Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006807

Physical Location & Seq

Genomic Coordinates Forward (+)

24123818 .. 24126595

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G207300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTGGGCTCAGGAGCAACAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTCCATGAGGCCCTCAGAAGCGTTTGTCTCAACACAGACTGGACTTACTCTGTCTTCTGGACCATCCGTCCACGCCCGAGAGTCAGAGGAGGTAATGGCTGCAAGGTTGGGGATGACAATGGCAGTTTGATGTTGATGTGGGAAGATGGGTTTTGTCGAGGAAGAGTTTCATCAGATTGTCTTGAAGATATTGACGGAGAAGATCCTGTCAGGAAAGCCTTCAGCAAAATGTCCATTCAGCTGTATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTTTTCAAAGAACCTACAGAGTGTGAACCAAACATCTCCAACTACTGGCAAAGTTCTTTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTTGAGTCAGGCATTCAGACAATTGCTGTAATTCAAGCTGGTCATGGTCTTCTGCAGTTGGGCTCCTGCAAGATTATACCAGAAGATCTTCACTTTGTGCTAAGAATGAGGCATACCTTTGAGTCTCTAGGCTACCAATCTGGTTTTTACCTCTCCCAACTATTTTCCTCTACCAGAAACAACTCTGCCTCATCAGTGCTTCCTTCAAAGCAGTCCCCAATTCCGATCCGGCCTCCTCCTCCTCTCTTCAATTGGGCTCAAAGGCCTCTTCCATCTGCAACAGCTATGCAGCTGCCTTCACCCAACAGTTTTCAGAACTCTGCAGCCAGACTTGGATACAATCCACAAGCCAATAAAGATGAGACACACATGTTTTTGCTGCCTCATTCAGCCGAAACACAAATGGGAGGAGACATGATGGGAGGAGGAGGAGGAGGAGGAGAGCATGAAAATGACATCAAATGGCCAAATGGATTGTCTTTCTTCAATGCCCTCACGGGACGTTCCGATGATGCAAAGCTTTTGTTCAATCCGGAGAACTTGGGAAACAAAGGTGGAGACGAAAATCACCACCACAACCCGAATCCAAACTCAGATCGTGCTTCGAATCACAACGAGTTTTTGAGCTTGGATTGCCACCCGGATAGTAGTGCAAGGAAGAACATGGAGAACAAGTACAAGAGGAGCTTTACTTTGCCTGCAAGAATGGCTTCATCGTCTTCAAACTCAGTTGATCACCATCAGCACCAATCTGTGGGGTATCGAAATGCCGAAGCTGGTATGTACTCTGATGTTATGGAGACCTTCTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

420

Amino Acids

46.49

Weight (kDa)

5.89

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53900 AT5G53900 AT5G53900
fragaria_vesca	FvH4_3g19620 FvH4_3g19620 FvH4_3g19620
malus_domestica	MD03G1230900.v1.1 MD11G1252200.v1.1
prunus_persica	Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1
pyrus_communis	pycom03g17860 pycom11g22370
rosa_chinensis	RchiOBHm_Chr5g0032811
rosa_laevigata	RLG00000033430
rosa_multiflora	Rmu_sc0000986.1_g000046
rosa_roxburghii	Rroxscaffold_1G00047240
rosa_rugosa	Rorug05G0134000 Rorug05G0134100
rosa_samantha	Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500
rosa_wichuraiana	Rw5G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	399, 1198
AccIII	TCCGGA	1 cut(s)	976
AclWI	GGATC	2 cut(s)	251, 664
AcoI	YGGCCR	1 cut(s)	908
AcuI	CTGAAG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	1121, 1229
AfiI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1198
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	8 cut(s)	239, 361, 479, 651, 694, 931, 973, 1167
AhdI	GACNNNNNGTC	1 cut(s)	120
AluBI	AGCT	9 cut(s)	38, 295, 482, 728, 736, 964, 1071, 1131, 1220
AluI	AGCT	9 cut(s)	38, 295, 482, 728, 736, 964, 1071, 1131, 1220
Alw26I	GTCTC	6 cut(s)	86, 573, 800, 849, 996, 1238
AlwI	GGATC	2 cut(s)	251, 664
Ama87I	CYCGRG	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	976
AoxI	GGCC	5 cut(s)	51, 63, 674, 707, 908
ApeKI	GCWGC	5 cut(s)	153, 733, 736, 767, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	905, 937
Asp700I	GAANNNNTTC	4 cut(s)	220, 272, 531, 1153
AspS9I	GGNCC	3 cut(s)	52, 64, 114
AsuC2I	CCSGG	1 cut(s)	1085
AsuHPI	GGTGA	3 cut(s)	735, 1004, 1172
AsuII	TTCGAA	1 cut(s)	1049
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	910
BanII	GRGCYC	3 cut(s)	11, 509, 703
BbsI	GAAGAC	3 cut(s)	100, 485, 1155
BbvI	GCAGC	5 cut(s)	140, 723, 745, 779, 810
BccI	CCATC	7 cut(s)	43, 125, 194, 313, 724, 856, 1191
BciVI	GTATCC	1 cut(s)	773
BclI	TGATCA	2 cut(s)	439, 1177
BcnI	CCSGG	1 cut(s)	1085
BcoDI	GTCTC	6 cut(s)	86, 573, 800, 849, 996, 1238
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	3 cut(s)	369, 497, 765
BfuI	GTATCC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	5 cut(s)	154, 734, 737, 768, 824
BlsI	GCNGC	5 cut(s)	155, 735, 738, 769, 825
Bme1390I	CCNGG	1 cut(s)	1085
Bme18I	GGWCC	1 cut(s)	114
BmeRI	GACNNNNNGTC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	52, 64, 114
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	1085
BmsI	GCATC	3 cut(s)	341, 406, 946
BpiI	GAAGAC	3 cut(s)	100, 485, 1155
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	1049
BpuMI	CCSGG	1 cut(s)	1085
BsaBI	GATNNNNATC	1 cut(s)	1182
BsaI	GGTCTC	1 cut(s)	1238
BsaWI	WCCGGW	1 cut(s)	976
BsaXI	ACNNNNNCTCC	2 cut(s)	1103, 1133
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1198
Bse1I	ACTGG	2 cut(s)	98, 404
Bse8I	GATNNNNATC	1 cut(s)	1182
BseAI	TCCGGA	1 cut(s)	976
BseGI	GGATG	3 cut(s)	51, 117, 172
BseJI	GATNNNNATC	1 cut(s)	1182
BseLI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1198
BseMII	CTCAG	4 cut(s)	24, 82, 1050, 1185
BseNI	ACTGG	2 cut(s)	98, 404
BseXI	GCAGC	5 cut(s)	140, 723, 745, 779, 810
BshFI	GGCC	5 cut(s)	53, 65, 676, 709, 910
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	673, 977, 1085
BslFI	GGGAC	2 cut(s)	643, 957
BslI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1198
BsmAI	GTCTC	6 cut(s)	86, 573, 800, 849, 996, 1238
BsmBI	CGTCTC	1 cut(s)	996
BsmFI	GGGAC	2 cut(s)	643, 957
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	5 cut(s)	53, 65, 676, 709, 910
Bso31I	GGTCTC	1 cut(s)	1238
BsoBI	CYCGRG	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	1049
Bsp1286I	GDGCHC	3 cut(s)	11, 509, 703
Bsp13I	TCCGGA	1 cut(s)	976
Bsp143I	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
BspANI	GGCC	5 cut(s)	53, 65, 676, 709, 910
BspCNI	CTCAG	4 cut(s)	23, 81, 1049, 1184
BspEI	TCCGGA	1 cut(s)	976
BspLI	GGNNCC	1 cut(s)	508
BspMAI	CTGCAG	2 cut(s)	501, 769
BspPI	GGATC	2 cut(s)	251, 664
BspQI	GCTCTTC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	1049
BspTNI	GGTCTC	1 cut(s)	1238
BsrI	ACTGG	2 cut(s)	98, 404
BssMI	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
Bst4CI	ACNGT	1 cut(s)	752
Bst6I	CTCTTC	4 cut(s)	211, 426, 695, 717
BstBI	TTCGAA	1 cut(s)	1049
BstC8I	GCNNGC	1 cut(s)	1143
BstDEI	CTNAG	5 cut(s)	10, 68, 545, 1036, 1171
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	51, 117, 172
BstKTI	GATC	6 cut(s)	259, 442, 532, 672, 1042, 1180
BstMAI	GTCTC	6 cut(s)	86, 573, 800, 849, 996, 1238
BstMBI	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
BstMWI	GCNNNNNNNGC	2 cut(s)	1077, 1151
BstNSI	RCATGY	1 cut(s)	817
BstSCI	CCNGG	1 cut(s)	1083
BstSFI	CTRYAG	3 cut(s)	369, 497, 765
BstV1I	GCAGC	5 cut(s)	140, 723, 745, 779, 810
BstV2I	GAAGAC	3 cut(s)	100, 485, 1155
BstX2I	RGATCY	2 cut(s)	256, 529
BstYI	RGATCY	2 cut(s)	256, 529
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	5 cut(s)	53, 65, 676, 709, 910
BtsCI	GGATG	3 cut(s)	51, 117, 172
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	1143
Cfr13I	GGNCC	3 cut(s)	52, 64, 114
Csp6I	GTAC	2 cut(s)	1120, 1228
CviAII	CATG	6 cut(s)	59, 488, 814, 859, 890, 1108
CviQI	GTAC	2 cut(s)	1120, 1228
DdeI	CTNAG	5 cut(s)	10, 68, 545, 1036, 1171
DpnI	GATC	6 cut(s)	258, 441, 531, 671, 1041, 1179
DpnII	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
DraIII	CACNNNGTG	1 cut(s)	541
DriI	GACNNNNNGTC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	908
Eam1104I	CTCTTC	4 cut(s)	211, 426, 695, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	120
EarI	CTCTTC	4 cut(s)	211, 426, 695, 717
Eco147I	AGGCCT	1 cut(s)	709
Eco24I	GRGCYC	3 cut(s)	11, 509, 703
Eco31I	GGTCTC	1 cut(s)	1238
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT38I	GRGCYC	3 cut(s)	11, 509, 703
Esp3I	CGTCTC	1 cut(s)	996
FaeI	CATG	6 cut(s)	62, 491, 817, 862, 893, 1111
FalI	AAGNNNNNCTT	4 cut(s)	1115, 1147, 1138, 1170
FaqI	GGGAC	2 cut(s)	643, 957
FatI	CATG	6 cut(s)	58, 487, 813, 858, 889, 1107
FbaI	TGATCA	2 cut(s)	439, 1177
Fnu4HI	GCNGC	5 cut(s)	154, 734, 737, 768, 824
FokI	GGATG	3 cut(s)	58, 104, 179
FriOI	GRGCYC	3 cut(s)	11, 509, 703
Fsp4HI	GCNGC	5 cut(s)	154, 734, 737, 768, 824
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	5 cut(s)	154, 734, 737, 768, 824
HaeIII	GGCC	5 cut(s)	53, 65, 676, 709, 910
HapII	CCGG	3 cut(s)	673, 977, 1085
Hin1II	CATG	6 cut(s)	62, 491, 817, 862, 893, 1111
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	5 cut(s)	135, 449, 566, 1027, 1051
HpaII	CCGG	3 cut(s)	673, 977, 1085
HphI	GGTGA	3 cut(s)	735, 1004, 1172
Hpy166II	GTNNAC	2 cut(s)	125, 380
Hpy188III	TCNNGA	6 cut(s)	12, 112, 236, 265, 428, 977
Hpy8I	GTNNAC	2 cut(s)	125, 380
HpyAV	CCTTC	6 cut(s)	283, 305, 319, 657, 750, 1258
HpyCH4III	ACNGT	1 cut(s)	752
HpyCH4IV	ACGT	1 cut(s)	946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1077, 1151
HpyF3I	CTNAG	5 cut(s)	10, 68, 545, 1036, 1171
HpySE526I	ACGT	1 cut(s)	946
Hsp92II	CATG	6 cut(s)	62, 491, 817, 862, 893, 1111
Kpn2I	TCCGGA	1 cut(s)	976
Ksp22I	TGATCA	2 cut(s)	439, 1177
Kzo9I	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	4 cut(s)	14, 27, 512, 1128
Lsp1109I	GCAGC	5 cut(s)	140, 723, 745, 779, 810
LweI	GCATC	3 cut(s)	341, 406, 946
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	946
MalI	GATC	6 cut(s)	258, 441, 531, 671, 1041, 1179
MboI	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
MfeI	CAATTG	2 cut(s)	465, 694
MflI	RGATCY	2 cut(s)	256, 529
MhlI	GDGCHC	3 cut(s)	11, 509, 703
MlsI	TGGCCA	1 cut(s)	910
MluCI	AATT	5 cut(s)	301, 465, 474, 663, 694
MluNI	TGGCCA	1 cut(s)	910
MlyI	GAGTC	3 cut(s)	144, 458, 575
MmeI	TCCRAC	1 cut(s)	417
Mox20I	TGGCCA	1 cut(s)	910
MroI	TCCGGA	1 cut(s)	976
MroXI	GAANNNNTTC	4 cut(s)	220, 272, 531, 1153
MscI	TGGCCA	1 cut(s)	910
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	910
MspA1I	CMGCKG	2 cut(s)	295, 736
MspI	CCGG	3 cut(s)	673, 977, 1085
MspR9I	CCNGG	1 cut(s)	1085
MunI	CAATTG	2 cut(s)	465, 694
Mva1269I	GAATGC	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	1077, 1151
NciI	CCSGG	1 cut(s)	1085
NdeII	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
NlaIII	CATG	6 cut(s)	62, 491, 817, 862, 893, 1111
NlaIV	GGNNCC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	817
NspV	TTCGAA	1 cut(s)	1049
PceI	AGGCCT	1 cut(s)	709
PciI	ACATGT	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	426
PctI	GAATGC	1 cut(s)	456
PdmI	GAANNNNTTC	4 cut(s)	220, 272, 531, 1153
PfeI	GAWTC	2 cut(s)	1027, 1051
PflMI	CCANNNNNTGG	2 cut(s)	399, 1198
PkrI	GCNGC	5 cut(s)	155, 735, 738, 769, 825
PleI	GAGTC	3 cut(s)	143, 457, 574
PpsI	GAGTC	3 cut(s)	143, 457, 574
PscI	ACATGT	1 cut(s)	813
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	3 cut(s)	52, 64, 114
PstI	CTGCAG	2 cut(s)	501, 769
PsuI	RGATCY	2 cut(s)	256, 529
PvuII	CAGCTG	2 cut(s)	295, 736
RsaI	GTAC	2 cut(s)	1121, 1229
RsaNI	GTAC	2 cut(s)	1120, 1228
RseI	CAYNNNNRTG	1 cut(s)	894
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	5 cut(s)	154, 734, 737, 768, 824
Sau3AI	GATC	6 cut(s)	256, 439, 529, 669, 1039, 1177
Sau96I	GGNCC	3 cut(s)	52, 64, 114
SchI	GAGTC	3 cut(s)	144, 458, 575
ScrFI	CCNGG	1 cut(s)	1085
SduI	GDGCHC	3 cut(s)	11, 509, 703
SfaNI	GCATC	3 cut(s)	341, 406, 946
SfcI	CTRYAG	3 cut(s)	369, 497, 765
SfuI	TTCGAA	1 cut(s)	1049
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	894
Sse9I	AATT	5 cut(s)	301, 465, 474, 663, 694
SseBI	AGGCCT	1 cut(s)	709
SspMI	CTAG	1 cut(s)	572
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	1 cut(s)	1083
TaaI	ACNGT	1 cut(s)	752
TaiI	ACGT	1 cut(s)	949
TaqI	TCGA	3 cut(s)	211, 1049, 1207
TasI	AATT	5 cut(s)	301, 465, 474, 663, 694
TatI	WGTACW	2 cut(s)	1119, 1227
TfiI	GAWTC	2 cut(s)	1027, 1051
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	5 cut(s)	153, 733, 736, 767, 823
TspDTI	ATGAA	3 cut(s)	213, 906, 1146
TspGWI	ACGGA	2 cut(s)	110, 264
TspRI	CASTG	1 cut(s)	645
Van91I	CCANNNNNTGG	2 cut(s)	399, 1198
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	817
XmnI	GAANNNNTTC	4 cut(s)	220, 272, 531, 1153
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.