Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006807

Physical Location & Seq

Genomic Coordinates Reverse (-)

31622097 .. 31624726

Gene Structure 2630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1230900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTGGGCTCAGGAGCAACAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAACCATCTGTCTCAACACTGACTGGACTTACTCTGTTTTCTGGACCATCCGTCCCCGCCCGAGAGTTAGAGGTGGTACTGGCTGCAAGGTTGGGGATGACAATGGTAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTCGAGGAAGAGTTTCATCAGATTGTCTGGAAGAAATTGATAGAGAAGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTCTTCAAAGAACCCACAGAGTGTGAGCCAAACATCTCCAACTACTGGCAAAGTTCATATGATGCTCTTCCTCCTGAGTGGACTGATCAGTTTGAGTCAGGCATTCAGACTATTGCTGTAATTCAAGCTGGTCATGGGCTTCTGCAGTTGGGCTCCTGCAAGATTATACCGGAAGATCTGCATTTTGTGCTAAGAATGAGGCATACATTTGAATCTCTAGGCTACCAGTCTGGTTTCTACCTCTCCCAACTCTTTTCGTCAAACCGAAACAATTCTGGATCATCAGTACTGCCCTCAATGCAGTCCCCGATGCCAATCCGCTCTCCTCCGCCTCTTTTCAATTGGGCTCAAAGGCCTCTTCCATCTGCAGCAACCATGCAGCTTCCTTCACCTAATTTTCAAAACTCTGCTGCTAGACTTGGGTACAATCCTCAAGCCAGTAAAGACGAGACACACATGTTTTTGCTGCCTCATACGTCAGAAACACAGATGGGAGGAGACATGATGGGGGGAGGAGGAGGACGAGGAGGAAGAGAGCATGAAAGTGACATCAAATGGCCTAATGGATTGTCCTTCTTCAATGCACTAACGGGGCGGTCTGATGATGCAAAGCTTTTGTTCAATCCAGGGGGCTCGGAAAACAAAGGCGGGGACGAAAATCACCACCACCAGAACTCGAATGCAAATTCAGATCACAATGAGTTTTTGAGCTTGGACTGCCATCTGGATAGTAGTGCAAGGAAGAACATGGAAAACAAGTACAAGAGGAGCTTTACTTTACCTGCAAGAATGGCTTCGTCGTCTTCGAATTTGGTTGACCACCATCAGCATCAACCTGTCGGGTATCAAAACGCGGAAGCTGGTATGTACTCTGATGTCATGGAGCCATTCTTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

418

Amino Acids

46.44

Weight (kDa)

5.89

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	19 - 76	4.5e-09	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N	PF14215	84 - 188	4.4e-17	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53900 AT5G53900 AT5G53900
fragaria_vesca	FvH4_3g19620 FvH4_3g19620 FvH4_3g19620
malus_domestica	MD03G1230900.v1.1 MD11G1252200.v1.1
prunus_persica	Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1
pyrus_communis	pycom03g17860 pycom11g22370
rosa_chinensis	RchiOBHm_Chr5g0032811
rosa_laevigata	RLG00000033430
rosa_multiflora	Rmu_sc0000986.1_g000046
rosa_roxburghii	Rroxscaffold_1G00047240
rosa_rugosa	Rorug05G0134000 Rorug05G0134100
rosa_samantha	Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500
rosa_wichuraiana	Rw5G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1144
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccBSI	CCGCTC	1 cut(s)	675
AccII	CGCG	1 cut(s)	1208
AciI	CCGC	6 cut(s)	127, 673, 683, 949, 1002, 1208
AclWI	GGATC	2 cut(s)	251, 640
AcsI	RAATTY	2 cut(s)	1039, 1162
AcuI	CTGAAG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	375
AfaI	GTAC	5 cut(s)	148, 642, 779, 1115, 1223
AfiI	CCNNNNNNNGG	3 cut(s)	61, 352, 399
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	7 cut(s)	361, 479, 566, 694, 755, 934, 976
AhdI	GACNNNNNGTC	1 cut(s)	120
AjnI	CCWGG	1 cut(s)	979
AluBI	AGCT	8 cut(s)	38, 180, 482, 736, 967, 1065, 1125, 1214
AluI	AGCT	8 cut(s)	38, 180, 482, 736, 967, 1065, 1125, 1214
Alw26I	GTCTC	3 cut(s)	86, 797, 846
AlwI	GGATC	2 cut(s)	251, 640
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	5 cut(s)	51, 63, 270, 707, 911
ApeKI	GCWGC	5 cut(s)	153, 722, 733, 764, 820
ApoI	RAATTY	2 cut(s)	1039, 1162
Asp700I	GAANNNNTTC	3 cut(s)	220, 625, 1147
AspS9I	GGNCC	3 cut(s)	52, 64, 114
AsuHPI	GGTGA	2 cut(s)	735, 1007
AsuII	TTCGAA	1 cut(s)	1160
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	114
BanII	GRGCYC	4 cut(s)	11, 509, 703, 989
BbsI	GAAGAC	2 cut(s)	349, 1149
BbvI	GCAGC	5 cut(s)	140, 734, 745, 751, 807
BciT130I	CCWGG	1 cut(s)	981
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	3 cut(s)	86, 797, 846
BfaI	CTAG	2 cut(s)	572, 768
BfmI	CTRYAG	2 cut(s)	497, 720
BfuAI	ACCTGC	1 cut(s)	1144
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	5 cut(s)	154, 723, 734, 765, 821
BlsI	GCNGC	5 cut(s)	155, 724, 735, 766, 822
BmcAI	AGTACT	1 cut(s)	642
Bme1390I	CCNGG	1 cut(s)	981
Bme18I	GGWCC	1 cut(s)	114
BmeRI	GACNNNNNGTC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	52, 64, 114
BmiI	GGNNCC	2 cut(s)	508, 1239
BmrFI	CCNGG	1 cut(s)	981
BmsI	GCATC	5 cut(s)	341, 406, 654, 949, 1192
BpiI	GAAGAC	2 cut(s)	349, 1149
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	1160
BpuEI	CTTGAG	1 cut(s)	771
BsaBI	GATNNNNATC	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	980
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 352, 399
Bse1I	ACTGG	5 cut(s)	98, 154, 404, 580, 792
Bse8I	GATNNNNATC	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	1 cut(s)	980
BseGI	GGATG	3 cut(s)	51, 117, 172
BseJI	GATNNNNATC	1 cut(s)	668
BseLI	CCNNNNNNNGG	3 cut(s)	61, 352, 399
BseMII	CTCAG	3 cut(s)	24, 82, 420
BseNI	ACTGG	5 cut(s)	98, 154, 404, 580, 792
BseRI	GAGGAG	6 cut(s)	669, 864, 882, 885, 894, 1135
BseXI	GCAGC	5 cut(s)	140, 734, 745, 751, 807
Bsh1236I	CGCG	1 cut(s)	1208
BshFI	GGCC	5 cut(s)	53, 65, 272, 709, 913
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	3 cut(s)	108, 643, 1019
BslI	CCNNNNNNNGG	3 cut(s)	61, 352, 399
BsmAI	GTCTC	3 cut(s)	86, 797, 846
BsmFI	GGGAC	3 cut(s)	108, 643, 1019
BsmI	GAATGC	2 cut(s)	456, 1039
BsnI	GGCC	5 cut(s)	53, 65, 272, 709, 913
BsoBI	CYCGRG	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	1160
Bsp1286I	GDGCHC	4 cut(s)	11, 509, 703, 989
Bsp143I	GATC	5 cut(s)	256, 439, 529, 632, 1045
BspACI	CCGC	6 cut(s)	127, 673, 683, 949, 1002, 1208
BspANI	GGCC	5 cut(s)	53, 65, 272, 709, 913
BspCNI	CTCAG	3 cut(s)	23, 81, 421
BspFNI	CGCG	1 cut(s)	1208
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	508, 1239
BspMAI	CTGCAG	2 cut(s)	501, 724
BspMI	ACCTGC	1 cut(s)	1144
BspPI	GGATC	2 cut(s)	251, 640
BspQI	GCTCTTC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	1160
BsrBI	CCGCTC	1 cut(s)	675
BsrI	ACTGG	5 cut(s)	98, 154, 404, 580, 792
BssECI	CCNNGG	1 cut(s)	980
BssMI	GATC	5 cut(s)	256, 439, 529, 632, 1045
Bst2UI	CCWGG	1 cut(s)	981
Bst6I	CTCTTC	4 cut(s)	211, 426, 717, 880
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	1160
BstDEI	CTNAG	5 cut(s)	10, 68, 429, 545, 1246
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	51, 117, 172
BstFNI	CGCG	1 cut(s)	1208
BstKTI	GATC	5 cut(s)	259, 442, 532, 635, 1048
BstMAI	GTCTC	3 cut(s)	86, 797, 846
BstMBI	GATC	5 cut(s)	256, 439, 529, 632, 1045
BstMWI	GCNNNNNNNGC	4 cut(s)	541, 652, 1071, 1145
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	979
BstSFI	CTRYAG	2 cut(s)	497, 720
BstUI	CGCG	1 cut(s)	1208
BstV1I	GCAGC	5 cut(s)	140, 734, 745, 751, 807
BstV2I	GAAGAC	2 cut(s)	349, 1149
BstX2I	RGATCY	2 cut(s)	256, 529
BstYI	RGATCY	2 cut(s)	256, 529
BsuRI	GGCC	5 cut(s)	53, 65, 272, 709, 913
BtsCI	GGATG	3 cut(s)	51, 117, 172
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	1144
CciI	TCATGA	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	52, 64, 114
Csp6I	GTAC	5 cut(s)	147, 641, 778, 1114, 1222
CviAII	CATG	8 cut(s)	59, 488, 730, 811, 856, 893, 1102, 1234
CviQI	GTAC	5 cut(s)	147, 641, 778, 1114, 1222
DdeI	CTNAG	5 cut(s)	10, 68, 429, 545, 1246
DpnI	GATC	5 cut(s)	258, 441, 531, 634, 1047
DpnII	GATC	5 cut(s)	256, 439, 529, 632, 1045
DraIII	CACNNNGTG	1 cut(s)	375
DriI	GACNNNNNGTC	1 cut(s)	120
Eam1104I	CTCTTC	4 cut(s)	211, 426, 717, 880
Eam1105I	GACNNNNNGTC	1 cut(s)	120
EarI	CTCTTC	4 cut(s)	211, 426, 717, 880
EciI	GGCGGA	1 cut(s)	672
Eco147I	AGGCCT	2 cut(s)	272, 709
Eco24I	GRGCYC	4 cut(s)	11, 509, 703, 989
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	979
EcoT38I	GRGCYC	4 cut(s)	11, 509, 703, 989
FaeI	CATG	8 cut(s)	62, 491, 733, 814, 859, 896, 1105, 1237
FalI	AAGNNNNNCTT	4 cut(s)	1109, 1141, 1132, 1164
FaqI	GGGAC	3 cut(s)	108, 643, 1019
FatI	CATG	8 cut(s)	58, 487, 729, 810, 855, 892, 1101, 1233
FauI	CCCGC	2 cut(s)	134, 995
FauNDI	CATATG	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	5 cut(s)	154, 723, 734, 765, 821
FokI	GGATG	3 cut(s)	58, 104, 179
FriOI	GRGCYC	4 cut(s)	11, 509, 703, 989
Fsp4HI	GCNGC	5 cut(s)	154, 723, 734, 765, 821
FspBI	CTAG	2 cut(s)	572, 768
GluI	GCNGC	5 cut(s)	154, 723, 734, 765, 821
HaeIII	GGCC	5 cut(s)	53, 65, 272, 709, 913
HapII	CCGG	1 cut(s)	524
Hin1II	CATG	8 cut(s)	62, 491, 733, 814, 859, 896, 1105, 1237
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HindIII	AAGCTT	1 cut(s)	965
HinfI	GANTC	2 cut(s)	449, 566
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	2 cut(s)	735, 1007
Hpy166II	GTNNAC	2 cut(s)	435, 1171
Hpy188III	TCNNGA	7 cut(s)	12, 59, 112, 236, 428, 630, 1079
Hpy8I	GTNNAC	2 cut(s)	435, 1171
Hpy99I	CGWCG	1 cut(s)	1156
HpyAV	CCTTC	6 cut(s)	65, 283, 305, 319, 750, 937
HpyCH4IV	ACGT	1 cut(s)	830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	541, 652, 1071, 1145
HpyF3I	CTNAG	5 cut(s)	10, 68, 429, 545, 1246
HpySE526I	ACGT	1 cut(s)	830
Hsp92II	CATG	8 cut(s)	62, 491, 733, 814, 859, 896, 1105, 1237
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	256, 439, 529, 632, 1045
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	5 cut(s)	14, 27, 512, 1122, 1237
Lsp1109I	GCAGC	5 cut(s)	140, 734, 745, 751, 807
LweI	GCATC	5 cut(s)	341, 406, 654, 949, 1192
MaeI	CTAG	2 cut(s)	572, 768
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	1 cut(s)	899
MalI	GATC	5 cut(s)	258, 441, 531, 634, 1047
MbiI	CCGCTC	1 cut(s)	675
MboI	GATC	5 cut(s)	256, 439, 529, 632, 1045
MfeI	CAATTG	1 cut(s)	694
MflI	RGATCY	2 cut(s)	256, 529
MhlI	GDGCHC	4 cut(s)	11, 509, 703, 989
MluCI	AATT	8 cut(s)	243, 301, 474, 625, 694, 748, 1039, 1162
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	417
MroXI	GAANNNNTTC	3 cut(s)	220, 625, 1147
MslI	CAYNNNNRTG	1 cut(s)	897
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	981
MunI	CAATTG	1 cut(s)	694
Mva1269I	GAATGC	2 cut(s)	456, 1039
MvaI	CCWGG	1 cut(s)	981
MvnI	CGCG	1 cut(s)	1208
MwoI	GCNNNNNNNGC	4 cut(s)	541, 652, 1071, 1145
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	5 cut(s)	256, 439, 529, 632, 1045
NlaIII	CATG	8 cut(s)	62, 491, 733, 814, 859, 896, 1105, 1237
NlaIV	GGNNCC	2 cut(s)	508, 1239
NmuCI	GTSAC	1 cut(s)	899
NspI	RCATGY	1 cut(s)	814
NspV	TTCGAA	1 cut(s)	1160
PagI	TCATGA	1 cut(s)	58
PceI	AGGCCT	2 cut(s)	272, 709
PciI	ACATGT	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	1157
PctI	GAATGC	2 cut(s)	456, 1039
PdmI	GAANNNNTTC	3 cut(s)	220, 625, 1147
PfeI	GAWTC	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	399
PkrI	GCNGC	5 cut(s)	155, 724, 735, 766, 822
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PscI	ACATGT	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	2 cut(s)	508, 1239
PspPI	GGNCC	3 cut(s)	52, 64, 114
PstI	CTGCAG	2 cut(s)	501, 724
PsuI	RGATCY	2 cut(s)	256, 529
RsaI	GTAC	5 cut(s)	148, 642, 779, 1115, 1223
RsaNI	GTAC	5 cut(s)	147, 641, 778, 1114, 1222
RseI	CAYNNNNRTG	1 cut(s)	897
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	5 cut(s)	154, 723, 734, 765, 821
Sau3AI	GATC	5 cut(s)	256, 439, 529, 632, 1045
Sau96I	GGNCC	3 cut(s)	52, 64, 114
ScaI	AGTACT	1 cut(s)	642
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	981
SduI	GDGCHC	4 cut(s)	11, 509, 703, 989
SfaNI	GCATC	5 cut(s)	341, 406, 654, 949, 1192
SfcI	CTRYAG	2 cut(s)	497, 720
SfuI	TTCGAA	1 cut(s)	1160
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	897
SmlI	CTYRAG	1 cut(s)	786
SmoI	CTYRAG	1 cut(s)	786
Sse9I	AATT	8 cut(s)	243, 301, 474, 625, 694, 748, 1039, 1162
SseBI	AGGCCT	2 cut(s)	272, 709
SsiI	CCGC	6 cut(s)	127, 673, 683, 949, 1002, 1208
SspMI	CTAG	2 cut(s)	572, 768
StuI	AGGCCT	2 cut(s)	272, 709
StyD4I	CCNGG	1 cut(s)	979
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	3 cut(s)	211, 1031, 1160
TasI	AATT	8 cut(s)	243, 301, 474, 625, 694, 748, 1039, 1162
TatI	WGTACW	3 cut(s)	640, 1113, 1221
TfiI	GAWTC	1 cut(s)	566
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	899
TseI	GCWGC	5 cut(s)	153, 722, 733, 764, 820
Tsp45I	GTSAC	1 cut(s)	899
TspDTI	ATGAA	4 cut(s)	47, 213, 399, 909
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	2 cut(s)	1039, 1162
XceI	RCATGY	1 cut(s)	814
XmnI	GAANNNNTTC	3 cut(s)	220, 625, 1147
XspI	CTAG	2 cut(s)	572, 768
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.