Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006807

Physical Location & Seq

Genomic Coordinates Forward (+)

12697541 .. 12700537

Gene Structure 2997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19620.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGAAGATCCTGTCAGAAAAGCCTTTAGCAAAATGTCCATTCAACTCTATAATTATGGAGAAGGGTGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTCTTCAAAGAACCAACAGAGTGTGAACCAAATATCTCCAACTACTGGCAAAGTTCATTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTTGAGTCAGGAATTCAGACAATTGCTGTTATTCAAGCTGGCCATGGACTTCTGCAACTAGGTTCCTGCAAAATTATACCAGAAGACCTTCATTTTGTGCTAAGAATGAGACACACCTTTGAATCACTAGGCTACCAATCTGGTTTCTACCTCTCTCAGCTTTTTGCTTCAAACAGAAACAATTCAAATTCTTCTGTTCCAGTACTTCCTTCGAAGCAATCCCCCATTCCGATTCGACCTCCTCCTCCGTTGTTCAATTGGGCTCAAAGGCCACTCCCGCCTGCAACATCTATGCAGCTGCCTTCACCCAATTTTCAAAACTCTGCTGCCGCCAGACTTGGATATCCTCACCAATCCAACAAAGATGAAAGCACCCATATGTTTTTGCTGCCTCATTCGGCCGAAACCCAAATGGGAGATCACCACATGATGGGAGGAGGAGAACAGCATGAAAATGACATCAAGTGGCCAAATGGACTGTCTTTCTTTAGTGCTCTGACTGGACGTAGTGATGATGCAAAGCTTTTGTTTAACCCGGAGAACTTAGGAAACAAAGCAGCAGAGGAAGATCCAAATTTGGACGGTTCCAACAATCCGAACCACGAGTTCTTGAGCTTGGATTGCCATCCGGATGGTAGTAATGCAAGGAAGATGAACATGGAAAACAAGTACAAGAGGAGCTTTACTTTGCCTGCAAGAATGACTTCATCATCTTCAACTTCAGTTGATCATCACCAGCACCAGAACAGTTACAACCGGAATTCTGAAGGTGGTATGTACTCTGATGTCATGGAGACCTTCTTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

337

Amino Acids

37.63

Weight (kDa)

5.91

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	21 - 74	1.1e-08	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N	PF14215	89 - 189	7.4e-17	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53900 AT5G53900 AT5G53900
fragaria_vesca	FvH4_3g19620 FvH4_3g19620 FvH4_3g19620
malus_domestica	MD03G1230900.v1.1 MD11G1252200.v1.1
prunus_persica	Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1
pyrus_communis	pycom03g17860 pycom11g22370
rosa_chinensis	RchiOBHm_Chr5g0032811
rosa_laevigata	RLG00000033430
rosa_multiflora	Rmu_sc0000986.1_g000046
rosa_roxburghii	Rroxscaffold_1G00047240
rosa_rugosa	Rorug05G0134000 Rorug05G0134100
rosa_samantha	Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500
rosa_wichuraiana	Rw5G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	156, 631
AccIII	TCCGGA	1 cut(s)	829
AciI	CCGC	2 cut(s)	479, 531
AclWI	GGATC	2 cut(s)	4, 764
AcoI	YGGCCR	3 cut(s)	241, 600, 668
AcsI	RAATTY	4 cut(s)	213, 388, 775, 961
AcuI	CTGAAG	2 cut(s)	906, 987
AfaI	GTAC	3 cut(s)	405, 872, 980
AfiI	CCNNNNNNNGG	3 cut(s)	109, 156, 631
AgsI	TTSAA	9 cut(s)	46, 118, 236, 323, 372, 387, 457, 518, 918
AluBI	AGCT	6 cut(s)	239, 361, 499, 724, 816, 882
AluI	AGCT	6 cut(s)	239, 361, 499, 724, 816, 882
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	304, 989
AlwI	GGATC	2 cut(s)	4, 764
Aor13HI	TCCGGA	1 cut(s)	829
AoxI	GGCC	4 cut(s)	241, 470, 600, 668
ApeKI	GCWGC	5 cut(s)	496, 499, 527, 589, 758
ApoI	RAATTY	4 cut(s)	213, 388, 775, 961
ArsI	GACNNNNNNTTYG	4 cut(s)	278, 310, 665, 697
Asp700I	GAANNNNTTC	3 cut(s)	288, 382, 904
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	4 cut(s)	498, 542, 614, 926
AsuII	TTCGAA	1 cut(s)	413
BalI	TGGCCA	2 cut(s)	243, 670
BanII	GRGCYC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	2 cut(s)	106, 291
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	5 cut(s)	486, 508, 514, 576, 770
BccI	CCATC	4 cut(s)	70, 625, 827, 834
BclI	TGATCA	2 cut(s)	196, 928
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	2 cut(s)	304, 989
BfaI	CTAG	2 cut(s)	260, 329
BisI	GCNGC	6 cut(s)	497, 500, 528, 531, 590, 759
BlsI	GCNGC	6 cut(s)	498, 501, 529, 532, 591, 760
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	265, 787
BmrFI	CCNGG	1 cut(s)	737
BmsI	GCATC	3 cut(s)	98, 163, 706
BpiI	GAAGAC	2 cut(s)	106, 291
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	832
BpuMI	CCSGG	1 cut(s)	737
BsaBI	GATNNNNATC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	989
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	2 cut(s)	829, 957
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 156, 631
Bse1I	ACTGG	3 cut(s)	161, 401, 706
Bse8I	GATNNNNATC	1 cut(s)	825
BseAI	TCCGGA	1 cut(s)	829
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	826, 838
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	3 cut(s)	109, 156, 631
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	3 cut(s)	161, 401, 706
BseRI	GAGGAG	5 cut(s)	432, 435, 651, 654, 892
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	5 cut(s)	486, 508, 514, 576, 770
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	4 cut(s)	243, 472, 602, 670
BsiEI	CGRYCG	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	3 cut(s)	737, 830, 958
BslI	CCNNNNNNNGG	3 cut(s)	109, 156, 631
BsmAI	GTCTC	2 cut(s)	304, 989
BsnI	GGCC	4 cut(s)	243, 472, 602, 670
Bso31I	GGTCTC	1 cut(s)	989
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	466, 697
Bsp13I	TCCGGA	1 cut(s)	829
Bsp143I	GATC	5 cut(s)	9, 196, 619, 769, 928
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	2 cut(s)	479, 531
BspANI	GGCC	4 cut(s)	243, 472, 602, 670
BspCNI	CTCAG	1 cut(s)	370
BspEI	TCCGGA	1 cut(s)	829
BspLI	GGNNCC	2 cut(s)	265, 787
BspPI	GGATC	2 cut(s)	4, 764
BspQI	GCTCTTC	1 cut(s)	183
BspT104I	TTCGAA	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	989
BsrI	ACTGG	3 cut(s)	161, 401, 706
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	5 cut(s)	9, 196, 619, 769, 928
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	803
Bst4CI	ACNGT	3 cut(s)	681, 785, 950
Bst6I	CTCTTC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	241, 483, 894
BstDEI	CTNAG	4 cut(s)	302, 357, 745, 1003
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	826, 838
BstKTI	GATC	5 cut(s)	12, 199, 622, 772, 931
BstMAI	GTCTC	2 cut(s)	304, 989
BstMBI	GATC	5 cut(s)	9, 196, 619, 769, 928
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	2 cut(s)	478, 822
BstSCI	CCNGG	1 cut(s)	735
BstV1I	GCAGC	5 cut(s)	486, 508, 514, 576, 770
BstV2I	GAAGAC	2 cut(s)	106, 291
BstX2I	RGATCY	2 cut(s)	9, 769
BstXI	CCANNNNNNTGG	1 cut(s)	833
BstYI	RGATCY	2 cut(s)	9, 769
BstZI	CGGCCG	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	243, 472, 602, 670
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	826, 838
Cac8I	GCNNGC	3 cut(s)	241, 483, 894
Csp6I	GTAC	3 cut(s)	404, 871, 979
CviAII	CATG	5 cut(s)	245, 628, 650, 859, 991
CviQI	GTAC	3 cut(s)	404, 871, 979
DdeI	CTNAG	4 cut(s)	302, 357, 745, 1003
DpnI	GATC	5 cut(s)	11, 198, 621, 771, 930
DpnII	GATC	5 cut(s)	9, 196, 619, 769, 928
EaeI	YGGCCR	3 cut(s)	241, 600, 668
EagI	CGGCCG	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EclXI	CGGCCG	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	989
Eco32I	GATATC	1 cut(s)	545
Eco52I	CGGCCG	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	906, 987
EcoRI	GAATTC	2 cut(s)	213, 961
EcoRV	GATATC	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	5 cut(s)	248, 631, 653, 862, 994
FalI	AAGNNNNNCTT	4 cut(s)	866, 898, 889, 921
FatI	CATG	5 cut(s)	244, 627, 649, 858, 990
FauI	CCCGC	1 cut(s)	486
FauNDI	CATATG	1 cut(s)	579
FbaI	TGATCA	2 cut(s)	196, 928
Fnu4HI	GCNGC	6 cut(s)	497, 500, 528, 531, 590, 759
FokI	GGATG	2 cut(s)	813, 845
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	6 cut(s)	497, 500, 528, 531, 590, 759
FspBI	CTAG	2 cut(s)	260, 329
GluI	GCNGC	6 cut(s)	497, 500, 528, 531, 590, 759
HaeIII	GGCC	4 cut(s)	243, 472, 602, 670
HapII	CCGG	3 cut(s)	737, 830, 958
Hin1II	CATG	5 cut(s)	248, 631, 653, 862, 994
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	3 cut(s)	206, 323, 433
HpaII	CCGG	3 cut(s)	737, 830, 958
HphI	GGTGA	4 cut(s)	498, 542, 614, 926
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	8 cut(s)	19, 94, 219, 432, 699, 798, 967, 985
Hpy188III	TCNNGA	4 cut(s)	185, 210, 811, 830
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	7 cut(s)	58, 76, 299, 420, 513, 962, 1009
HpyCH4III	ACNGT	3 cut(s)	681, 785, 950
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	8 cut(s)	89, 256, 270, 485, 496, 719, 845, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	478, 822
HpyF3I	CTNAG	4 cut(s)	302, 357, 745, 1003
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	5 cut(s)	248, 631, 653, 862, 994
Kpn2I	TCCGGA	1 cut(s)	829
Ksp22I	TGATCA	2 cut(s)	196, 928
Kzo9I	GATC	5 cut(s)	9, 196, 619, 769, 928
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	879
Lsp1109I	GCAGC	5 cut(s)	486, 508, 514, 576, 770
LweI	GCATC	3 cut(s)	98, 163, 706
MaeI	CTAG	2 cut(s)	260, 329
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	1 cut(s)	950
MalI	GATC	5 cut(s)	11, 198, 621, 771, 930
MboI	GATC	5 cut(s)	9, 196, 619, 769, 928
MboII	GAAGA	8 cut(s)	19, 106, 170, 296, 384, 779, 862, 906
MfeI	CAATTG	2 cut(s)	222, 457
MflI	RGATCY	2 cut(s)	9, 769
MhlI	GDGCHC	2 cut(s)	466, 697
MlsI	TGGCCA	2 cut(s)	243, 670
MluNI	TGGCCA	2 cut(s)	243, 670
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	3 cut(s)	174, 582, 813
Mox20I	TGGCCA	2 cut(s)	243, 670
MroI	TCCGGA	1 cut(s)	829
MroXI	GAANNNNTTC	3 cut(s)	288, 382, 904
MscI	TGGCCA	2 cut(s)	243, 670
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	3 cut(s)	578, 654, 831
Msp20I	TGGCCA	2 cut(s)	243, 670
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	3 cut(s)	737, 830, 958
MspR9I	CCNGG	1 cut(s)	737
MunI	CAATTG	2 cut(s)	222, 457
MwoI	GCNNNNNNNGC	2 cut(s)	478, 822
NciI	CCSGG	1 cut(s)	737
NcoI	CCATGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	579
NdeII	GATC	5 cut(s)	9, 196, 619, 769, 928
NlaIII	CATG	5 cut(s)	248, 631, 653, 862, 994
NlaIV	GGNNCC	2 cut(s)	265, 787
NspV	TTCGAA	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	183
PdmI	GAANNNNTTC	3 cut(s)	288, 382, 904
PfeI	GAWTC	2 cut(s)	323, 433
PflMI	CCANNNNNTGG	2 cut(s)	156, 631
PkrI	GCNGC	6 cut(s)	498, 501, 529, 532, 591, 760
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	265, 787
PsuI	RGATCY	2 cut(s)	9, 769
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	3 cut(s)	405, 872, 980
RsaNI	GTAC	3 cut(s)	404, 871, 979
RseI	CAYNNNNRTG	3 cut(s)	578, 654, 831
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	6 cut(s)	497, 500, 528, 531, 590, 759
Sau3AI	GATC	5 cut(s)	9, 196, 619, 769, 928
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	2 cut(s)	466, 697
SfaNI	GCATC	3 cut(s)	98, 163, 706
SfuI	TTCGAA	1 cut(s)	413
SmiMI	CAYNNNNRTG	3 cut(s)	578, 654, 831
SmlI	CTYRAG	1 cut(s)	811
SmoI	CTYRAG	1 cut(s)	811
SsiI	CCGC	2 cut(s)	479, 531
SspMI	CTAG	2 cut(s)	260, 329
StyD4I	CCNGG	1 cut(s)	735
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	3 cut(s)	681, 785, 950
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	413, 436
TatI	WGTACW	3 cut(s)	403, 870, 978
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	2 cut(s)	323, 433
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TseI	GCWGC	5 cut(s)	496, 499, 527, 589, 758
TspDTI	ATGAA	6 cut(s)	156, 281, 582, 666, 869, 897
TspGWI	ACGGA	1 cut(s)	438
Van91I	CCANNNNNTGG	2 cut(s)	156, 631
XapI	RAATTY	4 cut(s)	213, 388, 775, 961
XmnI	GAANNNNTTC	3 cut(s)	288, 382, 904
XspI	CTAG	2 cut(s)	260, 329
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.