AT5G53900
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006807
Physical Location & Seq
Reverse (-)
21881142 .. 21883433
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53900.1

Sequence Viewer

Length: 798 bp
ATGGGTAAAGTTGCTTCTGATAAATGTCACAAGTGGGTTTTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGCAAAGTTCTTTTGATGCTCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGACAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGCAAGATTATTCCAGAAGATCTTCATTTTGTGCTAAGGATGAGGCAAATGTTTGAATCAATTGGTTACAGATCAGGTTTTTACCTCTCACAGCTCTTCTCTTCAAACCGAACCGCGACTCCATCTTCTTCCACGGTTCCAAACCAGATACCTCAGTCTCAAGGTTTTAACTGGGGATCACACTCACCTTTGTTACCTTCCCCTAGCTTTCAGAACCAACTACCTGCTTCAGCTAGATTCGGTTTCCTTCAAGATAACAATGTTCCTCCTCAGATGCTTCCTCCAATGGAAGAGCATGAAGACGACATCAAATGGCCTAATGGTTTGTCGTTGTTCAATGCGTTGACTGGACGTGCAGATGAAGCTAGTAGGCTTTTGTTTAACCAGGAGCAGAACCCGATGAATGTCGAAAACCAGAACGAGTTCTTGAACCTTGAAGGTCATCATCCTAACAAGTTTAGAAGAAGCTATACATTGCCAGCTCGAATGGATTCTTCGTCATCATCAACCTCGCTTGATCAGCAACAACCACTGGAGTTTAGGAACAATAACTCTGGAAGCAACTCGGGTTTGTTCCCTGACGTTATGGAGACGTTTTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

265

Amino Acids

29.93

Weight (kDa)

5.24

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 1 - 82 1.7e-12 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccII CGCG 1 cut(s) 308
AciI CCGC 1 cut(s) 306
AclWI GGATC 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 405
AgsI TTSAA 8 cut(s) 43, 161, 248, 297, 443, 529, 622, 629
AjiI CACGTC 1 cut(s) 545
AjnI CCWGG 1 cut(s) 576
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 8 cut(s) 164, 184, 286, 399, 425, 557, 660, 674
AluI AGCT 8 cut(s) 164, 184, 286, 399, 425, 557, 660, 674
Alw26I GTCTC 2 cut(s) 354, 776
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 757
AoxI GGCC 1 cut(s) 506
Asp700I GAANNNNTTC 3 cut(s) 213, 614, 682
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 369
AsuII TTCGAA 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 757
AvaII GGWCC 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 332, 365
BarI GAAGNNNNNNTAC 3 cut(s) 30, 646, 678
BbsI GAAGAC 1 cut(s) 498
BccI CCATC 2 cut(s) 58, 322
BciT130I CCWGG 1 cut(s) 578
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 2 cut(s) 354, 776
BfaI CTAG 4 cut(s) 185, 396, 426, 558
BfuAI ACCTGC 1 cut(s) 424
BglII AGATCT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 757
BmgBI CACGTC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 578
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 88, 456
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 2 cut(s) 93, 746
Bpu10I CCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bse1I ACTGG 4 cut(s) 86, 368, 544, 729
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 237, 637
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 2 cut(s) 359, 476
BseNI ACTGG 4 cut(s) 86, 368, 544, 729
BseRI GAGGAG 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 757
BsmAI GTCTC 2 cut(s) 354, 776
BsmBI CGTCTC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 757
Bsp119I TTCGAA 1 cut(s) 129
Bsp143I GATC 4 cut(s) 211, 263, 368, 709
BspACI CCGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 2 cut(s) 358, 475
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 3 cut(s) 108, 293, 477
BspT104I TTCGAA 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 4 cut(s) 86, 368, 544, 729
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 4 cut(s) 211, 263, 368, 709
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 4 cut(s) 108, 293, 298, 477
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 3 cut(s) 227, 345, 462
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 237, 637
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 4 cut(s) 214, 266, 371, 712
BstMAI GTCTC 2 cut(s) 354, 776
BstMBI GATC 4 cut(s) 211, 263, 368, 709
BstMWI GCNNNNNNNGC 2 cut(s) 554, 712
BstNI CCWGG 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 576
BstUI CGCG 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 545
BtsCI GGATG 2 cut(s) 237, 637
BtsIMutI CAGTG 1 cut(s) 722
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 672
Cfr13I GGNCC 1 cut(s) 117
CviAII CATG 2 cut(s) 170, 488
DdeI CTNAG 3 cut(s) 227, 345, 462
DpnI GATC 4 cut(s) 213, 265, 370, 711
DpnII GATC 4 cut(s) 211, 263, 368, 709
Eam1104I CTCTTC 4 cut(s) 108, 293, 298, 477
EarI CTCTTC 4 cut(s) 108, 293, 298, 477
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 776
FaeI CATG 2 cut(s) 173, 491
FaiI YATR 4 cut(s) 171, 489, 663, 779
FatI CATG 2 cut(s) 169, 487
FbaI TGATCA 1 cut(s) 709
FokI GGATG 2 cut(s) 244, 624
FspBI CTAG 4 cut(s) 185, 396, 426, 558
GsuI CTGGAG 2 cut(s) 93, 746
HaeIII GGCC 1 cut(s) 508
Hin1II CATG 2 cut(s) 173, 491
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HinfI GANTC 7 cut(s) 56, 131, 157, 248, 310, 429, 683
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 6 cut(s) 19, 55, 61, 144, 405, 465
Hpy188III TCNNGA 5 cut(s) 110, 206, 443, 619, 747
Hpy8I GTNNAC 1 cut(s) 537
HpyAV CCTTC 3 cut(s) 399, 449, 623
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 3 cut(s) 544, 774, 785
HpyCH4V TGCA 2 cut(s) 195, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 712
HpyF3I CTNAG 3 cut(s) 227, 345, 462
HpySE526I ACGT 3 cut(s) 544, 774, 785
Hsp92II CATG 2 cut(s) 173, 491
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 4 cut(s) 211, 263, 368, 709
LguI GCTCTTC 3 cut(s) 108, 293, 477
LmnI GCTCC 1 cut(s) 580
LweI GCATC 2 cut(s) 88, 456
MaeI CTAG 4 cut(s) 185, 396, 426, 558
MaeII ACGT 3 cut(s) 544, 774, 785
MaeIII GTNAC 4 cut(s) 26, 177, 257, 384
MalI GATC 4 cut(s) 213, 265, 370, 711
MboI GATC 4 cut(s) 211, 263, 368, 709
MfeI CAATTG 2 cut(s) 147, 252
MflI RGATCY 1 cut(s) 211
MluCI AATT 4 cut(s) 76, 125, 147, 252
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 9 cut(s) 117, 228, 287, 354, 468, 471, 483, 712, 786
MroXI GAANNNNTTC 3 cut(s) 213, 614, 682
MseI TTAA 2 cut(s) 360, 573
MspR9I CCNGG 1 cut(s) 578
MunI CAATTG 2 cut(s) 147, 252
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 578
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 554, 712
NdeII GATC 4 cut(s) 211, 263, 368, 709
NlaIII CATG 2 cut(s) 173, 491
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 26
NspV TTCGAA 1 cut(s) 129
PciSI GCTCTTC 3 cut(s) 108, 293, 477
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 3 cut(s) 213, 614, 682
PfeI GAWTC 6 cut(s) 56, 131, 157, 248, 429, 683
PflFI GACNNNGTC 1 cut(s) 171
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 171
SapI GCTCTTC 3 cut(s) 108, 293, 477
SaqAI TTAA 2 cut(s) 360, 573
Sau3AI GATC 4 cut(s) 211, 263, 368, 709
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 578
SfaNI GCATC 2 cut(s) 88, 456
SfuI TTCGAA 1 cut(s) 129
SinI GGWCC 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 4 cut(s) 76, 125, 147, 252
SsiI CCGC 1 cut(s) 306
SspMI CTAG 4 cut(s) 185, 396, 426, 558
StyD4I CCNGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 3 cut(s) 547, 777, 788
TaqI TCGA 3 cut(s) 129, 600, 676
TaqII GACCGA 1 cut(s) 134
TasI AATT 4 cut(s) 76, 125, 147, 252
TfiI GAWTC 6 cut(s) 56, 131, 157, 248, 429, 683
Tru1I TTAA 2 cut(s) 360, 573
Tru9I TTAA 2 cut(s) 360, 573
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 206, 504, 567, 608
TspRI CASTG 1 cut(s) 729
Tth111I GACNNNGTC 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 117
XmnI GAANNNNTTC 3 cut(s) 213, 614, 682
XspI CTAG 4 cut(s) 185, 396, 426, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.