Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006807

Physical Location & Seq

Genomic Coordinates Forward (+)

26748230 .. 26750714

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGATGGCCCTTCACGAGGCCCTCAGAACCGTCTGTCTTAACTCAGACTGGACTTACTCTGTCTTCTGGACCATCCGTCCACGCCCGAGAGTCAGGGGTGGTAATGGCTGCAAGGTTGGGGATGATAATGGTAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGAGTTGCAGATTGTCTTCCAGACATTGATGGAGAAGATCCTGTCAGAAAATCCTTCAGCAAAATGTCCATTCAACTATATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTGTTCAAAGAACCAACAGAGTGCGAACCAAACATCTCCAACTACTGGCAAAGTTCATTCGATGCTCTTCCTCCTGAATGGACTGATCAGTTCGAGTCAGGAATACAGACAATTGCTGTAATTCAAGCTGGCCATGGACTTCTGCAATTGGGTTCCTGCAAAATTATACCTGAAGACCTTCATTTTGTGCTAAGAATGAGGCACACCTTTGAATCTCTAGGCTACCAATCTGGTTTCTACCTATCTCAGCTTTTTGCTTCAAACAGAAACAATTCAAATTCCTCTGTTCCAGTACTTCCTTCGAAGCAATCCCCCATTCCAATTCGACCTCCTCCTCCTTTGTTCAATTGGGCTCAAAGGCCACTCCCACCTGCAACATCCATGCAGCTGCCTTCACCCAATTTTCAAAACTCCGCTGCAGCCAGACTAGGGTATCCTCACCAACCCAACAAAGACGAAAGTACCCATATGTTTTTGCTGCCTCATTCGGCCGAAACCCAAATGGGAGATCACCACATGATGGGAGGAGGAGAACAGCATGAAAATGACATCAAGTGGCCAAATGGGCTGTCTTTCTTCAGTGCCCTCACTGGACGAAGTGAGGATGCAAAGCTTTTGTTCAACCCGGAGAACTTAGGAAACAAAGCAGCAGAGGAAGATCCAAATTCAGATGCTTCCAACAATCCCAATCACGAGTTCTTGAGCTTGGATTGCCATCCGGATAGTAGTAATGCAAGGAAGATGAACATGGAAAATAAGTACAAGAGGAGCTTCACTTTGCCTGCAAGAATGACCTCATCATCTTCAACTTCAGTTGATCATCACCACCAGCACCAGAACGTGTACAATCGGAATTCTGAAGCCGGTATGTACTCTGATGTCATGGAAACCTTCTTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

402

Amino Acids

45.27

Weight (kDa)

5.85

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	4 - 57	1e-08	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N	PF14215	73 - 172	8.1e-17	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53900 AT5G53900 AT5G53900
fragaria_vesca	FvH4_3g19620 FvH4_3g19620 FvH4_3g19620
malus_domestica	MD03G1230900.v1.1 MD11G1252200.v1.1
prunus_persica	Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1
pyrus_communis	pycom03g17860 pycom11g22370
rosa_chinensis	RchiOBHm_Chr5g0032811
rosa_laevigata	RLG00000033430
rosa_multiflora	Rmu_sc0000986.1_g000046
rosa_roxburghii	Rroxscaffold_1G00047240
rosa_rugosa	Rorug05G0134000 Rorug05G0134100
rosa_samantha	Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500
rosa_wichuraiana	Rw5G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	685
Acc36I	ACCTGC	1 cut(s)	685
AccB7I	CCANNNNNTGG	2 cut(s)	351, 826
AccIII	TCCGGA	1 cut(s)	1024
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	2 cut(s)	203, 959
AcoI	YGGCCR	3 cut(s)	436, 795, 863
AcsI	RAATTY	3 cut(s)	583, 970, 1159
AcuI	CTGAAG	5 cut(s)	211, 498, 868, 1101, 1185
AfaI	GTAC	5 cut(s)	600, 769, 1067, 1151, 1178
AfiI	CCNNNNNNNGG	5 cut(s)	16, 304, 351, 735, 826
AflIII	ACRYGT	1 cut(s)	1146
AhdI	GACNNNNNGTC	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	986, 1018
AluBI	AGCT	7 cut(s)	135, 434, 556, 694, 919, 1011, 1077
AluI	AGCT	7 cut(s)	135, 434, 556, 694, 919, 1011, 1077
AlwI	GGATC	2 cut(s)	203, 959
Ama87I	CYCGRG	1 cut(s)	85
Aor13HI	TCCGGA	1 cut(s)	1024
AoxI	GGCC	6 cut(s)	6, 18, 436, 665, 795, 863
ApeKI	GCWGC	7 cut(s)	108, 691, 694, 722, 725, 784, 953
ApoI	RAATTY	3 cut(s)	583, 970, 1159
ArsI	GACNNNNNNTTYG	4 cut(s)	473, 505, 860, 892
Asp700I	GAANNNNTTC	2 cut(s)	483, 577
AspS9I	GGNCC	3 cut(s)	7, 19, 69
AsuC2I	CCSGG	1 cut(s)	932
AsuHPI	GGTGA	4 cut(s)	693, 737, 809, 1121
AsuII	TTCGAA	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	69
BaeGI	GKGCMC	1 cut(s)	892
BaeI	ACNNNNGTAYC	4 cut(s)	722, 751, 755, 784
BalI	TGGCCA	2 cut(s)	438, 865
BanII	GRGCYC	1 cut(s)	661
BauI	CACGAG	2 cut(s)	14, 998
BbsI	GAAGAC	3 cut(s)	55, 179, 486
BbvI	GCAGC	7 cut(s)	95, 681, 703, 709, 737, 771, 965
BccI	CCATC	6 cut(s)	80, 149, 194, 265, 820, 1029
BciVI	GTATCC	1 cut(s)	750
BclI	TGATCA	2 cut(s)	391, 1123
BcnI	CCSGG	1 cut(s)	932
BfaI	CTAG	2 cut(s)	524, 734
BfmI	CTRYAG	1 cut(s)	723
BfuAI	ACCTGC	1 cut(s)	685
BfuI	GTATCC	1 cut(s)	750
BglI	GCCNNNNNGGC	1 cut(s)	871
BisI	GCNGC	7 cut(s)	109, 692, 695, 723, 726, 785, 954
BlsI	GCNGC	7 cut(s)	110, 693, 696, 724, 727, 786, 955
BmcAI	AGTACT	1 cut(s)	600
Bme1390I	CCNGG	1 cut(s)	932
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	7, 19, 69
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	1 cut(s)	932
BmsI	GCATC	4 cut(s)	293, 358, 901, 967
BpiI	GAAGAC	3 cut(s)	55, 179, 486
Bpu14I	TTCGAA	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	1027
BpuMI	CCSGG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaJI	CCNNGG	2 cut(s)	166, 439
BsaWI	WCCGGW	1 cut(s)	1024
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 304, 351, 735, 826
Bse118I	RCCGGY	1 cut(s)	1169
Bse1I	ACTGG	4 cut(s)	53, 356, 596, 901
Bse8I	GATNNNNATC	1 cut(s)	1020
BseAI	TCCGGA	1 cut(s)	1024
BseDI	CCNNGG	2 cut(s)	166, 439
BseGI	GGATG	5 cut(s)	72, 127, 683, 916, 1021
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	5 cut(s)	16, 304, 351, 735, 826
BseMII	CTCAG	3 cut(s)	37, 57, 566
BseNI	ACTGG	4 cut(s)	53, 356, 596, 901
BseRI	GAGGAG	5 cut(s)	627, 630, 846, 849, 1087
BseSI	GKGCMC	1 cut(s)	892
BseX3I	CGGCCG	1 cut(s)	795
BseXI	GCAGC	7 cut(s)	95, 681, 703, 709, 737, 771, 965
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	6 cut(s)	8, 20, 438, 667, 797, 865
BsiEI	CGRYCG	1 cut(s)	798
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	932, 1025, 1170
BslI	CCNNNNNNNGG	5 cut(s)	16, 304, 351, 735, 826
BsnI	GGCC	6 cut(s)	8, 20, 438, 667, 797, 865
BsoBI	CYCGRG	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	661, 892
Bsp13I	TCCGGA	1 cut(s)	1024
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	5 cut(s)	208, 391, 814, 964, 1123
Bsp19I	CCATGG	1 cut(s)	439
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	6 cut(s)	8, 20, 438, 667, 797, 865
BspCNI	CTCAG	3 cut(s)	36, 56, 565
BspEI	TCCGGA	1 cut(s)	1024
BspLI	GGNNCC	1 cut(s)	460
BspMAI	CTGCAG	1 cut(s)	727
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	2 cut(s)	203, 959
BspQI	GCTCTTC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	608
BsrFI	RCCGGY	1 cut(s)	1169
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	4 cut(s)	53, 356, 596, 901
BssAI	RCCGGY	1 cut(s)	1169
BssECI	CCNNGG	2 cut(s)	166, 439
BssMI	GATC	5 cut(s)	208, 391, 814, 964, 1123
BssSI	CACGAG	2 cut(s)	14, 998
BssT1I	CCWWGG	1 cut(s)	439
Bst2BI	CACGAG	2 cut(s)	14, 998
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	166, 378
BstAUI	TGTACA	1 cut(s)	1149
BstBI	TTCGAA	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	436, 1089
BstDEI	CTNAG	6 cut(s)	23, 43, 497, 552, 940, 1201
BstDSI	CCRYGG	1 cut(s)	439
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	5 cut(s)	72, 127, 683, 916, 1021
BstKTI	GATC	5 cut(s)	211, 394, 817, 967, 1126
BstMBI	GATC	5 cut(s)	208, 391, 814, 964, 1123
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	2 cut(s)	871, 1017
BstSCI	CCNGG	1 cut(s)	930
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	7 cut(s)	95, 681, 703, 709, 737, 771, 965
BstV2I	GAAGAC	3 cut(s)	55, 179, 486
BstX2I	RGATCY	2 cut(s)	208, 964
BstYI	RGATCY	2 cut(s)	208, 964
BstZI	CGGCCG	1 cut(s)	795
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	6 cut(s)	8, 20, 438, 667, 797, 865
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	5 cut(s)	72, 127, 683, 916, 1021
BtsIMutI	CAGTG	2 cut(s)	892, 894
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	2 cut(s)	436, 1089
Cfr10I	RCCGGY	1 cut(s)	1169
Cfr13I	GGNCC	3 cut(s)	7, 19, 69
Csp6I	GTAC	5 cut(s)	599, 768, 1066, 1150, 1177
CviAII	CATG	6 cut(s)	440, 688, 823, 845, 1054, 1189
CviQI	GTAC	5 cut(s)	599, 768, 1066, 1150, 1177
DdeI	CTNAG	6 cut(s)	23, 43, 497, 552, 940, 1201
DpnI	GATC	5 cut(s)	210, 393, 816, 966, 1125
DpnII	GATC	5 cut(s)	208, 391, 814, 964, 1123
DriI	GACNNNNNGTC	1 cut(s)	75
EaeI	YGGCCR	3 cut(s)	436, 795, 863
EagI	CGGCCG	1 cut(s)	795
Eam1104I	CTCTTC	2 cut(s)	166, 378
Eam1105I	GACNNNNNGTC	1 cut(s)	75
EarI	CTCTTC	2 cut(s)	166, 378
EclXI	CGGCCG	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	795
Eco57I	CTGAAG	5 cut(s)	211, 498, 868, 1101, 1185
Eco88I	CYCGRG	1 cut(s)	85
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	1159
EcoT14I	CCWWGG	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	6 cut(s)	443, 691, 826, 848, 1057, 1192
FalI	AAGNNNNNCTT	2 cut(s)	1061, 1093
FatI	CATG	6 cut(s)	439, 687, 822, 844, 1053, 1188
FauNDI	CATATG	1 cut(s)	774
FbaI	TGATCA	2 cut(s)	391, 1123
Fnu4HI	GCNGC	7 cut(s)	109, 692, 695, 723, 726, 785, 954
FokI	GGATG	5 cut(s)	59, 134, 670, 923, 1008
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	7 cut(s)	109, 692, 695, 723, 726, 785, 954
FspBI	CTAG	2 cut(s)	524, 734
GluI	GCNGC	7 cut(s)	109, 692, 695, 723, 726, 785, 954
HaeIII	GGCC	6 cut(s)	8, 20, 438, 667, 797, 865
HapII	CCGG	3 cut(s)	932, 1025, 1170
Hin1II	CATG	6 cut(s)	443, 691, 826, 848, 1057, 1192
HindIII	AAGCTT	1 cut(s)	917
HinfI	GANTC	3 cut(s)	90, 401, 518
HpaII	CCGG	3 cut(s)	932, 1025, 1170
HphI	GGTGA	4 cut(s)	693, 737, 809, 1121
Hpy166II	GTNNAC	2 cut(s)	80, 1150
Hpy188I	TCNGA	8 cut(s)	26, 46, 218, 289, 976, 1158, 1165, 1183
Hpy188III	TCNNGA	8 cut(s)	14, 67, 191, 380, 405, 998, 1006, 1025
Hpy8I	GTNNAC	2 cut(s)	80, 1150
HpyAV	CCTTC	8 cut(s)	20, 235, 257, 271, 494, 615, 708, 1207
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	1146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	871, 1017
HpyF3I	CTNAG	6 cut(s)	23, 43, 497, 552, 940, 1201
HpySE526I	ACGT	1 cut(s)	1146
Hsp92II	CATG	6 cut(s)	443, 691, 826, 848, 1057, 1192
Kpn2I	TCCGGA	1 cut(s)	1024
Ksp22I	TGATCA	2 cut(s)	391, 1123
Kzo9I	GATC	5 cut(s)	208, 391, 814, 964, 1123
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	1074
Lsp1109I	GCAGC	7 cut(s)	95, 681, 703, 709, 737, 771, 965
LweI	GCATC	4 cut(s)	293, 358, 901, 967
MaeI	CTAG	2 cut(s)	524, 734
MaeII	ACGT	1 cut(s)	1146
MalI	GATC	5 cut(s)	210, 393, 816, 966, 1125
MboI	GATC	5 cut(s)	208, 391, 814, 964, 1123
MfeI	CAATTG	3 cut(s)	417, 452, 652
MflI	RGATCY	2 cut(s)	208, 964
MhlI	GDGCHC	2 cut(s)	661, 892
MlsI	TGGCCA	2 cut(s)	438, 865
MluNI	TGGCCA	2 cut(s)	438, 865
MlyI	GAGTC	2 cut(s)	99, 410
MmeI	TCCRAC	2 cut(s)	369, 1008
Mox20I	TGGCCA	2 cut(s)	438, 865
MroI	TCCGGA	1 cut(s)	1024
MroXI	GAANNNNTTC	2 cut(s)	483, 577
MscI	TGGCCA	2 cut(s)	438, 865
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	849
Msp20I	TGGCCA	2 cut(s)	438, 865
MspA1I	CMGCKG	2 cut(s)	694, 722
MspI	CCGG	3 cut(s)	932, 1025, 1170
MspR9I	CCNGG	1 cut(s)	932
MunI	CAATTG	3 cut(s)	417, 452, 652
MwoI	GCNNNNNNNGC	2 cut(s)	871, 1017
NciI	CCSGG	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	439
NdeI	CATATG	1 cut(s)	774
NdeII	GATC	5 cut(s)	208, 391, 814, 964, 1123
NlaIII	CATG	6 cut(s)	443, 691, 826, 848, 1057, 1192
NlaIV	GGNNCC	1 cut(s)	460
NmeAIII	GCCGAG	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	378
PdmI	GAANNNNTTC	2 cut(s)	483, 577
PfeI	GAWTC	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	351, 826
PkrI	GCNGC	7 cut(s)	110, 693, 696, 724, 727, 786, 955
PleI	GAGTC	2 cut(s)	98, 409
PpsI	GAGTC	2 cut(s)	98, 409
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	7, 19, 69
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	2 cut(s)	208, 964
PvuII	CAGCTG	1 cut(s)	694
RsaI	GTAC	5 cut(s)	600, 769, 1067, 1151, 1178
RsaNI	GTAC	5 cut(s)	599, 768, 1066, 1150, 1177
RseI	CAYNNNNRTG	1 cut(s)	849
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	7 cut(s)	109, 692, 695, 723, 726, 785, 954
Sau3AI	GATC	5 cut(s)	208, 391, 814, 964, 1123
Sau96I	GGNCC	3 cut(s)	7, 19, 69
ScaI	AGTACT	1 cut(s)	600
SchI	GAGTC	2 cut(s)	99, 410
ScrFI	CCNGG	1 cut(s)	932
SduI	GDGCHC	2 cut(s)	661, 892
SfaNI	GCATC	4 cut(s)	293, 358, 901, 967
SfcI	CTRYAG	1 cut(s)	723
SfuI	TTCGAA	1 cut(s)	608
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	1 cut(s)	1006
SmoI	CTYRAG	1 cut(s)	1006
SsiI	CCGC	1 cut(s)	720
SspMI	CTAG	2 cut(s)	524, 734
StyD4I	CCNGG	1 cut(s)	930
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	1149
TaqI	TCGA	4 cut(s)	366, 399, 608, 631
TatI	WGTACW	4 cut(s)	598, 1065, 1149, 1176
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	892, 901
TseI	GCWGC	7 cut(s)	108, 691, 694, 722, 725, 784, 953
TspDTI	ATGAA	4 cut(s)	351, 476, 861, 1064
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	892, 901
Van91I	CCANNNNNTGG	2 cut(s)	351, 826
VpaK11BI	GGWCC	1 cut(s)	69
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	3 cut(s)	583, 970, 1159
XmnI	GAANNNNTTC	2 cut(s)	483, 577
XspI	CTAG	2 cut(s)	524, 734
ZrmI	AGTACT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.