Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006807

Physical Location & Seq

Genomic Coordinates Reverse (-)

18922987 .. 18925638

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17860.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGCACCCCTCCCTCCCTCACTTTTCCCCCAGTGTTTCTCCGGTGCCTAAATACTTGCAACTCCCAGAACCCCACACTTTTTACTCCCTCCCCTCAAAGGGTGTAGAGAAGATTATGGTGGGCTCAGGAGCAACAGATAGGGGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAACCATCTGTCTCAACACCGACTGGACTTACTCTGTTGTCTGGACCATCCGTCCCCGCCCGAGAGTTAGAGGTGGTACTGGCTGCAAGGTTGGGGATGACAATGGTAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTCGAGGAAAAGTTTCATCAGATTGTCTGGAAGAAATTGATAGAGAAGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTCTTCAAAGAACCCACAGAGTGTGAGCCAAACATCTCCAACTATTGGCAAAGTTCATATGATGCTCTTCCTCCTGAATGGACTGATCAGTTTGAGTCAGGCATTCAGACTATTGCTGTAATTCAAGCTGGTCATGGGCTTCTGCAGTTGGGCTCCTGCAAGATTATACCGGAAGACCTGCATTTTGTGCTAAGAATGAGGCATACATTTGAATCTCTAGGCTACCAGTCTGGTTTCTACCTCTCCCAACTCTTTTCGTCAAACCGAAACAATTCTGGATCATCAGTACTGCCCTCAATGCAGTCCCCGATGCCAATCCGCCCTCCTCCGCCTCTTTTCAGTTGGGCTCAAAGGCCTCTTCCATCTGCTGCAGCAACCATGCAGCTTCCTTCACCCAATTTTCAAAACTCTGCTGATAGACTTGGGTACAATCCTCAAGCTGGTAAAGACGAGACACACATGTTTTTGCTGCCTCATACGTCAGAAACACAGATGGGAGGAGACATGATGGGGGGAGGAGGAGGACGAGGAGGAGGAGAGCAGGAAAGTGACATCAAATGGCCTAATGGATTGTCCTTCTTCAATGCACTAACGGGGCGGTCTGATGATGCAAAGCTTTTGTTCAATCCAGAGAGCTCGGAAAACAAAGGTGGGGACGAAAATCACCACCACCAGAACTCGAATGCAAATTCAGATCACAATGAGTTTTTGAGCTTGGACTGCCATCTGGATGGTAGCGCAAGGAAGAACATGGAAAACAAGTACAAGAGGAGCTTTACTTTACCTGCAAGAATGGCTTCGTCGTCTTCGAATTCGGTTGACCACCATCAGCACCAGCCTGTCGGGTATCGAAACGCGGAAGCTGGTATGTACTCTGATGTCATGGAGACATTCTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

457

Amino Acids

50.63

Weight (kDa)

5.91

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53900 AT5G53900 AT5G53900
fragaria_vesca	FvH4_3g19620 FvH4_3g19620 FvH4_3g19620
malus_domestica	MD03G1230900.v1.1 MD11G1252200.v1.1
prunus_persica	Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1
pyrus_communis	pycom03g17860 pycom11g22370
rosa_chinensis	RchiOBHm_Chr5g0032811
rosa_laevigata	RLG00000033430
rosa_multiflora	Rmu_sc0000986.1_g000046
rosa_roxburghii	Rroxscaffold_1G00047240
rosa_rugosa	Rorug05G0134000 Rorug05G0134100
rosa_samantha	Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500
rosa_wichuraiana	Rw5G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	654, 1261
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	513
AccII	CGCG	1 cut(s)	1325
AciI	CCGC	5 cut(s)	241, 787, 797, 1066, 1325
AclWI	GGATC	2 cut(s)	365, 754
AcsI	RAATTY	2 cut(s)	1156, 1279
AcuI	CTGAAG	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	489
AfaI	GTAC	5 cut(s)	262, 756, 896, 1232, 1340
AfiI	CCNNNNNNNGG	6 cut(s)	97, 98, 175, 466, 513, 908
AflIII	ACRYGT	1 cut(s)	927
AgsI	TTSAA	6 cut(s)	475, 593, 680, 872, 1051, 1093
AhdI	GACNNNNNGTC	1 cut(s)	234
Alw21I	GWGCWC	1 cut(s)	1106
Alw26I	GTCTC	4 cut(s)	200, 914, 963, 1349
AlwI	GGATC	2 cut(s)	365, 754
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	5 cut(s)	165, 177, 384, 821, 1028
ApeKI	GCWGC	5 cut(s)	267, 836, 839, 850, 937
ApoI	RAATTY	2 cut(s)	1156, 1279
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
Asp700I	GAANNNNTTC	3 cut(s)	334, 739, 1264
AspLEI	GCGC	1 cut(s)	1208
AspS9I	GGNCC	3 cut(s)	166, 178, 228
AsuHPI	GGTGA	2 cut(s)	852, 1124
AsuII	TTCGAA	1 cut(s)	1277
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	4 cut(s)	125, 623, 817, 1106
BbsI	GAAGAC	3 cut(s)	463, 648, 1266
Bbv12I	GWGCWC	1 cut(s)	1106
BbvI	GCAGC	5 cut(s)	254, 823, 851, 862, 924
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	4 cut(s)	200, 914, 963, 1349
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	2 cut(s)	611, 837
BfuAI	ACCTGC	2 cut(s)	654, 1261
BisI	GCNGC	5 cut(s)	268, 837, 840, 851, 938
BlsI	GCNGC	5 cut(s)	269, 838, 841, 852, 939
BmcAI	AGTACT	1 cut(s)	756
Bme18I	GGWCC	1 cut(s)	228
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	166, 178, 228
BmiI	GGNNCC	2 cut(s)	45, 622
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	4 cut(s)	455, 520, 768, 1066
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	3 cut(s)	463, 648, 1266
Bpu10I	CCTNAGC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	1277
BpuEI	CTTGAG	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	782
BsaWI	WCCGGW	2 cut(s)	40, 637
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 98, 175, 466, 513, 908
Bse1I	ACTGG	4 cut(s)	30, 212, 268, 694
Bse8I	GATNNNNATC	1 cut(s)	782
BseGI	GGATG	4 cut(s)	165, 231, 286, 1204
BseJI	GATNNNNATC	1 cut(s)	782
BseLI	CCNNNNNNNGG	6 cut(s)	97, 98, 175, 466, 513, 908
BseMII	CTCAG	2 cut(s)	138, 196
BseNI	ACTGG	4 cut(s)	30, 212, 268, 694
BseRI	GAGGAG	8 cut(s)	783, 981, 999, 1002, 1011, 1014, 1017, 1252
BseXI	GCAGC	5 cut(s)	254, 823, 851, 862, 924
Bsh1236I	CGCG	1 cut(s)	1325
BshFI	GGCC	5 cut(s)	167, 179, 386, 823, 1030
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	1106
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	41, 638
BslFI	GGGAC	3 cut(s)	222, 757, 1136
BslI	CCNNNNNNNGG	6 cut(s)	97, 98, 175, 466, 513, 908
BsmAI	GTCTC	4 cut(s)	200, 914, 963, 1349
BsmFI	GGGAC	3 cut(s)	222, 757, 1136
BsmI	GAATGC	2 cut(s)	570, 1156
BsnI	GGCC	5 cut(s)	167, 179, 386, 823, 1030
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	1277
Bsp1286I	GDGCHC	4 cut(s)	125, 623, 817, 1106
Bsp143I	GATC	4 cut(s)	370, 553, 746, 1162
BspACI	CCGC	5 cut(s)	241, 787, 797, 1066, 1325
BspANI	GGCC	5 cut(s)	167, 179, 386, 823, 1030
BspCNI	CTCAG	2 cut(s)	137, 195
BspFNI	CGCG	1 cut(s)	1325
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	45, 622
BspMAI	CTGCAG	2 cut(s)	615, 841
BspMI	ACCTGC	2 cut(s)	654, 1261
BspPI	GGATC	2 cut(s)	365, 754
BspQI	GCTCTTC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	1277
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	4 cut(s)	30, 212, 268, 694
BssMI	GATC	4 cut(s)	370, 553, 746, 1162
Bst6I	CTCTTC	2 cut(s)	540, 831
BstAPI	GCANNNNNTGC	1 cut(s)	655
BstBI	TTCGAA	1 cut(s)	1277
BstDEI	CTNAG	3 cut(s)	124, 182, 659
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	4 cut(s)	165, 231, 286, 1204
BstFNI	CGCG	1 cut(s)	1325
BstHHI	GCGC	1 cut(s)	1208
BstKTI	GATC	4 cut(s)	373, 556, 749, 1165
BstMAI	GTCTC	4 cut(s)	200, 914, 963, 1349
BstMBI	GATC	4 cut(s)	370, 553, 746, 1162
BstMWI	GCNNNNNNNGC	4 cut(s)	655, 766, 1188, 1262
BstNSI	RCATGY	1 cut(s)	931
BstSFI	CTRYAG	2 cut(s)	611, 837
BstUI	CGCG	1 cut(s)	1325
BstV1I	GCAGC	5 cut(s)	254, 823, 851, 862, 924
BstV2I	GAAGAC	3 cut(s)	463, 648, 1266
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	1199
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	5 cut(s)	167, 179, 386, 823, 1030
BtsCI	GGATG	4 cut(s)	165, 231, 286, 1204
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	2 cut(s)	654, 1261
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	1208
Cfr13I	GGNCC	3 cut(s)	166, 178, 228
Csp6I	GTAC	5 cut(s)	261, 755, 895, 1231, 1339
CviAII	CATG	7 cut(s)	173, 602, 847, 928, 973, 1219, 1351
CviQI	GTAC	5 cut(s)	261, 755, 895, 1231, 1339
DdeI	CTNAG	3 cut(s)	124, 182, 659
DpnI	GATC	4 cut(s)	372, 555, 748, 1164
DpnII	GATC	4 cut(s)	370, 553, 746, 1162
DraIII	CACNNNGTG	1 cut(s)	489
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	540, 831
Eam1105I	GACNNNNNGTC	1 cut(s)	234
EarI	CTCTTC	2 cut(s)	540, 831
EciI	GGCGGA	2 cut(s)	776, 786
Ecl136II	GAGCTC	1 cut(s)	1104
Eco147I	AGGCCT	2 cut(s)	386, 823
Eco24I	GRGCYC	4 cut(s)	125, 623, 817, 1106
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	1104
Eco57I	CTGAAG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	1104
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	1279
EcoT38I	GRGCYC	4 cut(s)	125, 623, 817, 1106
FaeI	CATG	7 cut(s)	176, 605, 850, 931, 976, 1222, 1354
FalI	AAGNNNNNCTT	4 cut(s)	1226, 1258, 1249, 1281
FaqI	GGGAC	3 cut(s)	222, 757, 1136
FatI	CATG	7 cut(s)	172, 601, 846, 927, 972, 1218, 1350
FauI	CCCGC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	268, 837, 840, 851, 938
FokI	GGATG	4 cut(s)	172, 218, 293, 1211
FriOI	GRGCYC	4 cut(s)	125, 623, 817, 1106
Fsp4HI	GCNGC	5 cut(s)	268, 837, 840, 851, 938
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	1 cut(s)	1207
GluI	GCNGC	5 cut(s)	268, 837, 840, 851, 938
HaeIII	GGCC	5 cut(s)	167, 179, 386, 823, 1030
HapII	CCGG	2 cut(s)	41, 638
HhaI	GCGC	1 cut(s)	1208
Hin1II	CATG	7 cut(s)	176, 605, 850, 931, 976, 1222, 1354
Hin6I	GCGC	1 cut(s)	1206
HinP1I	GCGC	1 cut(s)	1206
HincII	GTYRAC	1 cut(s)	1288
HindII	GTYRAC	1 cut(s)	1288
HindIII	AAGCTT	1 cut(s)	1082
HinfI	GANTC	2 cut(s)	563, 680
HpaII	CCGG	2 cut(s)	41, 638
HphI	GGTGA	2 cut(s)	852, 1124
Hpy166II	GTNNAC	1 cut(s)	1288
Hpy188III	TCNNGA	8 cut(s)	126, 173, 226, 350, 542, 744, 1097, 1196
Hpy8I	GTNNAC	1 cut(s)	1288
Hpy99I	CGWCG	1 cut(s)	1273
HpyAV	CCTTC	6 cut(s)	179, 397, 419, 433, 867, 1054
HpyCH4IV	ACGT	1 cut(s)	947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	655, 766, 1188, 1262
HpyF3I	CTNAG	3 cut(s)	124, 182, 659
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	7 cut(s)	176, 605, 850, 931, 976, 1222, 1354
HspAI	GCGC	1 cut(s)	1206
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	370, 553, 746, 1162
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	3 cut(s)	128, 626, 1239
Lsp1109I	GCAGC	5 cut(s)	254, 823, 851, 862, 924
LweI	GCATC	4 cut(s)	455, 520, 768, 1066
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	4 cut(s)	372, 555, 748, 1164
MboI	GATC	4 cut(s)	370, 553, 746, 1162
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	4 cut(s)	125, 623, 817, 1106
MluCI	AATT	7 cut(s)	357, 415, 588, 739, 865, 1156, 1279
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	531
MroXI	GAANNNNTTC	3 cut(s)	334, 739, 1264
MslI	CAYNNNNRTG	1 cut(s)	1197
MspI	CCGG	2 cut(s)	41, 638
Mva1269I	GAATGC	2 cut(s)	570, 1156
MvnI	CGCG	1 cut(s)	1325
MwoI	GCNNNNNNNGC	4 cut(s)	655, 766, 1188, 1262
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	4 cut(s)	370, 553, 746, 1162
NlaIII	CATG	7 cut(s)	176, 605, 850, 931, 976, 1222, 1354
NlaIV	GGNNCC	2 cut(s)	45, 622
NmuCI	GTSAC	1 cut(s)	1016
NspI	RCATGY	1 cut(s)	931
NspV	TTCGAA	1 cut(s)	1277
PagI	TCATGA	1 cut(s)	172
PceI	AGGCCT	2 cut(s)	386, 823
PciI	ACATGT	1 cut(s)	927
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	1274
PctI	GAATGC	2 cut(s)	570, 1156
PdmI	GAANNNNTTC	3 cut(s)	334, 739, 1264
PfeI	GAWTC	1 cut(s)	680
PflMI	CCANNNNNTGG	1 cut(s)	513
PkrI	GCNGC	5 cut(s)	269, 838, 841, 852, 939
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	1106
PspN4I	GGNNCC	2 cut(s)	45, 622
PspPI	GGNCC	3 cut(s)	166, 178, 228
PstI	CTGCAG	2 cut(s)	615, 841
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	5 cut(s)	262, 756, 896, 1232, 1340
RsaNI	GTAC	5 cut(s)	261, 755, 895, 1231, 1339
RseI	CAYNNNNRTG	1 cut(s)	1197
SacI	GAGCTC	1 cut(s)	1106
SapI	GCTCTTC	1 cut(s)	540
SatI	GCNGC	5 cut(s)	268, 837, 840, 851, 938
Sau3AI	GATC	4 cut(s)	370, 553, 746, 1162
Sau96I	GGNCC	3 cut(s)	166, 178, 228
ScaI	AGTACT	1 cut(s)	756
SchI	GAGTC	1 cut(s)	572
SduI	GDGCHC	4 cut(s)	125, 623, 817, 1106
SfaNI	GCATC	4 cut(s)	455, 520, 768, 1066
SfcI	CTRYAG	2 cut(s)	611, 837
SfuI	TTCGAA	1 cut(s)	1277
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	1197
SmlI	CTYRAG	1 cut(s)	903
SmoI	CTYRAG	1 cut(s)	903
Sse9I	AATT	7 cut(s)	357, 415, 588, 739, 865, 1156, 1279
SseBI	AGGCCT	2 cut(s)	386, 823
SsiI	CCGC	5 cut(s)	241, 787, 797, 1066, 1325
SspMI	CTAG	1 cut(s)	686
SstI	GAGCTC	1 cut(s)	1106
StuI	AGGCCT	2 cut(s)	386, 823
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	4 cut(s)	325, 1148, 1277, 1318
TasI	AATT	7 cut(s)	357, 415, 588, 739, 865, 1156, 1279
TatI	WGTACW	3 cut(s)	754, 1230, 1338
TfiI	GAWTC	1 cut(s)	680
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	5 cut(s)	267, 836, 839, 850, 937
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	3 cut(s)	161, 327, 513
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	228
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	1156, 1279
XceI	RCATGY	1 cut(s)	931
XmnI	GAANNNNTTC	3 cut(s)	334, 739, 1264
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.