coordinates Reverse (-)

67070616 .. 67072101

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG405000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGACCCAGAAGCAGAAAAAGCCAGAAGCCAAAGGCAATGAAGCTTCAAGCCCTTCTAAGCTGACCAGGGACAACAGTTCGAGAAAAACTGGAAGGATATTGCAGAGCCAGAGCTCCGATGATTCGAAAACAGAGCGGTTTTCAAAGGATGTGATAAACAAGTACCTGAAGCTAATCAAGCCTCTGTACTTGAAAGTTTCCAAGAGGTACAGTGACAAGGTGAAGGTTTCCGGCGACTTGCCGATGGCATCGCCGACGTCGTCGCCGGCGGTGTCTATGTACTCCCCTAGGAAGGAGAGGCAGGGGAATATTCCTGCCGGGATTCGAGTTGTTTGTAAGCATCTTGGGAAGAGCAAGTCGGCCACGGCGGCGATGGCGGTGGCGCCGCCGGTGAACCGGAGAGACGACTCGCTGGTGCTTCAAGCAGATGGGATTCAGAGCGCCATTCTGCATTGCAAGAGATCATTCAATTCTAGAGATTCTTCTTGCCTATCAAGATCAACAAGTTGGACTAGTTCGTCCATGAACTCATATTCTAGTGATTCTTCTATGCTATCACGGTTTGCGATCGAATCCCATGAGAGATCTGCGAGAAGCTCCATAGAGGAAGAGCTAGCATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.03

Weight (kDa)

9.85

Isoelectric Point (pI)

79.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52870 AT5G52870
fragaria_vesca	FvH4_7g30580 FvH4_7g30580 FvH4_7g30580
malus_domestica	MD01G1211000.v1.1 MD07G1281700.v1.1 MD07G1281800.v1.1
prunus_persica	Prupe.2G303400_v2.0.a1
pyrus_communis	pycom01g22150 pycom07g25570
rosa_chinensis	RchiOBHm_Chr1g0379481
rosa_laevigata	RLG00000026399
rosa_multiflora	Rmu_sc0006761.1_g000016
rosa_roxburghii	Rroxscaffold_4G00280170
rosa_rugosa	Rorug01G0412000 Rorug01G0412100
rosa_samantha	Rh1AG434600 Rh1BG392400 Rh1CG405000 Rh1DG423200
rosa_wichuraiana	Rw1G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	520
AatII	GACGTC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	385
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	5 cut(s)	139, 272, 371, 380, 389
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	2 cut(s)	260, 386
AfaI	GTAC	4 cut(s)	167, 191, 212, 284
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	5 cut(s)	51, 147, 196, 425, 472
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	6 cut(s)	47, 64, 117, 175, 600, 616
AluI	AGCT	6 cut(s)	47, 64, 117, 175, 600, 616
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	399
AoxI	GGCC	1 cut(s)	363
AspA2I	CCTAGG	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	388, 446
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	235, 406
AsuII	TTCGAA	1 cut(s)	128
AsuNHI	GCTAGC	1 cut(s)	616
AvrII	CCTAGG	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	3 cut(s)	241, 370, 425
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	399
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	5 cut(s)	291, 477, 516, 540, 617
BfoI	RGCGCY	2 cut(s)	389, 447
BglI	GCCNNNNNGGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	2 cut(s)	372, 389
BlnI	CCTAGG	1 cut(s)	290
BlsI	GCNGC	2 cut(s)	373, 390
Bme1390I	CCNGG	2 cut(s)	70, 322
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	70, 322
BmsI	GCATC	2 cut(s)	260, 352
BmtI	GCTAGC	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	322
BsaHI	GRCGYC	2 cut(s)	260, 386
BsaJI	CCNNGG	3 cut(s)	69, 290, 366
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse118I	RCCGGY	2 cut(s)	268, 391
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	2 cut(s)	46, 454
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	69, 290, 366
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	2 cut(s)	46, 454
BseNI	ACTGG	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	5 cut(s)	234, 269, 321, 392, 400
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	464, 500, 570, 587
BspACI	CCGC	5 cut(s)	139, 272, 371, 380, 389
BspANI	GGCC	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	387
BspOI	GCTAGC	1 cut(s)	620
BspQI	GCTCTTC	2 cut(s)	347, 606
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	385
BsrBI	CCGCTC	1 cut(s)	139
BsrDI	GCAATG	2 cut(s)	46, 454
BsrFI	RCCGGY	2 cut(s)	268, 391
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	2 cut(s)	268, 391
BssECI	CCNNGG	3 cut(s)	69, 290, 366
BssMI	GATC	4 cut(s)	464, 500, 570, 587
BssNI	GRCGYC	2 cut(s)	260, 386
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	80, 215, 564
Bst6I	CTCTTC	2 cut(s)	347, 606
BstACI	GRCGYC	2 cut(s)	260, 386
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	270, 618, 622
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	2 cut(s)	389, 447
BstHHI	GCGC	2 cut(s)	388, 446
BstKTI	GATC	4 cut(s)	467, 503, 573, 590
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	4 cut(s)	464, 500, 570, 587
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 181, 371, 377
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	68, 320
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	366
BtgZI	GCGATG	2 cut(s)	237, 389
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	270, 618, 622
CfoI	GCGC	2 cut(s)	388, 446
Cfr10I	RCCGGY	2 cut(s)	268, 391
Csp6I	GTAC	4 cut(s)	166, 190, 211, 283
CviAII	CATG	3 cut(s)	526, 581, 621
CviQI	GTAC	4 cut(s)	166, 190, 211, 283
DdeI	CTNAG	1 cut(s)	60
DinI	GGCGCC	1 cut(s)	387
DpnI	GATC	4 cut(s)	466, 502, 572, 589
DpnII	GATC	4 cut(s)	464, 500, 570, 587
DrdI	GACNNNNNNGTC	1 cut(s)	520
DseDI	GACNNNNNNGTC	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	347, 606
EarI	CTCTTC	2 cut(s)	347, 606
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	387
EheI	GGCGCC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	3 cut(s)	529, 584, 624
FaiI	YATR	7 cut(s)	281, 527, 535, 554, 582, 605, 622
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	525, 580, 620
Fnu4HI	GCNGC	2 cut(s)	372, 389
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	372, 389
FspBI	CTAG	5 cut(s)	291, 477, 516, 540, 617
GlaI	GCGC	2 cut(s)	387, 445
GluI	GCNGC	2 cut(s)	372, 389
HaeII	RGCGCY	2 cut(s)	389, 447
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	5 cut(s)	234, 269, 321, 392, 400
HhaI	GCGC	2 cut(s)	388, 446
Hin1I	GRCGYC	2 cut(s)	260, 386
Hin1II	CATG	3 cut(s)	529, 584, 624
Hin6I	GCGC	2 cut(s)	386, 444
HinP1I	GCGC	2 cut(s)	386, 444
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	7 cut(s)	125, 325, 410, 436, 482, 545, 575
HpaII	CCGG	5 cut(s)	234, 269, 321, 392, 400
HphI	GGTGA	2 cut(s)	235, 406
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	121, 441, 629
Hpy188III	TCNNGA	3 cut(s)	84, 477, 498
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	3 cut(s)	262, 265, 268
HpyAV	CCTTC	4 cut(s)	66, 90, 220, 289
HpyCH4III	ACNGT	3 cut(s)	80, 215, 564
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	106, 454, 459
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 181, 371, 377
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	2 cut(s)	260, 386
Hsp92II	CATG	3 cut(s)	529, 584, 624
HspAI	GCGC	2 cut(s)	386, 444
KasI	GGCGCC	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	464, 500, 570, 587
LguI	GCTCTTC	2 cut(s)	347, 606
LmnI	GCTCC	2 cut(s)	122, 605
LweI	GCATC	2 cut(s)	260, 352
MaeI	CTAG	5 cut(s)	291, 477, 516, 540, 617
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	4 cut(s)	466, 502, 572, 589
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	464, 500, 570, 587
MboII	GAAGA	4 cut(s)	364, 477, 540, 623
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	472
Mly113I	GGCGCC	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	4 cut(s)	195, 201, 294, 601
MreI	CGCCGGCG	1 cut(s)	268
MroNI	GCCGGC	1 cut(s)	268
MspI	CCGG	5 cut(s)	234, 269, 321, 392, 400
MspR9I	CCNGG	2 cut(s)	70, 322
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	22, 181, 371, 377
NaeI	GCCGGC	1 cut(s)	270
NarI	GGCGCC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	4 cut(s)	464, 500, 570, 587
NgoMIV	GCCGGC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	616
NlaIII	CATG	3 cut(s)	529, 584, 624
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	624
NspV	TTCGAA	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	624
PciSI	GCTCTTC	2 cut(s)	347, 606
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	6 cut(s)	125, 325, 436, 482, 545, 575
PflFI	GACNNNGTC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	373, 390
Ple19I	CGATCG	1 cut(s)	573
PleI	GAGTC	1 cut(s)	404
PluTI	GGCGCC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	587
PsyI	GACNNNGTC	1 cut(s)	262
PvuI	CGATCG	1 cut(s)	573
RsaI	GTAC	4 cut(s)	167, 191, 212, 284
RsaNI	GTAC	4 cut(s)	166, 190, 211, 283
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	2 cut(s)	347, 606
SatI	GCNGC	2 cut(s)	372, 389
Sau3AI	GATC	4 cut(s)	464, 500, 570, 587
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	70, 322
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	260, 352
SfoI	GGCGCC	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	128
SgrAI	CRCCGGYG	2 cut(s)	268, 391
SpeI	ACTAGT	1 cut(s)	515
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	5 cut(s)	139, 272, 371, 380, 389
SspDI	GGCGCC	1 cut(s)	385
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	5 cut(s)	291, 477, 516, 540, 617
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	68, 320
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	3 cut(s)	80, 215, 564
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	4 cut(s)	83, 128, 328, 573
TasI	AATT	1 cut(s)	472
TatI	WGTACW	2 cut(s)	189, 282
TauI	GCSGC	2 cut(s)	374, 391
TfiI	GAWTC	6 cut(s)	125, 325, 436, 482, 545, 575
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	57, 542
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	262
XbaI	TCTAGA	1 cut(s)	476
XceI	RCATGY	1 cut(s)	624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	5 cut(s)	291, 477, 516, 540, 617
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.