Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006807

Physical Location & Seq

Genomic Coordinates Reverse (-)

25362353 .. 25364491

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g22370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGTGGGCTCAGGAGCAACAGATAGGAGCAAAGAGGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAACCGTCTGTCTCAACACTGACTGGACTTACTCTGTCTTCTGGACTATCCGTCCCCGCCCGAGAGTTAGAGGTGGTAATGGCTGCAAGGTTGGGGATGACAATGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTCGAGCGAGAGTTTCATCAGATTGTCTGGAAGAAATTGATGGAGAAGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGCTGTATAATTATGGAGAAGGGTTGATGGGGAAGGTGGCATCTGATAAATGCCACAAATGGGTCTTCAAAGAACCCACAGAGTGTGAACCAAACATCTCCAACTACTGGCAAAGTTCATTTGATGCTCTTCCTCCTGAATGGACTGATCAATTTGAGTCAGGCATTCAGACAATTGCTGTAATTCAAGCTGGTCATGGGCTTCTGCAGTTGGGCTCCTGCAAGATTATTCCTGAAGACCTGCATTTTGTGCTAAGAATGAGGCATACATTTGAATCTCTAGGCTACCAATCTGGTTTCTACCTCTCCCAACTCTTTTCATCAAACCGAAACAACTCTGGATCATCGGTGCTGCCCTCAAAGCAGTCCCCAATGCCAATCCGCCCTTCTCCACCTCTCTTCAATTGGGCTCAAAGGCCTCTTCCATCTGCAGCAACCATGCAGCTTCCTTCACCCAATTTCCAAAACTCCGCTGCTAGACTTGGGTACAATCCTCAAGCTGGTAAAGACGAGACACACATGTTTTTGCTGCCTCATTCGGCTGAAACACAAATGGGAGGAGACATGATGGGAGGCGGAGGAGGAGGAGGAGGAGAGCATGAAAGTGACATCAAATGGCCTAATGGATTGTCCTTCTTCAATGCACTCACGGGGCGGTCTGATGATGCAAAGCTTTTGTTCAATCCGGAGAGCTTGGTAAACAAAGGCGGGGACGAAAATCACCACCACAACAACCCGAATGCAAATTCAGACCACAATGAGTTTTTGAGCTTGGACTGCCATCCGGAGAGTAGCGCAAGGAAGCACATGGAAAACAAATACAGGAGGAGCTTTACTTTGCCTGCAAGGATGGCTTCGTCATCTTCGAATTCGGTTGATCGACCATCAGCACCAACCTGTCGGGTATCGAAACGCGGAAGCTGGTATGTACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

409

Amino Acids

45.19

Weight (kDa)

6.4

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53900 AT5G53900 AT5G53900
fragaria_vesca	FvH4_3g19620 FvH4_3g19620 FvH4_3g19620
malus_domestica	MD03G1230900.v1.1 MD11G1252200.v1.1
prunus_persica	Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1
pyrus_communis	pycom03g17860 pycom11g22370
rosa_chinensis	RchiOBHm_Chr5g0032811
rosa_laevigata	RLG00000033430
rosa_multiflora	Rmu_sc0000986.1_g000046
rosa_roxburghii	Rroxscaffold_1G00047240
rosa_rugosa	Rorug05G0134000 Rorug05G0134100
rosa_samantha	Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500
rosa_wichuraiana	Rw5G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccII	CGCG	1 cut(s)	1206
AccIII	TCCGGA	2 cut(s)	976, 1075
AciI	CCGC	7 cut(s)	127, 673, 762, 867, 946, 999, 1206
AclWI	GGATC	2 cut(s)	251, 640
AcsI	RAATTY	2 cut(s)	1036, 1159
AcuI	CTGAAG	2 cut(s)	259, 546
AdeI	CACNNNGTG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	779, 1221
AfiI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 791
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	6 cut(s)	361, 479, 566, 694, 931, 973
AhdI	GACNNNNNGTC	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
Alw26I	GTCTC	3 cut(s)	86, 797, 846
AlwI	GGATC	2 cut(s)	251, 640
Ama87I	CYCGRG	1 cut(s)	130
Aor13HI	TCCGGA	2 cut(s)	976, 1075
AoxI	GGCC	5 cut(s)	51, 63, 270, 707, 908
ApeKI	GCWGC	7 cut(s)	153, 177, 643, 722, 733, 764, 820
ApoI	RAATTY	2 cut(s)	1036, 1159
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspLEI	GCGC	1 cut(s)	1088
AspS9I	GGNCC	2 cut(s)	52, 64
AsuHPI	GGTGA	2 cut(s)	735, 1004
AsuII	TTCGAA	1 cut(s)	1157
AvaI	CYCGRG	1 cut(s)	130
BanII	GRGCYC	3 cut(s)	11, 509, 703
BbsI	GAAGAC	3 cut(s)	100, 349, 534
BbvI	GCAGC	7 cut(s)	140, 189, 630, 734, 745, 751, 807
BccI	CCATC	9 cut(s)	43, 194, 242, 313, 724, 853, 1080, 1135, 1183
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	3 cut(s)	86, 797, 846
BfaI	CTAG	2 cut(s)	572, 768
BfmI	CTRYAG	2 cut(s)	497, 720
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	7 cut(s)	154, 178, 644, 723, 734, 765, 821
BlsI	GCNGC	7 cut(s)	155, 179, 645, 724, 735, 766, 822
BmeRI	GACNNNNNGTC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	52, 64
BmiI	GGNNCC	1 cut(s)	508
BmsI	GCATC	3 cut(s)	341, 406, 946
BpiI	GAAGAC	3 cut(s)	100, 349, 534
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	1157
BpuEI	CTTGAG	1 cut(s)	771
BsaWI	WCCGGW	2 cut(s)	976, 1075
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 791
Bse1I	ACTGG	2 cut(s)	98, 404
BseAI	TCCGGA	2 cut(s)	976, 1075
BseGI	GGATG	4 cut(s)	51, 172, 1072, 1146
BseLI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 791
BseMII	CTCAG	2 cut(s)	24, 82
BseNI	ACTGG	2 cut(s)	98, 404
BseRI	GAGGAG	7 cut(s)	864, 885, 888, 891, 894, 897, 1132
BseXI	GCAGC	7 cut(s)	140, 189, 630, 734, 745, 751, 807
Bsh1236I	CGCG	1 cut(s)	1206
BshFI	GGCC	5 cut(s)	53, 65, 272, 709, 910
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	977, 1076
BslFI	GGGAC	3 cut(s)	108, 643, 1016
BslI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 791
BsmAI	GTCTC	3 cut(s)	86, 797, 846
BsmFI	GGGAC	3 cut(s)	108, 643, 1016
BsmI	GAATGC	2 cut(s)	456, 1036
BsnI	GGCC	5 cut(s)	53, 65, 272, 709, 910
BsoBI	CYCGRG	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	1157
Bsp1286I	GDGCHC	3 cut(s)	11, 509, 703
Bsp13I	TCCGGA	2 cut(s)	976, 1075
Bsp143I	GATC	4 cut(s)	256, 439, 632, 1168
BspACI	CCGC	7 cut(s)	127, 673, 762, 867, 946, 999, 1206
BspANI	GGCC	5 cut(s)	53, 65, 272, 709, 910
BspCNI	CTCAG	2 cut(s)	23, 81
BspEI	TCCGGA	2 cut(s)	976, 1075
BspFNI	CGCG	1 cut(s)	1206
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	508
BspMAI	CTGCAG	2 cut(s)	501, 724
BspMI	ACCTGC	1 cut(s)	540
BspPI	GGATC	2 cut(s)	251, 640
BspQI	GCTCTTC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	1157
BsrI	ACTGG	2 cut(s)	98, 404
BssMI	GATC	4 cut(s)	256, 439, 632, 1168
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	3 cut(s)	426, 695, 717
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	1157
BstC8I	GCNNGC	1 cut(s)	1134
BstDEI	CTNAG	3 cut(s)	10, 68, 545
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	4 cut(s)	51, 172, 1072, 1146
BstFNI	CGCG	1 cut(s)	1206
BstHHI	GCGC	1 cut(s)	1088
BstKTI	GATC	4 cut(s)	259, 442, 635, 1171
BstMAI	GTCTC	3 cut(s)	86, 797, 846
BstMBI	GATC	4 cut(s)	256, 439, 632, 1168
BstMWI	GCNNNNNNNGC	4 cut(s)	541, 652, 1068, 1142
BstNSI	RCATGY	1 cut(s)	814
BstSFI	CTRYAG	2 cut(s)	497, 720
BstUI	CGCG	1 cut(s)	1206
BstV1I	GCAGC	7 cut(s)	140, 189, 630, 734, 745, 751, 807
BstV2I	GAAGAC	3 cut(s)	100, 349, 534
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	5 cut(s)	53, 65, 272, 709, 910
BtsCI	GGATG	4 cut(s)	51, 172, 1072, 1146
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	1134
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	1 cut(s)	1088
Cfr13I	GGNCC	2 cut(s)	52, 64
Csp6I	GTAC	2 cut(s)	778, 1220
CviAII	CATG	7 cut(s)	59, 488, 730, 811, 856, 890, 1099
CviQI	GTAC	2 cut(s)	778, 1220
DdeI	CTNAG	3 cut(s)	10, 68, 545
DpnI	GATC	4 cut(s)	258, 441, 634, 1170
DpnII	GATC	4 cut(s)	256, 439, 632, 1168
DraIII	CACNNNGTG	1 cut(s)	375
DriI	GACNNNNNGTC	1 cut(s)	120
Eam1104I	CTCTTC	3 cut(s)	426, 695, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	120
EarI	CTCTTC	3 cut(s)	426, 695, 717
EciI	GGCGGA	2 cut(s)	662, 882
Eco147I	AGGCCT	2 cut(s)	272, 709
Eco24I	GRGCYC	3 cut(s)	11, 509, 703
Eco57I	CTGAAG	2 cut(s)	259, 546
Eco88I	CYCGRG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	1159
EcoT38I	GRGCYC	3 cut(s)	11, 509, 703
FaeI	CATG	7 cut(s)	62, 491, 733, 814, 859, 893, 1102
FalI	AAGNNNNNCTT	2 cut(s)	1129, 1161
FaqI	GGGAC	3 cut(s)	108, 643, 1016
FatI	CATG	7 cut(s)	58, 487, 729, 810, 855, 889, 1098
FauI	CCCGC	2 cut(s)	134, 992
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	7 cut(s)	154, 178, 644, 723, 734, 765, 821
FokI	GGATG	4 cut(s)	58, 179, 1059, 1153
FriOI	GRGCYC	3 cut(s)	11, 509, 703
Fsp4HI	GCNGC	7 cut(s)	154, 178, 644, 723, 734, 765, 821
FspBI	CTAG	2 cut(s)	572, 768
GlaI	GCGC	1 cut(s)	1087
GluI	GCNGC	7 cut(s)	154, 178, 644, 723, 734, 765, 821
HaeIII	GGCC	5 cut(s)	53, 65, 272, 709, 910
HapII	CCGG	2 cut(s)	977, 1076
HhaI	GCGC	1 cut(s)	1088
Hin1II	CATG	7 cut(s)	62, 491, 733, 814, 859, 893, 1102
Hin6I	GCGC	1 cut(s)	1086
HinP1I	GCGC	1 cut(s)	1086
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	2 cut(s)	449, 566
HpaII	CCGG	2 cut(s)	977, 1076
HphI	GGTGA	2 cut(s)	735, 1004
Hpy166II	GTNNAC	2 cut(s)	380, 991
Hpy188I	TCNGA	8 cut(s)	71, 229, 266, 337, 462, 952, 1042, 1226
Hpy188III	TCNNGA	9 cut(s)	12, 59, 112, 236, 428, 524, 630, 977, 1076
Hpy8I	GTNNAC	2 cut(s)	380, 991
HpyAV	CCTTC	7 cut(s)	65, 283, 305, 319, 687, 750, 934
HpyCH4III	ACNGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	4 cut(s)	541, 652, 1068, 1142
HpyF3I	CTNAG	3 cut(s)	10, 68, 545
Hsp92II	CATG	7 cut(s)	62, 491, 733, 814, 859, 893, 1102
HspAI	GCGC	1 cut(s)	1086
Kpn2I	TCCGGA	2 cut(s)	976, 1075
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	256, 439, 632, 1168
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	4 cut(s)	14, 27, 512, 1119
Lsp1109I	GCAGC	7 cut(s)	140, 189, 630, 734, 745, 751, 807
LweI	GCATC	3 cut(s)	341, 406, 946
MaeI	CTAG	2 cut(s)	572, 768
MaeIII	GTNAC	1 cut(s)	896
MalI	GATC	4 cut(s)	258, 441, 634, 1170
MboI	GATC	4 cut(s)	256, 439, 632, 1168
MfeI	CAATTG	2 cut(s)	465, 694
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	11, 509, 703
MluCI	AATT	9 cut(s)	243, 301, 443, 465, 474, 694, 748, 1036, 1159
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	417
MroI	TCCGGA	2 cut(s)	976, 1075
MslI	CAYNNNNRTG	1 cut(s)	894
MspA1I	CMGCKG	2 cut(s)	295, 764
MspI	CCGG	2 cut(s)	977, 1076
MunI	CAATTG	2 cut(s)	465, 694
Mva1269I	GAATGC	2 cut(s)	456, 1036
MvnI	CGCG	1 cut(s)	1206
MwoI	GCNNNNNNNGC	4 cut(s)	541, 652, 1068, 1142
NdeII	GATC	4 cut(s)	256, 439, 632, 1168
NlaIII	CATG	7 cut(s)	62, 491, 733, 814, 859, 893, 1102
NlaIV	GGNNCC	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	896
NspI	RCATGY	1 cut(s)	814
NspV	TTCGAA	1 cut(s)	1157
PagI	TCATGA	1 cut(s)	58
PceI	AGGCCT	2 cut(s)	272, 709
PciI	ACATGT	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	1154
PctI	GAATGC	2 cut(s)	456, 1036
PfeI	GAWTC	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	399
PkrI	GCNGC	7 cut(s)	155, 179, 645, 724, 735, 766, 822
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PscI	ACATGT	1 cut(s)	810
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	2 cut(s)	52, 64
PstI	CTGCAG	2 cut(s)	501, 724
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	2 cut(s)	779, 1221
RsaNI	GTAC	2 cut(s)	778, 1220
RseI	CAYNNNNRTG	1 cut(s)	894
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	7 cut(s)	154, 178, 644, 723, 734, 765, 821
Sau3AI	GATC	4 cut(s)	256, 439, 632, 1168
Sau96I	GGNCC	2 cut(s)	52, 64
SchI	GAGTC	1 cut(s)	458
SduI	GDGCHC	3 cut(s)	11, 509, 703
SfaNI	GCATC	3 cut(s)	341, 406, 946
SfcI	CTRYAG	2 cut(s)	497, 720
SfuI	TTCGAA	1 cut(s)	1157
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	1 cut(s)	786
SmoI	CTYRAG	1 cut(s)	786
Sse9I	AATT	9 cut(s)	243, 301, 443, 465, 474, 694, 748, 1036, 1159
SseBI	AGGCCT	2 cut(s)	272, 709
SsiI	CCGC	7 cut(s)	127, 673, 762, 867, 946, 999, 1206
SspMI	CTAG	2 cut(s)	572, 768
StuI	AGGCCT	2 cut(s)	272, 709
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	4 cut(s)	211, 1157, 1171, 1199
TasI	AATT	9 cut(s)	243, 301, 443, 465, 474, 694, 748, 1036, 1159
TatI	WGTACW	1 cut(s)	1219
TfiI	GAWTC	1 cut(s)	566
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	7 cut(s)	153, 177, 643, 722, 733, 764, 820
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	5 cut(s)	47, 213, 399, 600, 906
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	2 cut(s)	1036, 1159
XceI	RCATGY	1 cut(s)	814
XspI	CTAG	2 cut(s)	572, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.