Rh5CG255600
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006807
Physical Location & Seq
Forward (+)
27095746 .. 27098764
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG255600.1

Sequence Viewer

Length: 1254 bp
ATGTTTCTTTTATCCTTCTCCCTCTCTCTGCCCTTTGATCTTTGTCTTGAGCTTTGGAGACTTCGATTTTGTTGCTGTTTTTCTAGTTTTCTTTTTTGGGTCTATGTTGATTGGTTTGATTCTTGGTGCAGGAGAGTCAGGGGTGGTAATGGCTGCAAGGTTGGGGATGATAATGGTAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGAGTTGCAGATTGTCTTCCAGACATTGATGGAGAAGATCCTGTCAGAAAATCCTTCAGCAAAATGTCCATTCAACTATATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTCTTCAAAGAACCAACAGAGTGCGAACCAAACATCTCCAACTACTGGCAAAGTTCATTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTCGAGTCAGGAATACAGACAATTGCTGTAATTCAAGCTGGCCATGGACTTCTGCAATTGGGTTCCTGCAAAATTATACCTGAAGACCTTCATTTTGTGCTAAGAATGAGGCACACCTTTGAATCTCTAGGCTACCAATCTGGTTTCTACCTATCTCAGCTTTTTGCTTCAAACAGAAACAATTCAAATTCCTCTGTTCCAGTACTTCCTTCGAAGCAATCCCCCATTCCAATTCGACCTCCTCCTCCTTTGTTCAATTGGGCTCAAAGGCCACTCCCACCTGCAACATCTATGCAGCTGCCTTCACCCAATTTTCAAAACTCCGCTGCAGCCAGACTAGGGTATCCTCACCAACCCAACAAAGACGAAAGTACCCATATGTTTTTGCTGCCTCATTCGGCCGAAACCCAAATGGGAGATCACCACATGATGGGAGGAGGAGAACAGCATGAAAATGACATCAAGTGGCCAAATGGGCTGTCTTTCTTCAGTGCCCTCACTGGACGAAGTGAGGATGCAAAGCTTTTGTTCAACCCGGAGAACTTAGGAAACAAAGCAGCAGAGGAAGATCCGAATTCAGATGCTTCCAACAATCCCAATCACGAGTTCTTGAGCTTGGATTGCCATCCGGATAGTAGTAATGCAAGGAAGATGAACATGGAAAATAAGTACAAGAGGAGCTTCACTTTGCCTGCAAGAATGACCTCATCATCTTCAACTTCAGTTGATCATCACCACCAGCACCAGAACGTGTACAATCGGAATTCTGAAGCCGGTATGTACTCTGATGTCATGGAGACCTTCTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

417

Amino Acids

47.3

Weight (kDa)

5.65

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 88 - 187 8.5e-17 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 730
Acc36I ACCTGC 1 cut(s) 730
AccB7I CCANNNNNTGG 2 cut(s) 396, 871
AccIII TCCGGA 1 cut(s) 1069
AciI CCGC 1 cut(s) 765
AclWI GGATC 2 cut(s) 248, 1004
AcoI YGGCCR 3 cut(s) 481, 840, 908
AcsI RAATTY 3 cut(s) 628, 1015, 1204
AcuI CTGAAG 5 cut(s) 256, 543, 913, 1146, 1230
AfaI GTAC 5 cut(s) 645, 814, 1112, 1196, 1223
AfiI CCNNNNNNNGG 4 cut(s) 349, 396, 780, 871
AflIII ACRYGT 1 cut(s) 1191
AjuI GAANNNNNNNTTGG 2 cut(s) 1031, 1063
AluBI AGCT 8 cut(s) 52, 180, 479, 601, 739, 964, 1056, 1122
AluI AGCT 8 cut(s) 52, 180, 479, 601, 739, 964, 1056, 1122
Alw26I GTCTC 2 cut(s) 52, 1232
AlwI GGATC 2 cut(s) 248, 1004
Aor13HI TCCGGA 1 cut(s) 1069
AoxI GGCC 4 cut(s) 481, 710, 840, 908
ApeKI GCWGC 7 cut(s) 153, 736, 739, 767, 770, 829, 998
ApoI RAATTY 3 cut(s) 628, 1015, 1204
ArsI GACNNNNNNTTYG 6 cut(s) 51, 83, 518, 550, 905, 937
Asp700I GAANNNNTTC 2 cut(s) 528, 622
AsuC2I CCSGG 1 cut(s) 977
AsuHPI GGTGA 4 cut(s) 738, 782, 854, 1166
AsuII TTCGAA 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 937
BaeI ACNNNNGTAYC 4 cut(s) 767, 796, 800, 829
BalI TGGCCA 2 cut(s) 483, 910
BanII GRGCYC 1 cut(s) 706
BauI CACGAG 1 cut(s) 1043
BbsI GAAGAC 3 cut(s) 224, 346, 531
BbvI GCAGC 7 cut(s) 140, 726, 748, 754, 782, 816, 1010
BccI CCATC 5 cut(s) 194, 239, 310, 865, 1074
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciVI GTATCC 1 cut(s) 795
BclI TGATCA 2 cut(s) 436, 1168
BcnI CCSGG 1 cut(s) 977
BcoDI GTCTC 2 cut(s) 52, 1232
BfaI CTAG 3 cut(s) 84, 569, 779
BfmI CTRYAG 1 cut(s) 768
BfuAI ACCTGC 1 cut(s) 730
BfuI GTATCC 1 cut(s) 795
BglI GCCNNNNNGGC 1 cut(s) 916
BisI GCNGC 7 cut(s) 154, 737, 740, 768, 771, 830, 999
BlsI GCNGC 7 cut(s) 155, 738, 741, 769, 772, 831, 1000
BmcAI AGTACT 1 cut(s) 645
Bme1390I CCNGG 1 cut(s) 977
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 1 cut(s) 977
BmsI GCATC 4 cut(s) 338, 403, 946, 1012
BpiI GAAGAC 3 cut(s) 224, 346, 531
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 68, 1072
BpuMI CCSGG 1 cut(s) 977
BsaBI GATNNNNATC 1 cut(s) 1065
BsaI GGTCTC 1 cut(s) 1232
BsaJI CCNNGG 2 cut(s) 211, 484
BsaWI WCCGGW 1 cut(s) 1069
Bsc4I CCNNNNNNNGG 4 cut(s) 349, 396, 780, 871
Bse118I RCCGGY 1 cut(s) 1214
Bse1I ACTGG 3 cut(s) 401, 641, 946
Bse8I GATNNNNATC 1 cut(s) 1065
BseAI TCCGGA 1 cut(s) 1069
BseDI CCNNGG 2 cut(s) 211, 484
BseGI GGATG 3 cut(s) 172, 961, 1066
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 4 cut(s) 349, 396, 780, 871
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 3 cut(s) 401, 641, 946
BseRI GAGGAG 5 cut(s) 672, 675, 891, 894, 1132
BseSI GKGCMC 1 cut(s) 937
BseX3I CGGCCG 1 cut(s) 840
BseXI GCAGC 7 cut(s) 140, 726, 748, 754, 782, 816, 1010
BsgI GTGCAG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 843
BshFI GGCC 4 cut(s) 483, 712, 842, 910
BsiEI CGRYCG 1 cut(s) 843
BsiSI CCGG 3 cut(s) 977, 1070, 1215
BslI CCNNNNNNNGG 4 cut(s) 349, 396, 780, 871
BsmAI GTCTC 2 cut(s) 52, 1232
BsnI GGCC 4 cut(s) 483, 712, 842, 910
Bso31I GGTCTC 1 cut(s) 1232
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 706, 937
Bsp13I TCCGGA 1 cut(s) 1069
Bsp1407I TGTACA 1 cut(s) 1194
Bsp143I GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 1 cut(s) 765
BspANI GGCC 4 cut(s) 483, 712, 842, 910
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 1 cut(s) 1069
BspLI GGNNCC 1 cut(s) 505
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 2 cut(s) 248, 1004
BspQI GCTCTTC 1 cut(s) 423
BspT104I TTCGAA 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 1232
BsrFI RCCGGY 1 cut(s) 1214
BsrGI TGTACA 1 cut(s) 1194
BsrI ACTGG 3 cut(s) 401, 641, 946
BssAI RCCGGY 1 cut(s) 1214
BssECI CCNNGG 2 cut(s) 211, 484
BssMI GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
BssSI CACGAG 1 cut(s) 1043
BssT1I CCWWGG 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 1043
Bst6I CTCTTC 2 cut(s) 211, 423
BstAUI TGTACA 1 cut(s) 1194
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 481, 1134
BstDEI CTNAG 4 cut(s) 542, 597, 985, 1246
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 3 cut(s) 172, 961, 1066
BstKTI GATC 6 cut(s) 40, 256, 439, 862, 1012, 1171
BstMAI GTCTC 2 cut(s) 52, 1232
BstMBI GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
BstMCI CGRYCG 1 cut(s) 843
BstMWI GCNNNNNNNGC 2 cut(s) 916, 1062
BstSCI CCNGG 1 cut(s) 975
BstSFI CTRYAG 1 cut(s) 768
BstSLI GKGCMC 1 cut(s) 937
BstV1I GCAGC 7 cut(s) 140, 726, 748, 754, 782, 816, 1010
BstV2I GAAGAC 3 cut(s) 224, 346, 531
BstX2I RGATCY 2 cut(s) 253, 1009
BstYI RGATCY 2 cut(s) 253, 1009
BstZI CGGCCG 1 cut(s) 840
BsuI GTATCC 1 cut(s) 795
BsuRI GGCC 4 cut(s) 483, 712, 842, 910
BtgI CCRYGG 1 cut(s) 484
BtsCI GGATG 3 cut(s) 172, 961, 1066
BtsIMutI CAGTG 2 cut(s) 937, 939
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 2 cut(s) 481, 1134
Cfr10I RCCGGY 1 cut(s) 1214
Csp6I GTAC 5 cut(s) 644, 813, 1111, 1195, 1222
CviAII CATG 5 cut(s) 485, 868, 890, 1099, 1234
CviQI GTAC 5 cut(s) 644, 813, 1111, 1195, 1222
DdeI CTNAG 4 cut(s) 542, 597, 985, 1246
DpnI GATC 6 cut(s) 39, 255, 438, 861, 1011, 1170
DpnII GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
EaeI YGGCCR 3 cut(s) 481, 840, 908
EagI CGGCCG 1 cut(s) 840
Eam1104I CTCTTC 2 cut(s) 211, 423
EarI CTCTTC 2 cut(s) 211, 423
EclXI CGGCCG 1 cut(s) 840
Eco130I CCWWGG 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 706
Eco31I GGTCTC 1 cut(s) 1232
Eco52I CGGCCG 1 cut(s) 840
Eco57I CTGAAG 5 cut(s) 256, 543, 913, 1146, 1230
EcoRI GAATTC 2 cut(s) 1015, 1204
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 5 cut(s) 488, 871, 893, 1102, 1237
FalI AAGNNNNNCTT 2 cut(s) 1106, 1138
FatI CATG 5 cut(s) 484, 867, 889, 1098, 1233
FauNDI CATATG 1 cut(s) 819
FbaI TGATCA 2 cut(s) 436, 1168
Fnu4HI GCNGC 7 cut(s) 154, 737, 740, 768, 771, 830, 999
FokI GGATG 3 cut(s) 179, 968, 1053
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 7 cut(s) 154, 737, 740, 768, 771, 830, 999
FspBI CTAG 3 cut(s) 84, 569, 779
GluI GCNGC 7 cut(s) 154, 737, 740, 768, 771, 830, 999
HaeIII GGCC 4 cut(s) 483, 712, 842, 910
HapII CCGG 3 cut(s) 977, 1070, 1215
Hin1II CATG 5 cut(s) 488, 871, 893, 1102, 1237
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 4 cut(s) 119, 135, 446, 563
HpaII CCGG 3 cut(s) 977, 1070, 1215
HphI GGTGA 4 cut(s) 738, 782, 854, 1166
Hpy166II GTNNAC 1 cut(s) 1195
Hpy188I TCNGA 7 cut(s) 263, 334, 1014, 1021, 1203, 1210, 1228
Hpy188III TCNNGA 7 cut(s) 47, 236, 425, 450, 1043, 1051, 1070
Hpy8I GTNNAC 1 cut(s) 1195
HpyAV CCTTC 8 cut(s) 25, 280, 302, 316, 539, 660, 753, 1252
HpyCH4IV ACGT 1 cut(s) 1191
HpyF10VI GCNNNNNNNGC 2 cut(s) 916, 1062
HpyF3I CTNAG 4 cut(s) 542, 597, 985, 1246
HpySE526I ACGT 1 cut(s) 1191
Hsp92II CATG 5 cut(s) 488, 871, 893, 1102, 1237
Kpn2I TCCGGA 1 cut(s) 1069
Ksp22I TGATCA 2 cut(s) 436, 1168
Kzo9I GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 1119
Lsp1109I GCAGC 7 cut(s) 140, 726, 748, 754, 782, 816, 1010
LweI GCATC 4 cut(s) 338, 403, 946, 1012
MaeI CTAG 3 cut(s) 84, 569, 779
MaeII ACGT 1 cut(s) 1191
MalI GATC 6 cut(s) 39, 255, 438, 861, 1011, 1170
MboI GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
MfeI CAATTG 3 cut(s) 462, 497, 697
MflI RGATCY 2 cut(s) 253, 1009
MhlI GDGCHC 2 cut(s) 706, 937
MlsI TGGCCA 2 cut(s) 483, 910
MluNI TGGCCA 2 cut(s) 483, 910
MlyI GAGTC 2 cut(s) 144, 455
MmeI TCCRAC 2 cut(s) 414, 1053
Mox20I TGGCCA 2 cut(s) 483, 910
MroI TCCGGA 1 cut(s) 1069
MroXI GAANNNNTTC 2 cut(s) 528, 622
MscI TGGCCA 2 cut(s) 483, 910
MslI CAYNNNNRTG 1 cut(s) 894
Msp20I TGGCCA 2 cut(s) 483, 910
MspA1I CMGCKG 2 cut(s) 739, 767
MspI CCGG 3 cut(s) 977, 1070, 1215
MspR9I CCNGG 1 cut(s) 977
MunI CAATTG 3 cut(s) 462, 497, 697
MwoI GCNNNNNNNGC 2 cut(s) 916, 1062
NciI CCSGG 1 cut(s) 977
NcoI CCATGG 1 cut(s) 484
NdeI CATATG 1 cut(s) 819
NdeII GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
NlaIII CATG 5 cut(s) 488, 871, 893, 1102, 1237
NlaIV GGNNCC 1 cut(s) 505
NmeAIII GCCGAG 1 cut(s) 236
NspV TTCGAA 1 cut(s) 653
PaqCI CACCTGC 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 423
PdmI GAANNNNTTC 2 cut(s) 528, 622
PfeI GAWTC 2 cut(s) 119, 563
PflMI CCANNNNNTGG 2 cut(s) 396, 871
PkrI GCNGC 7 cut(s) 155, 738, 741, 769, 772, 831, 1000
PleI GAGTC 2 cut(s) 143, 454
PpsI GAGTC 2 cut(s) 143, 454
PspN4I GGNNCC 1 cut(s) 505
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 2 cut(s) 253, 1009
PvuII CAGCTG 1 cut(s) 739
RsaI GTAC 5 cut(s) 645, 814, 1112, 1196, 1223
RsaNI GTAC 5 cut(s) 644, 813, 1111, 1195, 1222
RseI CAYNNNNRTG 1 cut(s) 894
SapI GCTCTTC 1 cut(s) 423
SatI GCNGC 7 cut(s) 154, 737, 740, 768, 771, 830, 999
Sau3AI GATC 6 cut(s) 37, 253, 436, 859, 1009, 1168
ScaI AGTACT 1 cut(s) 645
SchI GAGTC 2 cut(s) 144, 455
ScrFI CCNGG 1 cut(s) 977
SduI GDGCHC 2 cut(s) 706, 937
SfaNI GCATC 4 cut(s) 338, 403, 946, 1012
SfcI CTRYAG 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 2 cut(s) 47, 1051
SmoI CTYRAG 2 cut(s) 47, 1051
SsiI CCGC 1 cut(s) 765
SspMI CTAG 3 cut(s) 84, 569, 779
StyD4I CCNGG 1 cut(s) 975
StyI CCWWGG 1 cut(s) 484
TaiI ACGT 1 cut(s) 1194
TaqI TCGA 4 cut(s) 64, 444, 653, 676
TatI WGTACW 4 cut(s) 643, 1110, 1194, 1221
TfiI GAWTC 2 cut(s) 119, 563
TscAI CASTG 2 cut(s) 937, 946
TseI GCWGC 7 cut(s) 153, 736, 739, 767, 770, 829, 998
TspDTI ATGAA 4 cut(s) 396, 521, 906, 1109
TspRI CASTG 2 cut(s) 937, 946
Van91I CCANNNNNTGG 2 cut(s) 396, 871
XapI RAATTY 3 cut(s) 628, 1015, 1204
XmnI GAANNNNTTC 2 cut(s) 528, 622
XspI CTAG 3 cut(s) 84, 569, 779
ZrmI AGTACT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.