bHLH-MYC and R2R3-MYB transcription factors N-terminal
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53900 AT5G53900 AT5G53900 |
| fragaria_vesca | FvH4_3g19620 FvH4_3g19620 FvH4_3g19620 |
| malus_domestica | MD03G1230900.v1.1 MD11G1252200.v1.1 |
| prunus_persica | Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1 |
| pyrus_communis | pycom03g17860 pycom11g22370 |
| rosa_chinensis | RchiOBHm_Chr5g0032811 |
| rosa_laevigata | RLG00000033430 |
| rosa_multiflora | Rmu_sc0000986.1_g000046 |
| rosa_roxburghii | Rroxscaffold_1G00047240 |
| rosa_rugosa | Rorug05G0134000 Rorug05G0134100 |
| rosa_samantha | Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500 |
| rosa_wichuraiana | Rw5G020790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 736 |
| Acc36I | ACCTGC | 1 cut(s) | 736 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 402, 877 |
| AccIII | TCCGGA | 1 cut(s) | 1075 |
| AciI | CCGC | 2 cut(s) | 133, 771 |
| AclWI | GGATC | 3 cut(s) | 25, 254, 1010 |
| AcoI | YGGCCR | 3 cut(s) | 487, 846, 914 |
| AcsI | RAATTY | 4 cut(s) | 459, 634, 1021, 1210 |
| AcuI | CTGAAG | 5 cut(s) | 262, 549, 919, 1152, 1236 |
| AfaI | GTAC | 4 cut(s) | 651, 1118, 1202, 1229 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 67, 355, 402, 877 |
| AflIII | ACRYGT | 1 cut(s) | 1197 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 126 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1037, 1069 |
| AluBI | AGCT | 7 cut(s) | 186, 485, 607, 745, 970, 1062, 1128 |
| AluI | AGCT | 7 cut(s) | 186, 485, 607, 745, 970, 1062, 1128 |
| Alw26I | GTCTC | 1 cut(s) | 1238 |
| AlwI | GGATC | 3 cut(s) | 25, 254, 1010 |
| Ama87I | CYCGRG | 1 cut(s) | 136 |
| Aor13HI | TCCGGA | 1 cut(s) | 1075 |
| AoxI | GGCC | 6 cut(s) | 57, 69, 487, 716, 846, 914 |
| ApeKI | GCWGC | 7 cut(s) | 159, 742, 745, 773, 776, 835, 1004 |
| ApoI | RAATTY | 4 cut(s) | 459, 634, 1021, 1210 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 524, 556, 911, 943 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 534, 628 |
| AspS9I | GGNCC | 3 cut(s) | 58, 70, 120 |
| AsuC2I | CCSGG | 1 cut(s) | 983 |
| AsuHPI | GGTGA | 4 cut(s) | 744, 788, 860, 1172 |
| AsuII | TTCGAA | 1 cut(s) | 659 |
| AvaI | CYCGRG | 1 cut(s) | 136 |
| AvaII | GGWCC | 1 cut(s) | 120 |
| BaeGI | GKGCMC | 1 cut(s) | 943 |
| BalI | TGGCCA | 2 cut(s) | 489, 916 |
| BanII | GRGCYC | 2 cut(s) | 11, 712 |
| BauI | CACGAG | 2 cut(s) | 65, 1049 |
| BbsI | GAAGAC | 4 cut(s) | 106, 230, 352, 537 |
| BbvI | GCAGC | 7 cut(s) | 146, 732, 754, 760, 788, 822, 1016 |
| BccI | CCATC | 7 cut(s) | 49, 131, 200, 245, 316, 871, 1080 |
| BclI | TGATCA | 2 cut(s) | 442, 1174 |
| BcnI | CCSGG | 1 cut(s) | 983 |
| BcoDI | GTCTC | 1 cut(s) | 1238 |
| BfaI | CTAG | 2 cut(s) | 575, 785 |
| BfmI | CTRYAG | 1 cut(s) | 774 |
| BfuAI | ACCTGC | 1 cut(s) | 736 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 922 |
| BisI | GCNGC | 7 cut(s) | 160, 743, 746, 774, 777, 836, 1005 |
| BlsI | GCNGC | 7 cut(s) | 161, 744, 747, 775, 778, 837, 1006 |
| BmcAI | AGTACT | 1 cut(s) | 651 |
| Bme1390I | CCNGG | 1 cut(s) | 983 |
| Bme18I | GGWCC | 1 cut(s) | 120 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 126 |
| BmeT110I | CYCGRG | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 3 cut(s) | 58, 70, 120 |
| BmiI | GGNNCC | 1 cut(s) | 511 |
| BmrFI | CCNGG | 1 cut(s) | 983 |
| BmsI | GCATC | 4 cut(s) | 344, 409, 952, 1018 |
| BpiI | GAAGAC | 4 cut(s) | 106, 230, 352, 537 |
| Bpu10I | CCTNAGC | 1 cut(s) | 10 |
| Bpu14I | TTCGAA | 1 cut(s) | 659 |
| BpuEI | CTTGAG | 1 cut(s) | 1078 |
| BpuMI | CCSGG | 1 cut(s) | 983 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1071 |
| BsaI | GGTCTC | 1 cut(s) | 1238 |
| BsaJI | CCNNGG | 2 cut(s) | 217, 490 |
| BsaWI | WCCGGW | 1 cut(s) | 1075 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 67, 355, 402, 877 |
| Bse118I | RCCGGY | 1 cut(s) | 1220 |
| Bse1I | ACTGG | 4 cut(s) | 104, 407, 647, 952 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1071 |
| BseAI | TCCGGA | 1 cut(s) | 1075 |
| BseDI | CCNNGG | 2 cut(s) | 217, 490 |
| BseGI | GGATG | 5 cut(s) | 57, 123, 178, 967, 1072 |
| BseJI | GATNNNNATC | 1 cut(s) | 1071 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 67, 355, 402, 877 |
| BseMII | CTCAG | 4 cut(s) | 24, 88, 108, 617 |
| BseNI | ACTGG | 4 cut(s) | 104, 407, 647, 952 |
| BseRI | GAGGAG | 5 cut(s) | 678, 681, 897, 900, 1138 |
| BseSI | GKGCMC | 1 cut(s) | 943 |
| BseX3I | CGGCCG | 1 cut(s) | 846 |
| BseXI | GCAGC | 7 cut(s) | 146, 732, 754, 760, 788, 822, 1016 |
| Bsh1285I | CGRYCG | 1 cut(s) | 849 |
| BshFI | GGCC | 6 cut(s) | 59, 71, 489, 718, 848, 916 |
| BsiEI | CGRYCG | 1 cut(s) | 849 |
| BsiHKCI | CYCGRG | 1 cut(s) | 136 |
| BsiSI | CCGG | 3 cut(s) | 983, 1076, 1221 |
| BslFI | GGGAC | 1 cut(s) | 114 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 67, 355, 402, 877 |
| BsmAI | GTCTC | 1 cut(s) | 1238 |
| BsmFI | GGGAC | 1 cut(s) | 114 |
| BsnI | GGCC | 6 cut(s) | 59, 71, 489, 718, 848, 916 |
| Bso31I | GGTCTC | 1 cut(s) | 1238 |
| BsoBI | CYCGRG | 1 cut(s) | 136 |
| Bsp119I | TTCGAA | 1 cut(s) | 659 |
| Bsp1286I | GDGCHC | 3 cut(s) | 11, 712, 943 |
| Bsp13I | TCCGGA | 1 cut(s) | 1075 |
| Bsp1407I | TGTACA | 1 cut(s) | 1200 |
| Bsp143I | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| Bsp19I | CCATGG | 1 cut(s) | 490 |
| BspACI | CCGC | 2 cut(s) | 133, 771 |
| BspANI | GGCC | 6 cut(s) | 59, 71, 489, 718, 848, 916 |
| BspCNI | CTCAG | 4 cut(s) | 23, 87, 107, 616 |
| BspEI | TCCGGA | 1 cut(s) | 1075 |
| BspLI | GGNNCC | 1 cut(s) | 511 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspMI | ACCTGC | 1 cut(s) | 736 |
| BspPI | GGATC | 3 cut(s) | 25, 254, 1010 |
| BspQI | GCTCTTC | 1 cut(s) | 429 |
| BspT104I | TTCGAA | 1 cut(s) | 659 |
| BspTNI | GGTCTC | 1 cut(s) | 1238 |
| BsrFI | RCCGGY | 1 cut(s) | 1220 |
| BsrGI | TGTACA | 1 cut(s) | 1200 |
| BsrI | ACTGG | 4 cut(s) | 104, 407, 647, 952 |
| BssAI | RCCGGY | 1 cut(s) | 1220 |
| BssECI | CCNNGG | 2 cut(s) | 217, 490 |
| BssMI | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| BssSI | CACGAG | 2 cut(s) | 65, 1049 |
| BssT1I | CCWWGG | 1 cut(s) | 490 |
| Bst2BI | CACGAG | 2 cut(s) | 65, 1049 |
| Bst4CI | ACNGT | 1 cut(s) | 82 |
| Bst6I | CTCTTC | 2 cut(s) | 217, 429 |
| BstAUI | TGTACA | 1 cut(s) | 1200 |
| BstBI | TTCGAA | 1 cut(s) | 659 |
| BstC8I | GCNNGC | 2 cut(s) | 487, 1140 |
| BstDEI | CTNAG | 7 cut(s) | 10, 74, 94, 548, 603, 991, 1252 |
| BstDSI | CCRYGG | 1 cut(s) | 490 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 65 |
| BstF5I | GGATG | 5 cut(s) | 57, 123, 178, 967, 1072 |
| BstKTI | GATC | 6 cut(s) | 20, 262, 445, 868, 1018, 1177 |
| BstMAI | GTCTC | 1 cut(s) | 1238 |
| BstMBI | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| BstMCI | CGRYCG | 1 cut(s) | 849 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 922, 1068 |
| BstSCI | CCNGG | 1 cut(s) | 981 |
| BstSFI | CTRYAG | 1 cut(s) | 774 |
| BstSLI | GKGCMC | 1 cut(s) | 943 |
| BstV1I | GCAGC | 7 cut(s) | 146, 732, 754, 760, 788, 822, 1016 |
| BstV2I | GAAGAC | 4 cut(s) | 106, 230, 352, 537 |
| BstX2I | RGATCY | 2 cut(s) | 259, 1015 |
| BstYI | RGATCY | 2 cut(s) | 259, 1015 |
| BstZI | CGGCCG | 1 cut(s) | 846 |
| BsuRI | GGCC | 6 cut(s) | 59, 71, 489, 718, 848, 916 |
| BtgI | CCRYGG | 1 cut(s) | 490 |
| BtsCI | GGATG | 5 cut(s) | 57, 123, 178, 967, 1072 |
| BtsIMutI | CAGTG | 2 cut(s) | 943, 945 |
| BveI | ACCTGC | 1 cut(s) | 736 |
| Cac8I | GCNNGC | 2 cut(s) | 487, 1140 |
| Cfr10I | RCCGGY | 1 cut(s) | 1220 |
| Cfr13I | GGNCC | 3 cut(s) | 58, 70, 120 |
| Csp6I | GTAC | 4 cut(s) | 650, 1117, 1201, 1228 |
| CviAII | CATG | 5 cut(s) | 491, 874, 896, 1105, 1240 |
| CviQI | GTAC | 4 cut(s) | 650, 1117, 1201, 1228 |
| DdeI | CTNAG | 7 cut(s) | 10, 74, 94, 548, 603, 991, 1252 |
| DpnI | GATC | 6 cut(s) | 19, 261, 444, 867, 1017, 1176 |
| DpnII | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| DriI | GACNNNNNGTC | 1 cut(s) | 126 |
| EaeI | YGGCCR | 3 cut(s) | 487, 846, 914 |
| EagI | CGGCCG | 1 cut(s) | 846 |
| Eam1104I | CTCTTC | 2 cut(s) | 217, 429 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 126 |
| EarI | CTCTTC | 2 cut(s) | 217, 429 |
| EclXI | CGGCCG | 1 cut(s) | 846 |
| Eco130I | CCWWGG | 1 cut(s) | 490 |
| Eco24I | GRGCYC | 2 cut(s) | 11, 712 |
| Eco31I | GGTCTC | 1 cut(s) | 1238 |
| Eco47I | GGWCC | 1 cut(s) | 120 |
| Eco52I | CGGCCG | 1 cut(s) | 846 |
| Eco57I | CTGAAG | 5 cut(s) | 262, 549, 919, 1152, 1236 |
| Eco88I | CYCGRG | 1 cut(s) | 136 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 65 |
| EcoO109I | RGGNCCY | 1 cut(s) | 70 |
| EcoRI | GAATTC | 3 cut(s) | 459, 1021, 1210 |
| EcoT14I | CCWWGG | 1 cut(s) | 490 |
| EcoT38I | GRGCYC | 2 cut(s) | 11, 712 |
| ErhI | CCWWGG | 1 cut(s) | 490 |
| FaeI | CATG | 5 cut(s) | 494, 877, 899, 1108, 1243 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1112, 1144 |
| FaqI | GGGAC | 1 cut(s) | 114 |
| FatI | CATG | 5 cut(s) | 490, 873, 895, 1104, 1239 |
| FauI | CCCGC | 1 cut(s) | 140 |
| FauNDI | CATATG | 1 cut(s) | 825 |
| FbaI | TGATCA | 2 cut(s) | 442, 1174 |
| Fnu4HI | GCNGC | 7 cut(s) | 160, 743, 746, 774, 777, 836, 1005 |
| FokI | GGATG | 5 cut(s) | 64, 110, 185, 974, 1059 |
| FriOI | GRGCYC | 2 cut(s) | 11, 712 |
| Fsp4HI | GCNGC | 7 cut(s) | 160, 743, 746, 774, 777, 836, 1005 |
| FspBI | CTAG | 2 cut(s) | 575, 785 |
| GluI | GCNGC | 7 cut(s) | 160, 743, 746, 774, 777, 836, 1005 |
| HaeIII | GGCC | 6 cut(s) | 59, 71, 489, 718, 848, 916 |
| HapII | CCGG | 3 cut(s) | 983, 1076, 1221 |
| Hin1II | CATG | 5 cut(s) | 494, 877, 899, 1108, 1243 |
| HindIII | AAGCTT | 1 cut(s) | 968 |
| HinfI | GANTC | 3 cut(s) | 141, 452, 569 |
| HpaII | CCGG | 3 cut(s) | 983, 1076, 1221 |
| HphI | GGTGA | 4 cut(s) | 744, 788, 860, 1172 |
| Hpy166II | GTNNAC | 1 cut(s) | 1201 |
| Hpy188III | TCNNGA | 9 cut(s) | 12, 65, 118, 242, 431, 456, 1049, 1057, 1076 |
| Hpy8I | GTNNAC | 1 cut(s) | 1201 |
| HpyAV | CCTTC | 8 cut(s) | 71, 286, 308, 322, 545, 666, 759, 1258 |
| HpyCH4III | ACNGT | 1 cut(s) | 82 |
| HpyCH4IV | ACGT | 1 cut(s) | 1197 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 922, 1068 |
| HpyF3I | CTNAG | 7 cut(s) | 10, 74, 94, 548, 603, 991, 1252 |
| HpySE526I | ACGT | 1 cut(s) | 1197 |
| Hsp92II | CATG | 5 cut(s) | 494, 877, 899, 1108, 1243 |
| Kpn2I | TCCGGA | 1 cut(s) | 1075 |
| Ksp22I | TGATCA | 2 cut(s) | 442, 1174 |
| Kzo9I | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| LguI | GCTCTTC | 1 cut(s) | 429 |
| LmnI | GCTCC | 2 cut(s) | 33, 1125 |
| Lsp1109I | GCAGC | 7 cut(s) | 146, 732, 754, 760, 788, 822, 1016 |
| LweI | GCATC | 4 cut(s) | 344, 409, 952, 1018 |
| MaeI | CTAG | 2 cut(s) | 575, 785 |
| MaeII | ACGT | 1 cut(s) | 1197 |
| MalI | GATC | 6 cut(s) | 19, 261, 444, 867, 1017, 1176 |
| MboI | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| MfeI | CAATTG | 4 cut(s) | 45, 468, 503, 703 |
| MflI | RGATCY | 2 cut(s) | 259, 1015 |
| MhlI | GDGCHC | 3 cut(s) | 11, 712, 943 |
| MlsI | TGGCCA | 2 cut(s) | 489, 916 |
| MluNI | TGGCCA | 2 cut(s) | 489, 916 |
| MlyI | GAGTC | 2 cut(s) | 150, 461 |
| MmeI | TCCRAC | 2 cut(s) | 420, 1059 |
| Mox20I | TGGCCA | 2 cut(s) | 489, 916 |
| MroI | TCCGGA | 1 cut(s) | 1075 |
| MroXI | GAANNNNTTC | 2 cut(s) | 534, 628 |
| MscI | TGGCCA | 2 cut(s) | 489, 916 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 2 cut(s) | 824, 900 |
| Msp20I | TGGCCA | 2 cut(s) | 489, 916 |
| MspA1I | CMGCKG | 2 cut(s) | 745, 773 |
| MspI | CCGG | 3 cut(s) | 983, 1076, 1221 |
| MspR9I | CCNGG | 1 cut(s) | 983 |
| MunI | CAATTG | 4 cut(s) | 45, 468, 503, 703 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 922, 1068 |
| NciI | CCSGG | 1 cut(s) | 983 |
| NcoI | CCATGG | 1 cut(s) | 490 |
| NdeI | CATATG | 1 cut(s) | 825 |
| NdeII | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| NlaIII | CATG | 5 cut(s) | 494, 877, 899, 1108, 1243 |
| NlaIV | GGNNCC | 1 cut(s) | 511 |
| NmeAIII | GCCGAG | 1 cut(s) | 242 |
| NspV | TTCGAA | 1 cut(s) | 659 |
| PaqCI | CACCTGC | 1 cut(s) | 736 |
| PciSI | GCTCTTC | 1 cut(s) | 429 |
| PdmI | GAANNNNTTC | 2 cut(s) | 534, 628 |
| PfeI | GAWTC | 1 cut(s) | 569 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 402, 877 |
| PkrI | GCNGC | 7 cut(s) | 161, 744, 747, 775, 778, 837, 1006 |
| PleI | GAGTC | 2 cut(s) | 149, 460 |
| PpsI | GAGTC | 2 cut(s) | 149, 460 |
| PspN4I | GGNNCC | 1 cut(s) | 511 |
| PspPI | GGNCC | 3 cut(s) | 58, 70, 120 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PsuI | RGATCY | 2 cut(s) | 259, 1015 |
| PvuII | CAGCTG | 1 cut(s) | 745 |
| RsaI | GTAC | 4 cut(s) | 651, 1118, 1202, 1229 |
| RsaNI | GTAC | 4 cut(s) | 650, 1117, 1201, 1228 |
| RseI | CAYNNNNRTG | 2 cut(s) | 824, 900 |
| SapI | GCTCTTC | 1 cut(s) | 429 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 7 cut(s) | 160, 743, 746, 774, 777, 836, 1005 |
| Sau3AI | GATC | 6 cut(s) | 17, 259, 442, 865, 1015, 1174 |
| Sau96I | GGNCC | 3 cut(s) | 58, 70, 120 |
| ScaI | AGTACT | 1 cut(s) | 651 |
| SchI | GAGTC | 2 cut(s) | 150, 461 |
| ScrFI | CCNGG | 1 cut(s) | 983 |
| SduI | GDGCHC | 3 cut(s) | 11, 712, 943 |
| SfaNI | GCATC | 4 cut(s) | 344, 409, 952, 1018 |
| SfcI | CTRYAG | 1 cut(s) | 774 |
| SfuI | TTCGAA | 1 cut(s) | 659 |
| SinI | GGWCC | 1 cut(s) | 120 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 824, 900 |
| SmlI | CTYRAG | 1 cut(s) | 1057 |
| SmoI | CTYRAG | 1 cut(s) | 1057 |
| SsiI | CCGC | 2 cut(s) | 133, 771 |
| SspMI | CTAG | 2 cut(s) | 575, 785 |
| StyD4I | CCNGG | 1 cut(s) | 981 |
| StyI | CCWWGG | 1 cut(s) | 490 |
| TaaI | ACNGT | 1 cut(s) | 82 |
| TaiI | ACGT | 1 cut(s) | 1200 |
| TaqI | TCGA | 3 cut(s) | 450, 659, 682 |
| TatI | WGTACW | 4 cut(s) | 649, 1116, 1200, 1227 |
| TfiI | GAWTC | 1 cut(s) | 569 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 2 cut(s) | 943, 952 |
| TseI | GCWGC | 7 cut(s) | 159, 742, 745, 773, 776, 835, 1004 |
| TspDTI | ATGAA | 4 cut(s) | 402, 527, 912, 1115 |
| TspGWI | ACGGA | 1 cut(s) | 116 |
| TspRI | CASTG | 2 cut(s) | 943, 952 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 402, 877 |
| VpaK11BI | GGWCC | 1 cut(s) | 120 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 65 |
| XapI | RAATTY | 4 cut(s) | 459, 634, 1021, 1210 |
| XmnI | GAANNNNTTC | 2 cut(s) | 534, 628 |
| XspI | CTAG | 2 cut(s) | 575, 785 |
| ZrmI | AGTACT | 1 cut(s) | 651 |